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Islamova R, Yanshin N, Zamyatkina E, Gulk E, Zuy E, Billig S, Birkemeyer C, Tarakhovskaya E. Metabolic Adjustment of High Intertidal Alga Pelvetia canaliculata to the Tidal Cycle Includes Oscillations of Soluble Carbohydrates, Phlorotannins, and Citric Acid Content. Int J Mol Sci 2023; 24:10626. [PMID: 37445801 PMCID: PMC10341635 DOI: 10.3390/ijms241310626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 06/17/2023] [Accepted: 06/22/2023] [Indexed: 07/15/2023] Open
Abstract
The brown alga Pelvetia canaliculata is one of the species successfully adapted to intertidal conditions. Inhabiting the high intertidal zone, Pelvetia spends most of its life exposed to air, where it is subjected to desiccation, light, and temperature stresses. However, the physiological and biochemical mechanisms allowing this alga to tolerate such extreme conditions are still largely unknown. The objective of our study is to compare the biochemical composition of Pelvetia during the different phases of the tidal cycle. To our knowledge, this study is the first attempt to draft a detailed biochemical network underneath the complex physiological processes, conferring the successful survival of this organism in the harsh conditions of the high intertidal zone of the polar seas. We considered the tide-induced changes in relative water content, stress markers, titratable acidity, pigment, and phlorotannin content, as well as the low molecular weight metabolite profiles (GC-MS-based approach) in Pelvetia thalli. Thallus desiccation was not accompanied by considerable increase in reactive oxygen species content. Metabolic adjustment of P. canaliculata to emersion included accumulation of soluble carbohydrates, various phenolic compounds, including intracellular phlorotannins, and fatty acids. Changes in titratable acidity accompanied by the oscillations of citric acid content imply that some processes related to the crassulacean acid metabolism (CAM) may be involved in Pelvetia adaptation to the tidal cycle.
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Affiliation(s)
- Renata Islamova
- Department of Plant Physiology and Biochemistry, Faculty of Biology, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia; (R.I.)
| | - Nikolay Yanshin
- Department of Plant Physiology and Biochemistry, Faculty of Biology, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia; (R.I.)
| | - Elizaveta Zamyatkina
- Department of Plant Physiology and Biochemistry, Faculty of Biology, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia; (R.I.)
| | - Ekaterina Gulk
- Department of Plant Physiology and Biochemistry, Faculty of Biology, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia; (R.I.)
| | - Ekaterina Zuy
- Department of Plant Physiology and Biochemistry, Faculty of Biology, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia; (R.I.)
| | - Susan Billig
- Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany (C.B.)
| | - Claudia Birkemeyer
- Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany (C.B.)
- German Center for Integrative Biodiversity Research (iDiv) Halle-Leipzig-Jena, 04103 Leipzig, Germany
| | - Elena Tarakhovskaya
- Department of Plant Physiology and Biochemistry, Faculty of Biology, Saint Petersburg State University, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia; (R.I.)
- Vavilov Institute of General Genetics, Saint Petersburg Branch, Russian Academy of Science, Universitetskaya Nab., 7/9, 199034 Saint Petersburg, Russia
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Tarakhovskaya E, Marcillo A, Davis C, Milkovska-Stamenova S, Hutschenreuther A, Birkemeyer C. Matrix Effects in GC–MS Profiling of Common Metabolites after Trimethylsilyl Derivatization. Molecules 2023; 28:molecules28062653. [PMID: 36985624 PMCID: PMC10053008 DOI: 10.3390/molecules28062653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2023] [Revised: 03/02/2023] [Accepted: 03/10/2023] [Indexed: 03/17/2023] Open
Abstract
Metabolite profiling using gas chromatography coupled to mass spectrometry (GC–MS) is one of the most frequently applied and standardized methods in research projects using metabolomics to analyze complex samples. However, more than 20 years after the introduction of non-targeted approaches using GC–MS, there are still unsolved challenges to accurate quantification in such investigations. One particularly difficult aspect in this respect is the occurrence of sample-dependent matrix effects. In this project, we used model compound mixtures of different compositions to simplify the study of the complex interactions between common constituents of biological samples in more detail and subjected those to a frequently applied derivatization protocol for GC–MS analysis, namely trimethylsilylation. We found matrix effects as signal suppression and enhancement of carbohydrates and organic acids not to exceed a factor of ~2, while amino acids can be more affected. Our results suggest that the main reason for our observations may be an incomplete transfer of carbohydrate and organic acid derivatives during the injection process and compound interaction at the start of the separation process. The observed effects were reduced at higher target compound concentrations and by using a more suitable injection-liner geometry.
