Soil lead pollution modifies the structure of arbuscular mycorrhizal fungal communities

Role of arbuscular mycorrhizal fungi in lead translocation from Bidens pilosa L. plants to soil

Bidens pilosa frequently forms a symbiotic association with arbuscular mycorrhizal fungi (AMF). This plant species can grow in Pb-polluted soils, accumulating Pb in its tissues. The aims of the study were to determine whether Pb accumulated in the tissues of B. pilosa can be transferred to the soil through AMF and to compare the role of AMF communities that have a history of exposure to the contaminant with those that have never been exposed. The experiment combined plants with and without Pb accumulated in their tissues, and inoculated with AMF collected from the rhizosphere of B. pilosa in soils contaminated and not contaminated with Pb. The results showed that AMF participate in the removal of Pb that had entered the plant and release it into the soil, as evidenced by the presence of Pb in the AMF spores and in the glomalin produced by AMF. We propose that Pb accumulation in AMF spores would be a protection mechanism that interrupts Pb uptake by the plant; however, that mechanism would not be fully exploited in detoxification, whereas the production of Pb-enriched glomalin could be an important detoxification mechanism to eliminate Pb already taken up by plants. AMF with a history of Pb exposure achieved only higher rates of root colonization, while AMF without previous exposure showed higher Pb concentration in the spores and higher glomalin production, and successfully removed Pb from both the roots and aboveground parts of the plant. The use of AMF communities not adapted to Pb may be a more effective option for microbe-mediated phytoremediation methods in which detoxification mechanisms are desirable.

Mycorrhizal fungal communities associated with three metal accumulator plants growing in an abandoned Pb smelting factory

Plants associated with mycorrhizal fungi has the ability to establish on metal-contaminated soils playing an important role in phytoremediation programs. The objective of this study was to examine the presence of arbuscular mycorrhizal fungi (AMF) (spores density, diversity, indicator species, and root colonization) and dark septate endophytic fungi (DSE fungal root colonization) in three metal accumulator plants (Sorghum halepense, Bidens pilosa, and Tagetes minuta) growing in soils with high Pb content. The Pb content in AMF spores and plant biomass were also assessed. Rhizosphere soil samples were taken from the three dominant plant species at six study sites surrounding the abandoned Pb smelter and one uncontaminated site. The three studied plants were colonized by AMF and DSE fungi. A total of 24 AMF morphospecies were present in the Pb-contaminated areas. The AMF indicator species in the control site (non-contaminated area) was Funneliformis mosseae and in the most contaminated site were Gigaspora decipiens and Denticustata biornata. There was an increase in mycorrhizal variables such as the number of AMF vesicles, spore number, Pb content in AMF spores and plant biomass and DSE colonization (in Sorghum) with increasing soil Pb contamination, but a decrease in AMF diversity and richness was found. For upcoming soil restoration projects, it is crucial to understand the mycorrhizal fungi as well as the plant community that has adapted to the highly contaminated environment.

Arbuscular mycorrhizal fungi community analysis revealed the significant impact of arsenic in antimony- and arsenic-contaminated soil in three Guizhou regions

Introduction

The lack of systematic investigations of arbuscular mycorrhizal fungi (AMF) community composition is an obstacle to AMF biotechnological applications in antimony (Sb)- and arsenic (As)-polluted soil.

Methods

Morphological and molecular identification were applied to study the AMF community composition in Sb- and As-contaminated areas, and the main influencing factors of AMF community composition in Sb- and As-contaminated areas were explored.

Results

(1) A total of 513,546 sequences were obtained, and the majority belonged to Glomeraceae [88.27%, 193 operational taxonomic units (OTUs)], followed by Diversisporaceae, Paraglomeraceae, Acaulosporaceae, Gigasporaceae, and Archaeosporaceae; (2) the affinity between AMF and plants was mainly related to plant species (F = 3.488, p = 0.022 < 0.050), which was not significantly correlated with the total Sb (TSb) and total As (TAs) in soil; (3) the AMF spore density was mainly related to the available nitrogen, available potassium, and total organic carbon; (4) The effect of soil nutrients on AMF community composition (total explanation: 15.36%) was greater than that of soil Sb and As content (total explanation: 5.80%); (5) the effect of TAs on AMF community composition (λ = -0.96) was more drastic than that of TSb (λ = -0.21), and the effect of As on AMF community composition was exacerbated by the interaction between As and phosphorus in the soil; and (6) Diversisporaceae was positively correlated with the TSb and TAs.

