An in vitro study of urea and ammonia production and transport by the intestinal tract of fed and fasted rainbow trout: responses to luminal glutamine and ammonia loading

Rapid profiling of fish cell nitrogen metabolism with single-cell Raman spectroscopy: Unveiling enzyme's role in ammonia detoxification

Ammonia is a prevalent aquatic pollutant that disrupts cellular functions and energy metabolism in fish, posing significant environmental and health threats. This research investigates the critical role of arginase 2 (ARG2) in mitigating ammonia toxicity in fish cells and its implications in adapting to nitrogen metabolism under high ammonia exposure. Through a CRISPR-Cas9 engineered ARG2 knockdown (KD) in the Epithelioma Papulosum Cyprini (EPC) cell line, we first investigated the biochemical responses of ARG2 KD and wild-type (WT) EPC cells to ammonia stress (NH4Cl treatment), showing diminished urea production and decreased cell viability in ARG2 KD cells. Subsequently, single-cell Raman spectroscopy analysis revealed that ARG2 KD cells exhibited profound metabolic shifts, including changes in protein, nucleic acids, lipid and sugar levels, showing the adjusting role of ARG2 in the balance of carbohydrate and nitrogen metabolism. Furthermore, the upregulated responses of various amino acids, such as glutamine, arginine, alanine, glutamic acid, glycine, histidine, phenylalanine and valine, in WT cells after NH4Cl treatment diminished in ARG2 KD cells except for the decrease in aspartic acid, indicating a switching effect of ARG2 in nitrogen metabolism under ammonia stress. This study highlights ARG2's essential role in ammonia detoxification and emphasizes ARG2's protective function and its importance in metabolism, shedding light on the adaptive mechanisms fish cells deploy against high ammonia environments. These insights contribute to deep understanding of aquatic organisms' molecular responses to environmental ammonia pollution, offering potential strategies for their protection.

The physiological consequences of a very large natural meal in a voracious marine fish, the staghorn sculpin (Leptocottus armatus)

Little information exists on physiological consequences when wild fish eat natural food. Staghorn sculpins at 10-13°C voluntarily consumed 15.8% of their body mass in anchovies. Gastric clearance was slow with >60% of the meal retained in the stomach at 48 h, and was not complete until 84 h. At 14-24 h post-feeding, pH was depressed by 3 units and Cl- concentration was elevated 2-fold in gastric chyme, reflecting HCl secretion, while in all sections of the intestine, pH declined by 1 pH unit but Cl- concentration remained unchanged. PCO2 and total ammonia concentration were greatly elevated throughout the tract, whereas PNH3 and HCO3- concentration were depressed. Intestinal HCO3- secretion rates, measured in gut sacs in vitro, were also lower in fed fish. Whole-animal O2 consumption rate was elevated approximately 2-fold for 72 h post-feeding, reflecting 'specific dynamic action', whereas ammonia and urea-N excretion rates were elevated about 5-fold. Arterial blood exhibited a modest 'alkaline tide' for about 48 h, but there was negligible excretion of metabolic base to the external seawater. PaCO2 and PaO2 remained unchanged. Plasma total amino acid concentration and total lipid concentration were elevated about 1.5-fold for at least 48 h, whereas small increases in plasma total ammonia concentration, PNH3 and urea-N concentration were quickly attenuated. Plasma glucose concentration remained unchanged. We conclude that despite the very large meal, slow processing with high efficiency minimizes internal physiological disturbances. This differs greatly from the picture provided by previous studies on aquacultured species using synthetic diets and/or force-feeding. Questions remain about the role of the gastro-intestinal microbiome in nitrogen and acid-base metabolism.

Prediction of Feed Efficiency and Performance-Based Traits in Fish via Integration of Multiple Omics and Clinical Covariates

Fish aquaculture is a rapidly expanding global industry, set to support growing demands for sources of marine protein. Enhancing feed efficiency (FE) in farmed fish is required to reduce production costs and improve sector sustainability. Recognising that organisms are complex systems whose emerging phenotypes are the product of multiple interacting molecular processes, systems-based approaches are expected to deliver new biological insights into FE and growth performance. Here, we establish 14 diverse layers of multi-omics and clinical covariates to assess their capacities to predict FE and associated performance traits in a fish model (Oncorhynchus tshawytscha) and uncover the influential variables. Inter-omic relatedness between the different layers revealed several significant concordances, particularly between datasets originating from similar material/tissue and between blood indicators and some of the proteomic (liver), metabolomic (liver), and microbiomic layers. Single- and multi-layer random forest (RF) regression models showed that integration of all data layers provide greater FE prediction power than any single-layer model alone. Although FE was among the most challenging of the traits we attempted to predict, the mean accuracy of 40 different FE models in terms of root-mean square errors normalized to percentage was 30.4%, supporting RF as a feature selection tool and approach for complex trait prediction. Major contributions to the integrated FE models were derived from layers of proteomic and metabolomic data, with substantial influence also provided by the lipid composition layer. A correlation matrix of the top 27 variables in the models highlighted FE trait-associations with faecal bacteria (Serratia spp.), palmitic and nervonic acid moieties in whole body lipids, levels of free glycerol in muscle, and N-acetylglutamic acid content in liver. In summary, we identified subsets of molecular characteristics for the assessment of commercially relevant performance-based metrics in farmed Chinook salmon.