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Affiliation(s)
- Elena Tarakhovskaya
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia
- Vavilov Institute of General Genetics RAS, St. Petersburg Branch, 199034 St. Petersburg, Russia
| | - Andrea Marcillo
- Mass Spectrometry Research Group, Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany
- Institute of Energy and Climate Research (IEK-8), Forschungszentrum Jülich GmbH, 52428 Jülich, Germany
| | - Caroline Davis
- Mass Spectrometry Research Group, Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany
- Waters GmbH, 1130 Vienna, Austria
| | - Sanja Milkovska-Stamenova
- Bioanalytics Research Group, Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany
- AP Diagnostics GmbH, 04103 Leipzig, Germany
| | - Antje Hutschenreuther
- Mass Spectrometry Research Group, Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany
| | - Claudia Birkemeyer
- Mass Spectrometry Research Group, Faculty of Chemistry and Mineralogy, Leipzig University, 04103 Leipzig, Germany
- German Center for Integrative Biodiversity Research (iDiv) Halle-Leipzig-Jena, 04103 Leipzig, Germany
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Bogaert KA, Zakka EE, Coelho SM, De Clerck O. Polarization of brown algal zygotes. Semin Cell Dev Biol 2023; 134:90-102. [PMID: 35317961 DOI: 10.1016/j.semcdb.2022.03.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 03/01/2022] [Accepted: 03/03/2022] [Indexed: 11/29/2022]
Abstract
Brown algae are a group of multicellular, heterokont algae that have convergently evolved developmental complexity that rivals that of embryophytes, animals or fungi. Early in development, brown algal zygotes establish a basal and an apical pole, which will become respectively the basal system (holdfast) and the apical system (thallus) of the adult alga. Brown algae are interesting models for understanding the establishment of cell polarity in a broad evolutionary context, because they exhibit a large diversity of life cycles, reproductive strategies and, importantly, their zygotes are produced in large quantities free of parental tissue, with symmetry breaking and asymmetric division taking place in a highly synchronous manner. This review describes the current knowledge about the establishment of the apical-basal axis in the model brown seaweeds Ectocarpus, Dictyota, Fucus and Saccharina, highlighting the advantages and specific interests of each system. Ectocarpus is a genetic model system that allows access to the molecular basis of early development and life-cycle control over apical-basal polarity. The oogamous brown alga Fucus, together with emerging comparative models Dictyota and Saccharina, emphasize the diversity of strategies of symmetry breaking in determining a cell polarity vector in brown algae. A comparison with symmetry-breaking mechanisms in land plants, animals and fungi, reveals that the one-step zygote polarisation of Fucus compares well to Saccharomyces budding and Arabidopsis stomata development, while the two-phased symmetry breaking in the Dictyota zygote compares to Schizosaccharomyces fission, the Caenorhabditis anterior-posterior zygote polarisation and Arabidopsis prolate pollen polarisation. The apical-basal patterning in Saccharina zygotes on the other hand, may be seen as analogous to that of land plants. Overall, brown algae have the potential to bring exciting new information on how a single cell gives rise to an entire complex body plan.