Discussion

The potential impact of As on the effective application of mycorrhizal technology should be further considered when applied to the ecological restoration of Sb- and As-contaminated areas.

The function and community structure of arbuscular mycorrhizal fungi in ecological floating beds used for remediation of Pb contaminated wastewater

Arbuscular mycorrhizal fungi (AMF) have been demonstrated to be ubiquitous in aquatic ecosystems. However, their distributions and ecological functions are rarely studied. To date, a few studies have combined sewage treatment facilities with AMF to improve removal efficiency, but appropriate and highly tolerant AMF strains have not been explored, and the purification mechanisms remain unclear. In this study, three ecological floating-bed (EFB) installations inoculated with different AMF inocula (mine AMF inoculum, commercial AMF inoculum and non-AMF inoculated) were constructed to investigate their removal efficiency for Pb-contaminated wastewater. The AMF community structure shifts in the roots of Canna indica inhabiting EFBs during the three phases (pot culture phase, hydroponic phase and hydroponic phase with Pb stress) were tracked utilizing quantitative real-time polymerase chain reaction and Illumina sequencing techniques. Furthermore, transmission electron microscopy (TEM) and energy-dispersive X-ray spectroscopy (EDS) were used to detect the Pb location in mycorrhizal structures. The results showed that AMF could promote host plant growth and enhance the Pb removal efficiency of the EFBs. The higher the AMF abundance, the better the effect of the AMF on Pb purification by EFBs. Both flooding and Pb stress decreased the AMF diversity but did not significantly inhibit the abundance. The three inoculation treatments showed different community compositions with different dominant AMF taxa in different phases, and an uncultured Paraglomus species (Paraglomus sp. LC516188.1) was found to be the most dominant (99.65 %) AMF in the hydroponic phase with Pb stress. The TEM and EDS analysis results showed that the Paraglomus sp. could accumulate Pb in plant roots through their fungal structures (intercellular mycelium, intracellular mycelium, etc.), which alleviated the toxic effect of Pb on plant cells and limited Pb translocation. The new findings provide a theoretical basis for the application of AMF in plant-based bioremediation of wastewater and polluted waterbodies.

Soil Mercury Pollution Changes Soil Arbuscular Mycorrhizal Fungal Community Composition

Remediation of mercury (Hg)-contaminated soil by mycorrhizal technology has drawn increasing attention because of its environmental friendliness. However, the lack of systematic investigations on arbuscular mycorrhizal fungi (AMF) community composition in Hg-polluted soil is an obstacle for AMF biotechnological applications. In this study, the AMF communities within rhizosphere soils from seven sites from three typical Hg mining areas were sequenced using an Illumina MiSeq platform. A total of 297 AMF operational taxonomic units (OTUs) were detected in the Hg mining area, of which Glomeraceae was the dominant family (66.96%, 175 OTUs). AMF diversity was significantly associated with soil total Hg content and water content in the Hg mining area. Soil total Hg showed a negative correlation with AMF richness and diversity. In addition, the soil properties including total nitrogen, available nitrogen, total potassium, total phosphorus, available phosphorus, and pH also affected AMF diversity. Paraglomeraceae was found to be negatively correlated to Hg stress. The wide distribution of Glomeraceae in Hg-contaminated soil makes it a potential candidate for mycorrhizal remediation.