Ammonia transport is independent of PNH3 gradients across the gastrointestinal epithelia of the rainbow trout: A role for the stomach

Although the gastrointestinal tract (GIT) is an important site for nitrogen metabolism in teleosts, the mechanisms of ammonia absorption and transport remain to be elucidated. Both protein catabolism in the lumen and the metabolism of the GIT tissues produce ammonia which, in part, enters the portal blood through the anterior region of the GIT. The present study examined the possible roles of different GIT sections of rainbow trout (Oncorhynchus mykiss) in transporting ammonia in its unionized gas form-NH₃ -by changing the PNH₃ gradient across GIT epithelia using in vitro gut sac preparations. We also surveyed messenger RNA expression patterns of three of the identified Rh proteins (Rhbg, Rhcg1, and  Rhcg2) as potential NH₃ transporters and NKCC as a potential ammonium ion (NH₄ ⁺ ) transporter along the GIT of rainbow trout. We found that ammonia absorption is not dependent on the PNH₃ gradient despite expression of Rhbg and Rhcg2 in the intestinal tissues, and Rhcg2 in the stomach. We detected no expression of Rhbg in the stomach and no expression of Rhcg1 in any GIT tissues. There was also a lack of correlation between ammonia transport and [NH₄ ⁺ ] gradient despite NKCC expression in all GIT tissues. Regardless of PNH₃ gradients, the stomach showed the greatest absorption and net tissue consumption of ammonia. Overall, our findings suggest nitrogen metabolism zonation of GIT, with stomach serving as an important site for the absorption, handling and transport of ammonia that is independent of the PNH₃ gradient.

Do extreme postprandial levels of oxygen, carbon dioxide, and ammonia in the digestive tract equilibrate with the bloodstream in the freshwater rainbow trout (Oncorhynchus mykiss)?

The gastrointestinal tract (GIT) lumen of teleosts harbors extreme conditions, especially after feeding: high PCO₂ (20-115 Torr), total ammonia (415-3710 μM), PNH₃ (79-1760 μTorr in the intestine), and virtual anoxia (PO₂ < 1 Torr). These levels could be dangerous if they were to equilibrate with the bloodstream. Thus, we investigated the potential equilibration of O₂, CO₂, and ammonia across the GIT epithelia in freshwater rainbow trout by monitoring postprandial arterial and venous blood gases in vivo and in situ. In vivo blood was sampled from the indwelling catheters in the dorsal aorta (DA) and subintestinal vein (SIV) draining the posterior intestine in the fasting state and at 4 to 48 h following catheter-feeding. To investigate possible ammonia absorption in the anterior part of the GIT, blood was sampled from the DA, SIV and hepatic portal vein (HPV) from anaesthetized fish in situ following voluntary feeding. We found minimal equilibration of all three gases between the GIT lumen and the SIV blood, with the latter maintaining pre-feeding levels (PO₂ = 25-49 Torr, PCO₂ = 6-8 Torr, and total ammonia = 117-134 μM and PNH₃ = 13-30 μTorr at 48 h post-feeding). In contrast to the SIV, we found that the HPV total ammonia more than doubled 24 h after feeding (128 to 297 μM), indicative of absorption in the anterior GIT. Overall, the GIT epithelia of trout, although specialized for absorption, prevent dangerous levels of PO₂, PCO₂ and ammonia from equilibrating with the blood circulation.