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Affiliation(s)
- Kenny A Bogaert
- Phycology Research Group, Department of Biology, Ghent University, Krijgslaan 281 S8, B-9000 Ghent, Belgium.
| | - Eliane E Zakka
- Phycology Research Group, Department of Biology, Ghent University, Krijgslaan 281 S8, B-9000 Ghent, Belgium
| | - Susana M Coelho
- Department of Algal Development and Evolution, Max Planck Institute for Biology, Tübingen, Germany
| | - Olivier De Clerck
- Phycology Research Group, Department of Biology, Ghent University, Krijgslaan 281 S8, B-9000 Ghent, Belgium
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Obluchinskaya ED, Pozharitskaya ON, Zakharov DV, Flisyuk EV, Terninko II, Generalova YE, Smekhova IE, Shikov AN. The Biochemical Composition and Antioxidant Properties of Fucus vesiculosus from the Arctic Region. Mar Drugs 2022; 20:193. [PMID: 35323492 PMCID: PMC8954510 DOI: 10.3390/md20030193] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 02/28/2022] [Accepted: 03/03/2022] [Indexed: 02/07/2023] Open
Abstract
Fucus vesiculosus is one of the most prominent brown algae in the shallow waters of the seas of the Arctic region (Barents (BS), White (WS), Norwegian (NS), and Irminger (IS)). The aim of this study was to determine the biochemical composition of F. vesiculosus from the Arctic at different reproductive phases, and to evaluate the antioxidant properties of F. vesiculosus extracts. The amounts of monosaccharides, phlorotannins, flavonoids, and ash and the mineral composition significantly varied in the algae. A strong correlation was established between monosaccharide, phlorotannin, and flavonoid accumulation and water salinity (Pearson’s correlation coefficients r = −0.58, 0.83, and 0.44, respectively; p < 0.05). We noted a negative correlation between the antioxidant activity and the amount of the structural monosaccharides of fucoidan (r = −0.64). A positive correlation of phlorotannins and flavonoids with antioxidant power was confirmed for all samples. The ash accumulation was relatively lower in the sterile phase for the algae from the BS and WS. The correlation between the Metal Pollution Index (MPI) and the reproductive phases was medium with high fluctuation. Meanwhile, the MPI strongly correlated with the salinity and sampling site. The gradient of the MPI values across the sea was in the following ranking order: BS < WS < NS < IS. Taken together, and based on our data on the elemental contents of F. vesiculosus, we believe that this alga does not accumulate toxic doses of elements. Therefore, the Arctic F. vesiculosus could be safely used in food and drug development as a source of active biochemical compounds and as a source of dietary elements to cover the daily nutritional requirements of humans.
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Affiliation(s)
- Ekaterina D. Obluchinskaya
- Murmansk Marine Biological Institute of the Russian Academy of Sciences (MMBI RAS), Vladimirskaya, 17, 183010 Murmansk, Russia; (E.D.O.); (O.N.P.); (D.V.Z.)
| | - Olga N. Pozharitskaya
- Murmansk Marine Biological Institute of the Russian Academy of Sciences (MMBI RAS), Vladimirskaya, 17, 183010 Murmansk, Russia; (E.D.O.); (O.N.P.); (D.V.Z.)
| | - Denis V. Zakharov
- Murmansk Marine Biological Institute of the Russian Academy of Sciences (MMBI RAS), Vladimirskaya, 17, 183010 Murmansk, Russia; (E.D.O.); (O.N.P.); (D.V.Z.)
| | - Elena V. Flisyuk
- Department of Pharmaceutical Formulations, St. Petersburg State Chemical Pharmaceutical University, Prof. Popov, 14, 197376 Saint-Petersburg, Russia; (E.V.F.); (I.E.S.)
| | - Inna I. Terninko
- Core Shared Research Facilities “Analytical Center”, St. Petersburg State Chemical Pharmaceutical University, Prof. Popov, 14, 197376 Saint-Petersburg, Russia; (I.I.T.); (Y.E.G.)
| | - Yulia E. Generalova
- Core Shared Research Facilities “Analytical Center”, St. Petersburg State Chemical Pharmaceutical University, Prof. Popov, 14, 197376 Saint-Petersburg, Russia; (I.I.T.); (Y.E.G.)
| | - Irina E. Smekhova
- Department of Pharmaceutical Formulations, St. Petersburg State Chemical Pharmaceutical University, Prof. Popov, 14, 197376 Saint-Petersburg, Russia; (E.V.F.); (I.E.S.)
| | - Alexander N. Shikov
- Murmansk Marine Biological Institute of the Russian Academy of Sciences (MMBI RAS), Vladimirskaya, 17, 183010 Murmansk, Russia; (E.D.O.); (O.N.P.); (D.V.Z.)