Generalist arbuscular mycorrhizal fungi dominated heavy metal polluted soils at two artisanal and small - scale gold mining sites in southeastern Ecuador

BACKGROUND

Artisanal and small-scale gold mining activities are producing contamination with heavy metals and metalloids (HMM) into soils and water worldwide. The HMM are considered as one of the major abiotic stresses due to their long-term persistence in soil. In this context, arbuscular mycorrhizal fungi (AMF) confer resistance to a variety of abiotic plant stressors including HMM. However, little is known regarding the diversity and composition of AMF communities in heavy metal polluted sites in Ecuador.

METHODS

In order to investigate the AMF diversity, root samples and associated soil of six plant species were collected from two sites polluted by heavy metals, located in Zamora-Chinchipe province, Ecuador. The AMF 18S nrDNA genetic region was analyzed and sequenced, and fungal OTUs were defined based on 99% sequence similarity. Results were contrasted with AMF communities from a natural forest and from reforestation sites located in the same province and with available sequences in GenBank.

RESULTS

The main pollutants in soils were Pb, Zn, Hg, Cd and Cu with concentrations exceeding the soil reference value for agricultural use. Molecular phylogeny and OTU delimitation showed 19 OTUs, the family Glomeraceae was the most OTU-rich followed by Archaeosporaceae, Acaulosporaceae, Ambisporaceae and Paraglomeraceae. Most of the OTUs (11 of 19) have been found at other locations worldwide, 14 OTUs were proven from nearby non-contaminated sites in Zamora-Chinchipe.

CONCLUSION

Our study showed that there are no specialized OTUs at the studied HMM polluted sites, but rather generalists adapted to a wide variety of habitats. Their potential role in phytoremediation approaches remains to be investigated.

Alterations of the gut microbiota and metabolomics in children with e-waste lead exposure

BACKGROUND

A lead (Pb) exposure can alter the composition and metabolites of gut microbiota. However, few studies investigated this association in the children.

METHODS

A total of 551 children aged 3-7 years were recruited from Guiyu (the e-waste dismantling area) and Haojiang (the reference area). There were finally 70 subjects met the inclusive criteria. Blood and urinary Pb concentrations were detected by GFAAS and ICP-MS techniques. The microbiota and metabolites were measured in stool samples using 16 S rRNA MiSeq sequencing technology and gas chromatography-mass spectrometry (GC-MS), respectively.

RESULTS

Average Pb concentrations in the blood and urine of children were higher in Guiyu than in Haojiang. There were 58 kinds of differential genera and 19 types of discrepant metabolites between the two groups, and wide and significant correlations were found between them. Exposure to Pb caused the most significant differences in microbiota, metabolites, and physical development parameters between the two groups in terms of microbiota, metabolites, and physical development indicators. Sphingolipid metabolism and ion transport may also be altered by Pb exposure.

CONCLUSIONS

Exposure to Pb is associated with significant alterations in the gut microbiota and metabolome in children. More research is needed to confirm the findings of this study.

Effect of an arbuscular mycorrhizal fungus on maize growth and cadmium migration in a sand column

The ecological role of arbuscular mycorrhizal fungi (AMF) on altering cadmium (Cd) migration in polluted soil is still unresolved. The present experiment aimed to clarify whether AMF can reduce Cd loss due to leaching at different Cd concentrations (0, 5, 10, and 15 mg L^-1) with maize as a host plant cultured in a sand column. The effects of the arbuscular mycorrhizal fungus Funneliformis mosseae on the root morphology, exudate content, and Cd uptake by maize and Cd loss due to leaching were investigated. The AMF altered the root morphology and exudate content of the maize, resulting in increases in the root length, volume, surface area, tips and branch number and in the contents of soluble sugars, proteins, and amino acids in the root exudates, and the AMF increased maize biomass and Cd uptake by 22.0-31.0%. Moreover, the AMF significantly increased the contents of total and easily extractable glomalin-related soil protein (GRSP), increased Cd adsorption by sand particles and decreased the Cd concentration in the solution at a depth of 20 cm, resulting in a 67.5-97.2% decrease in the Cd loss due to leaching from the sand column. Furthermore, the root exudate content was very significantly positively correlated with Cd adsorption by the sand particles. Root length was significantly positively correlated with Cd uptake by the maize roots, but the average root diameter was very significantly negatively correlated with Cd uptake by maize. Thus, the AMF altered Cd migration by increasing the contents of GRSP and exudates and root morphology, which contributed to reducing the Cd concentration in the solution and Cd loss due to leaching from the sand column. Taken together, these results indicated that AMF serve an ecological function in reducing Cd loss due to leaching from polluted soil.