Plant Growth Promoting Endophytic Bacteria Bacillus australimaris BLR41 and Enterobacter kobei BLR45 Enhance the Growth of Medicinal Plant Barleria lupulina Lindl

A total of 50 root colonising bacterial endophytes were identified from a medicinal plant in this investigation (Barleria lupulina), and characterized based on morphologically selected isolates, BLR41 were Gram-negative motile, rod-shaped and BLR45 was Gram-positive, rod-shaped, and light yellow in color. The BLR41 isolate was motile and the BLR45 was positive for indole. The strains BLR41 and BLR45 were positive for citrate, amylase, protease, and lipase. Among all the isolates, BLR41 and BLR45 exhibited higher enzymatic test positive in citrate, amylase lipase, and protease. Furthermore, PGP efficacy as maximum production of zinc in BLR41 isolate and phosphate solubilization in BLR45. Solubilization of the highest zinc (2.80 μg/mL) was obtained by the isolate BLR41, followed by BLR23 and then BLR35. The highest level of phosphate (2.60 μg/mL) was recorded with the BLR45, followed by the BLR07 and BLR18. A consortium of bacterial strains performed better results than individual inoculation. The isolate BLR41 and BLR45 were identified as Bacillus australimaris and Enterobacter kobei following the 16S rRNA sequencing. Among all, seed germination was induced by 93% in consortium BLR41+BLR45, compared to control (T1). An increase in the shoot length by 30% was recorded with the treatment of BLR41+BRL45, BLR41 increase (54%), and BLR45 (35%), respectively. On the other hand, the consortium of mixed cultures, BLR41+BLR45, showed an increased fresh and the weight of dry 65% and 58%. The findings of this study indicate that the consortium of B. australimaris BLR41 and E. kobei BLR45 significantly enhances plant growth in the Pot experiment by zinc and phosphate solubilization properties.

Postprandial nitrogen and acid-base regulation in the seawater acclimated green crab, Carcinus maenas

The effects of feeding (meal of 3% of body mass) on acid-base and nitrogen homeostasis were investigated in the seawater acclimated green shore crab, Carcinus maenas. Feeding did not change gastric fluid pH (~pH 6); however, feeding was associated with a respiratory acidosis. Hemolymph HCO₃^- did not increase during this acidosis, although titratable and net acid efflux changed from an uptake to an excretion. Feeding affected the crabs' nitrogen homeostasis causing a substantial increase in hemolymph ammonia and urea concentrations after six hours. At this point, hemolymph urea accounted for ~1/3 of nitrogenous waste accumulated within the hemolymph, suggesting a potential role in ammonia detoxification. The postprandial increase in hemolymph ammonia coincided with an 18-fold increase in ammonia excretion rates that accounted for the majority of net acid excreted by the crabs. Urea excretion rates did not increase after feeding; however, branchial urease activity increased, implying that the gills may possess a mechanism to form excretable ammonia through the catabolism of urea. Our results demonstrate that despite an acidic gastric compartment, C. maenas does not experience a postprandial alkaline tide and that any feeding related acid-base challenges are primarily derived from metabolic acid production. Our findings also indicate that unlike the bicarbonate buffering acid-base compensatory response induced by hypercapnia and emersion, acid-base challenges upon feeding are compensated through changes in the excretion of acid equivalents, mainly in the form of ammonia.

Post-prandial respiratory gas and acid-base profiles in the gastrointestinal tract and its venous drainage in freshwater rainbow trout (Oncorhynchus mykiss) and seawater English sole (Parophrys vetulus)

The basic respiratory gas and acid-base conditions inside the lumen of the gastrointestinal tract (GIT) and blood draining the tract are largely unestablished in teleost fishes after feeding, though there have been some recent novel discoveries on freshwater rainbow trout (Oncorhynchus mykiss) and seawater English sole (Parophrys vetulus). The present study examined in greater detail the gas (PO₂, PCO₂, PNH₃) and acid-base profiles (pH, [HCO₃^-], total [ammonia]) in the lumen of the stomach, the anterior, mid, and posterior intestine, as well as the venous drainage (subintestinal and/or hepatic portal vein) of the GIT in these two species 20 h post-feeding. Both species had high PCO₂, PNH₃, and total [ammonia], and low PO₂ (virtual anoxia) in the lumens throughout all sections of the GIT, and high [HCO₃^-] in the intestine. Total [ammonia], PNH₃, and [HCO₃^-] increased from anterior to posterior intestine in both species. P. vetulus had higher intestinal total [ammonia] and lower [HCO₃^-] than O. mykiss post feeding, but total [ammonia] was much higher in the stomach of O. mykiss. Despite the extreme conditions in the lumen, both arterial and venous blood showed relatively lower PCO₂, total [ammonia] and higher PO₂, implying limited equilibration between the two compartments. The higher [HCO₃^-] and lower total [ammonia] in the intestinal lumen of the freshwater O. mykiss than the seawater P. vetulus suggest the need for future comparative studies using conspecifics fed identical diets but acclimated to the two different salinities in order to understand the potential role of environmental salinity and associated osmoregulatory processes underlying these differences.