- Department of Pharmaceutical Formulations, St. Petersburg State Chemical Pharmaceutical University, Prof. Popov, 14, 197376 Saint-Petersburg, Russia; (E.V.F.); (I.E.S.)
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5
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Birkemeyer C, Lemesheva V, Billig S, Tarakhovskaya E. Composition of Intracellular and Cell Wall-Bound Phlorotannin Fractions in Fucoid Algae Indicates Specific Functions of These Metabolites Dependent on the Chemical Structure. Metabolites 2020; 10:E369. [PMID: 32933101 PMCID: PMC7570113 DOI: 10.3390/metabo10090369] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2020] [Revised: 09/07/2020] [Accepted: 09/09/2020] [Indexed: 01/03/2023] Open
Abstract
Accumulation of biologically active metabolites is a specific feature of plant biochemistry, directing the use of plants in numerous applications in the pharmaceutical and food industries. Among these substances, the plethora of phenolic compounds has attracted particular interest among researchers. Here, we report on new findings in phlorotannin research, a large group of multifunctional phenolic substances, produced in brown algae. Comprehensive LC-MS profiling of three algal species allowed us to depict the complex pattern of this structurally diverse compound group across different tissues and subcellular compartments. We compiled more than 30 different phlorotannin series in one sample and used accurate mass spectrometry to assign tentative structures to the observed ions based on the confirmed sum formulas. From that, we found that acetylation, hydroxylation, and oxidation are likely to be the most common in vivo modifications to phlorotannins. Using an alternative data mining strategy to cope with extensive coelution and structural isomers, we quantitatively compared the intensity of different phlorotannin series in species, tissues, and subcellular compartments to learn more about their physiological functions. The structure and intra-thallus profiles of cell wall-bound phlorotannins were studied here for the first time. We suggest that one of the major dibenzodioxin-type phlorotannin series may exclusively target integration into the cell wall of fucoid algae.
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Affiliation(s)
- Claudia Birkemeyer
- Faculty of Chemistry and Mineralogy, University of Leipzig, 04103 Leipzig, Germany;
| | - Valeriya Lemesheva
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia;
| | - Susan Billig
- Faculty of Chemistry and Mineralogy, University of Leipzig, 04103 Leipzig, Germany;
| | - Elena Tarakhovskaya
- Department of Plant Physiology and Biochemistry, Faculty of Biology, St. Petersburg State University, 199034 St. Petersburg, Russia;
- Department of Scientific Information, Russian Academy of Sciences Library, 199034 St. Petersburg, Russia
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6
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Felline S, Del Coco L, Kaleb S, Guarnieri G, Fraschetti S, Terlizzi A, Fanizzi FP, Falace A. The response of the algae Fucus virsoides (Fucales, Ochrophyta) to Roundup® solution exposure: A metabolomics approach. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 254:112977. [PMID: 31377326 DOI: 10.1016/j.envpol.2019.112977] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2019] [Revised: 06/28/2019] [Accepted: 07/27/2019] [Indexed: 06/10/2023]
Abstract
Glyphosate, as a broad-spectrum herbicide, is frequently detected in water and several studies have investigated its effects on several freshwater aquatic organisms. Yet, only few investigations have been performed on marine macroalgae. Here, we studied both the metabolomics responses and the effect on primary production in the endemic brown algae Fucus virsoides exposed to different concentration (0, 0.5, 1.5 and 2.5 mg L-1) of a commercial glyphosate-based herbicide, namely Roundup®. Our results show that Roundup® significantly reduced quantum yield of photosynthesis (Fv/Fm) and caused alteration in the metabolomic profiles of exposed thalli compared to controls. Together with the decrease in the aromatic amino acids (phenylalanine and tyrosine), an increase in shikimate content was detected. The branched-amino acids differently varied according to levels of herbicide exposure, as well as observed for the content of choline, formate, glucose, malonate and fumarate. Our results suggest that marine primary producers could be largely affected by the agricultural land use, this asking for further studies addressing the ecosystem-level effects of glyphosate-based herbicides in coastal waters.