Arbuscular Mycorrhizal Fungi Increase Pb Uptake of Colonized and Non-Colonized Medicago truncatula Root and Deliver Extra Pb to Colonized Root Segment

Arbuscular mycorrhizal (AM) fungi establish symbiosis and improve the lead (Pb) tolerance of host plants. The AM plants accumulate more Pb in roots than their non-mycorrhizal counterparts. However, the direct and long-term impact of AM fungi on plant Pb uptake has been rarely reported. In this study, AM fungus (Rhizophagus irregularis) colonized and non-colonized roots of Medicago truncatula were separated by a split-root system, and their differences in responding to Pb application were compared. The shoot biomass accumulation and transpiration were increased after R. irregularis inoculation, whereas the biomass of both colonized and non-colonized roots was decreased. Lead application in the non-colonized root compartment increased the R. irregularis colonization rate and up-regulated the relative expressions of MtPT4 and MtBCP1 in the colonized root compartments. Rhizophagus irregularis inoculation increased Pb uptake in both colonized and non-colonized roots, and R. irregularis transferred Pb to the colonized root segment. The Pb transferred through the colonized root segment had low mobility and might be sequestrated and compartmented in the root by R. irregularis. The Pb uptake of roots might follow water flow, which is facilitated by MtPIP2. The quantification of Pb transfer via the mycorrhizal pathway and the involvement of MtPIP2 deserve further study.

DNA Metabarcoding for the Characterization of Terrestrial Microbiota-Pitfalls and Solutions

Soil-borne microbes are major ecological players in terrestrial environments since they cycle organic matter, channel nutrients across trophic levels and influence plant growth and health. Therefore, the identification, taxonomic characterization and determination of the ecological role of members of soil microbial communities have become major topics of interest. The development and continuous improvement of high-throughput sequencing platforms have further stimulated the study of complex microbiota in soils and plants. The most frequently used approach to study microbiota composition, diversity and dynamics is polymerase chain reaction (PCR), amplifying specific taxonomically informative gene markers with the subsequent sequencing of the amplicons. This methodological approach is called DNA metabarcoding. Over the last decade, DNA metabarcoding has rapidly emerged as a powerful and cost-effective method for the description of microbiota in environmental samples. However, this approach involves several processing steps, each of which might introduce significant biases that can considerably compromise the reliability of the metabarcoding output. The aim of this review is to provide state-of-the-art background knowledge needed to make appropriate decisions at each step of a DNA metabarcoding workflow, highlighting crucial steps that, if considered, ensures an accurate and standardized characterization of microbiota in environmental studies.

Potential Effects of Microplastic on Arbuscular Mycorrhizal Fungi

Microplastics (MPs) are ubiquitously found in terrestrial ecosystems and are increasingly recognized as a factor of global change (GCF). Current research shows that MP can alter plant growth, soil inherent properties, and the composition and activity of microbial communities. However, knowledge about how microplastic affects arbuscular mycorrhizal fungi (AMF) is scarce. For plants it has been shown that microplastic can both increase and decrease the aboveground biomass and reduce the root diameter, which could indirectly cause a change in AMF abundance and activity. One of the main direct effects of microplastic is the reduction of the soil bulk density, which translates to an altered soil pore structure and water transport. Moreover, especially fibers can have considerable impacts on soil structure, namely the size distribution and stability of soil aggregates. Therefore, microplastic alters a number of soil parameters that determine habitat space and conditions for AMF. We expect that this will influence functions mediated by AMF, such as soil aggregation, water and nutrient transport. We discuss how the impacts of microplastic on AMF could alter how plants deal with other GCFs in the context of sustainable food production. The co-occurrence of several GCFs, e.g., elevated temperature, drought, pesticides, and microplastic could modify the impact of microplastic on AMF. Furthermore, the ubiquitous presence of microplastic also relates to earth system processes, e.g., net primary production (NPP), carbon and nitrogen cycling, which involve AMF as key soil organisms. For future research, we outline which experiments should be prioritized.