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Affiliation(s)
- S Felline
- CoNISMa, Piazzale Flaminio 9, 00196, Roma, Italy
| | - L Del Coco
- Department of Biology, Environmental Sciences and Technologies, University of Salento, 73100, Lecce, Italy
| | - S Kaleb
- Department of Life Sciences, University of Trieste, 34127, Trieste, Italy
| | - G Guarnieri
- CoNISMa, Piazzale Flaminio 9, 00196, Roma, Italy; Department of Biology, Environmental Sciences and Technologies, University of Salento, 73100, Lecce, Italy
| | - S Fraschetti
- Department of Biology, University of Naples Federico II, 80926, Napoli, Italy; Stazione Zoologica Anton Dohrn, 80121, Napoli, Italy
| | - A Terlizzi
- Department of Life Sciences, University of Trieste, 34127, Trieste, Italy; Stazione Zoologica Anton Dohrn, 80121, Napoli, Italy
| | - F P Fanizzi
- Department of Biology, Environmental Sciences and Technologies, University of Salento, 73100, Lecce, Italy.
| | - A Falace
- Department of Life Sciences, University of Trieste, 34127, Trieste, Italy
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Osmolovskaya N, Shumilina J, Kim A, Didio A, Grishina T, Bilova T, Keltsieva OA, Zhukov V, Tikhonovich I, Tarakhovskaya E, Frolov A, Wessjohann LA. Methodology of Drought Stress Research: Experimental Setup and Physiological Characterization. Int J Mol Sci 2018; 19:E4089. [PMID: 30563000 PMCID: PMC6321153 DOI: 10.3390/ijms19124089] [Citation(s) in RCA: 76] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2018] [Revised: 12/11/2018] [Accepted: 12/14/2018] [Indexed: 01/27/2023] Open
Abstract
Drought is one of the major stress factors affecting the growth and development of plants. In this context, drought-related losses of crop plant productivity impede sustainable agriculture all over the world. In general, plants respond to water deficits by multiple physiological and metabolic adaptations at the molecular, cellular, and organism levels. To understand the underlying mechanisms of drought tolerance, adequate stress models and arrays of reliable stress markers are required. Therefore, in this review we comprehensively address currently available models of drought stress, based on culturing plants in soil, hydroponically, or in agar culture, and critically discuss advantages and limitations of each design. We also address the methodology of drought stress characterization and discuss it in the context of real experimental approaches. Further, we highlight the trends of methodological developments in drought stress research, i.e., complementing conventional tests with quantification of phytohormones and reactive oxygen species (ROS), measuring antioxidant enzyme activities, and comprehensively profiling transcriptome, proteome, and metabolome.
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Affiliation(s)
- Natalia Osmolovskaya
- Department of Plant Physiology and Biochemistry, St. Petersburg State University, 199034 St. Petersburg, Russia.
| | - Julia Shumilina
- Department of Biochemistry, St. Petersburg State University, 199904 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Ahyoung Kim
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Anna Didio
- Department of Biochemistry, St. Petersburg State University, 199904 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Tatiana Grishina
- Department of Biochemistry, St. Petersburg State University, 199904 St. Petersburg, Russia.
| | - Tatiana Bilova
- Department of Plant Physiology and Biochemistry, St. Petersburg State University, 199034 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Olga A Keltsieva
- Institute of Analytical Instrumentation, Russian Academy of Science, 190103 St. Petersburg, Russia.
| | - Vladimir Zhukov
- All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
| | - Igor Tikhonovich
- All-Russia Research Institute for Agricultural Microbiology, 196608 St. Petersburg, Russia.
- Department of Genetics and Biotechnology, St. Petersburg State University, 199034 St. Petersburg, Russia.
| | - Elena Tarakhovskaya
- Department of Plant Physiology and Biochemistry, St. Petersburg State University, 199034 St. Petersburg, Russia.
- Department of Scientific Information, Russian Academy of Sciences Library, 199034 St. Petersburg, Russia.
| | - Andrej Frolov
- Department of Biochemistry, St. Petersburg State University, 199904 St. Petersburg, Russia.
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.
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