High-throughput sequencing analysis of the rhizosphere arbuscular mycorrhizal fungi (AMF) community composition associated with Ferula sinkiangensis

BACKGROUND

Ferula sinkiangensis is an increasingly endangered medicinal plant. Arbuscular mycorrhiza fungi (AMF) are symbiotic microorganisms that live in the soil wherein they enhance nutrient uptake, stress resistance, and pathogen defense in host plants. While such AMF have the potential to contribute to the cultivation of Ferula sinkiangensis, the composition of AMF communities associated with Ferula sinkiangensis and the relationship between these fungi and other pertinent abiotic factors still remains to be clarified.

RESULTS

Herein, we collected rhizosphere and surrounding soil samples at a range of depths (0-20, 20-40, and 40-60 cm) and a range of slope positions (bottom, middle, top). These samples were then subjected to analyses of soil physicochemical properties and high-throughput sequencing (Illumina MiSeq). We determined that Glomus and Diversispora species were highly enriched in all samples. We further found that AMF diversity and richness varied significantly as a function of slope position, with this variation primarily being tied to differences in relative Glomus and Diversispora abundance. In contrast, no significant relationship was observed between soil depth and overall AMF composition, although some AMF species were found to be sensitive to soil depth. Many factors significantly affected AMF community composition, including organic matter content, total nitrogen, total potassium, ammonium nitrogen, nitrate nitrogen, available potassium, total dissolvable salt levels, pH, soil water content, and slope position. We further determined that Shannon diversity index values in these communities were positively correlated with total phosphorus, nitrate-nitrogen levels, and pH values (P < 0.05), whereas total phosphorus, total dissolvable salt levels, and pH were positively correlated with Chao1 values (P < 0.05).

CONCLUSION

In summary, our data revealed that Glomus and Diversispora are key AMF genera found within Ferula sinkiangensis rhizosphere soil. These fungi are closely associated with specific environmental and soil physicochemical properties, and these soil sample properties also differed significantly as a function of slope position (P < 0.05). Together, our results provide new insights regarding the relationship between AMF species and Ferula sinkiangensis, offering a theoretical basis for further studies of their development.

Fetal and early postnatal lead exposure measured in teeth associates with infant gut microbiota

BACKGROUND

Lead (Pb) is an environmentally ubiquitous heavy metal associated with a wide range of adverse health effects in children. Both lead exposure and the early life microbiome- which plays a critical role in human development-have been linked to similar health outcomes, but it is unclear if the adverse effects of lead are partially driven by early life gut microbiota dysbiosis. The objective of this study was to examine the association between in utero and postnatal lead levels (measured in deciduous baby teeth) and early life bacterial and fungal gut microbiota in the first year of life.

METHODS

Data from the Wayne County Health, Environment, Allergy and Asthma Longitudinal Study (WHEALS) birth cohort were analyzed. Tooth lead levels during the 2nd and 3rd trimesters and postnatally (<1 year of age) were quantified using high-resolution microspatial mapping of dentin growth rings. Early life microbiota were measured in stool samples collected at approximately 1 and 6 months of age, using both 16S rRNA (bacterial) and ITS2 (fungal) sequencing. Of the 1,258 maternal-child pairs in WHEALS, 146 had data on both tooth metals and early life microbiome.

RESULTS

In utero tooth lead levels were significantly associated with gut fungal community composition at 1-month of age, where higher levels of 2nd trimester tooth lead was associated with lower abundances of Candida and Aspergillus and higher abundances of Malassezia and Saccharomyces; 3rd trimester lead was also associated with lower abundances of Candida. Though lead did not significantly associate with the overall structure of the infant gut bacterial community, it associated with the abundance of some specific bacterial taxa, including the increased abundance of Collinsella and Bilophila and a decreased abundance of Bacteroides taxa.

CONCLUSIONS

The observed associations between lead exposure and infant gut microbiota could play a role in the impact of lead on childhood development. Given the paucity of research examining these associations in humans-particularly for fungal microbiota-further investigation is needed.

Ecological drivers of methanotrophic communities in paddy soils around mercury mining areas

Methanotrophs play a crucial role in mitigating methane (CH₄) emission by oxidizing produced CH₄ in paddy soils; however, ecological drivers of methanotrophic community in the soils around heavy metal contaminated areas remain unclear. In this study, we evaluated the effects of heavy metal pollution and soil properties on the abundance, diversity and composition of methanotrophic community in paddy soils from two typical mercury (Hg) mining regions in southwest China. The results of random forest and structure equation models suggest that both heavy metal content and soil nutrients greatly influenced the attributes of methanotrophic community. In general, the abundance and diversity of methanotrophs were negatively related to soil Hg content, but showed positive correlation with soil organic carbon content. However, the other metals (cadmium (Cd), nickel (Ni), lead (Pb), arsenic (As), zinc (Zn)) had inconsistent associations with the microbial indexes of methanotrophic community in the soil. Elevated levels of heavy metal and nutrients in the soils shifted the community composition of methanotrophs. For example, Pb, As and Zn contents had negative associations with the relative abundance of Methylocaldum. In addition, changes in the relative abundance of ecological clusters within the co-occurrence network of methanotrophs were related to metal contents and soil properties. Together, our findings provide novel insights into understanding ecological drivers of methanotrophic community in paddy soils around Hg mining regions, with important implications for mitigating CH₄ emissions in terrestrial ecosystems.

Arbuscular Mycorrhizal Fungal Communities Are Influenced by Host Tree Species on the Loess Plateau, Northwest China

Arbuscular mycorrhizal (AM) fungi can establish mutualistic symbioses with most terrestrial plants and therefore play a crucial role in the re-vegetation and rehabilitation of degraded ecosystems. Yet, little information is available on AM fungal communities associated with dominant tree species in the semi-arid region of the Loess Plateau, Northwest China. In this study, topsoil (0–20 cm) and subsoil (20–40 cm) samples were collected from the rhizosphere of five dominant tree species in northern Shaanxi Province, to investigate the distribution and diversity of their associated AM fungi. The tree species were Hippophae rhamnoides Linn., Juniperus communis L., Populus cathayana Rehd., Robinia pseudoacacia L., and Salix matsudana Koidz. In total, 24 AM fungal species of eight genera were isolated from the rhizosphere soil samples and identified based on their spore morphology. Funneliformis and Funneliformis monosporum were respectively the most abundant genus and species of AM fungi. The distribution and diversity of AM fungi differed among the five tree species and also between the two soil depths. Across different tree species, the spore density of AM fungi varied from 2.85 to 15.32 spores g−1 fresh soil, with a species richness of 3–7, Shannon–Wiener index of 0.81–1.08, and evenness index of 0.30–0.53. The mycorrhizal colonization rate had a significant negative correlation with both the Shannon-Wiener index and species richness, whereas it was positively correlated with the evenness index. Permutational multivariate analysis of variance, non-metric multidimensional scaling, and structural equation modeling revealed that tree species, rather than soil depth or its interactions with tree species, had significant effects on the composition of AM fungal communities. In conclusion, the distribution and diversity of AM fungi associated with the dominant tree species were mainly affected by host tree species identity in the semi-arid ecosystem. Claroideoglomus etunicatum (W.N. Becker & Gerdemann) C. Walker & A. Schüßler and Glomus reticulatum Bhattacharjee & Mukerji appeared to be promising candidates for ecological restoration in the Loess Plateau region because of their adaptation to its semi-arid conditions with a broad spectrum of host tree species.