1
|
Bognár Z, Mosshammer M, Brodersen KE, Bollati E, Gyurcsányi RE, Kühl M. Multiparameter Sensing of Oxygen and pH at Biological Interfaces via Hyperspectral Imaging of Luminescent Sensor Nanoparticles. ACS Sens 2024; 9:1763-1774. [PMID: 38607997 PMCID: PMC11060167 DOI: 10.1021/acssensors.3c01941] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 03/22/2024] [Accepted: 03/29/2024] [Indexed: 04/14/2024]
Abstract
Chemical dynamics in biological samples are seldom stand-alone processes but represent the outcome of complicated cascades of interlinked reaction chains. In order to understand these processes and how they correlate, it is important to monitor several parameters simultaneously at high spatial and temporal resolution. Hyperspectral imaging is a promising tool for this, as it provides broad-range spectral information in each pixel, enabling the use of multiple luminescent indicator dyes, while simultaneously providing information on sample structures and optical properties. In this study, we first characterized pH- and O2-sensitive indicator dyes incorporated in different polymer matrices as optical sensor nanoparticles to provide a library for (hyperspectral) chemical imaging. We then demonstrate the successful combination of a pH-sensitive indicator dye (HPTS(DHA)3), an O2-sensitive indicator dye (PtTPTBPF), and two reference dyes (perylene and TFPP), incorporated in polymer nanoparticles for multiparameter chemical imaging of complex natural samples such as green algal biofilms (Chlorella sorokiniana) and seagrass leaves (Zostera marina) with high background fluorescence. We discuss the system-specific challenges and limitations of our approach and further optimization possibilities. Our study illustrates how multiparameter chemical imaging with hyperspectral read-out can now be applied on natural samples, enabling the alignment of several chemical parameters to sample structures.
Collapse
Affiliation(s)
- Zsófia Bognár
- BME
“Lendület” Chemical Nanosensors Research Group,
Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, Műegyetem rkp. 3, Budapest 1111, Hungary
- Center
for Visualizing Catalytic Processes (VISION), Department of Physics, Technical University of Denmark, Fysikvej 307, Kongens Lyngby 2800, Denmark
| | - Maria Mosshammer
- Marine
Biology Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingo̷r 3000, Denmark
| | - Kasper E. Brodersen
- Marine
Biology Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingo̷r 3000, Denmark
- Environmental
Dynamics, Department of Science and Environment, Roskilde University, Universitetsvej 1, Roskilde 4000, Denmark
| | - Elena Bollati
- Marine
Biology Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingo̷r 3000, Denmark
| | - Róbert E. Gyurcsányi
- BME
“Lendület” Chemical Nanosensors Research Group,
Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, Műegyetem rkp. 3, Budapest 1111, Hungary
- HUN-REN-BME
Computation Driven Chemistry Research Group, Department of Inorganic
and Analytical Chemistry, Budapest University
of Technology and Economics, Műegyetem rkp. 3, Budapest 1111, Hungary
| | - Michael Kühl
- Marine
Biology Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingo̷r 3000, Denmark
| |
Collapse
|
2
|
Kalinichev AV, Zieger SE, Koren K. Optical sensors (optodes) for multiparameter chemical imaging: classification, challenges, and prospects. Analyst 2023; 149:29-45. [PMID: 37975528 DOI: 10.1039/d3an01661g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
Chemical gradients and uneven distribution of analytes are common in natural and artificial systems. As a result, the ability to visualize chemical distributions in two or more dimensions has gained significant importance in recent years. This has led to the integration of chemical imaging techniques into all domains of analytical chemistry. In this review, we focus on the use of optical sensors, so-called optodes, to obtain real-time and multidimensional images of two or more parameters simultaneously. It is important to emphasize that multiparameter imaging in this context is not confined solely to multiple chemical parameters (analytes) but also encompasses physical (e.g., temperature or flow) or biological (e.g., metabolic activity) parameters. First, we discuss the technological milestones that have paved the way for chemical imaging using optodes. Later, we delve into various strategies that can be taken to enable multiparameter imaging. The latter spans from developing novel receptors that enable the recognition of multiple parameters to chemometrics and machine learning-based techniques for data analysis. We also explore ongoing trends, challenges, and prospects for future developments in this field. Optode-based multiparameter imaging is a rapidly expanding field that is being fueled by cutting-edge technologies. Chemical imaging possesses the potential to provide novel insights into complex samples, bridging not only across various scientific disciplines but also between research and society.
Collapse
Affiliation(s)
- Andrey V Kalinichev
- Aarhus University Centre for Water Technology, Department of Biology - Microbiology, Ny Munkegade 116, 8000 Aarhus C, Denmark.
| | - Silvia E Zieger
- Aarhus University Centre for Water Technology, Department of Biology - Microbiology, Ny Munkegade 116, 8000 Aarhus C, Denmark.
| | - Klaus Koren
- Aarhus University Centre for Water Technology, Department of Biology - Microbiology, Ny Munkegade 116, 8000 Aarhus C, Denmark.
| |
Collapse
|
3
|
Zieger SE, Koren K. Machine learning for optical chemical multi-analyte imaging : Why we should dare and why it's not without risks. Anal Bioanal Chem 2023; 415:2749-2761. [PMID: 37071140 PMCID: PMC10185573 DOI: 10.1007/s00216-023-04678-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2023] [Revised: 03/28/2023] [Accepted: 03/30/2023] [Indexed: 04/19/2023]
Abstract
Simultaneous sensing of metabolic analytes such as pH and O2 is critical in complex and heterogeneous biological environments where analytes often are interrelated. However, measuring all target analytes at the same time and position is often challenging. A major challenge preventing further progress occurs when sensor signals cannot be directly correlated to analyte concentrations due to additional effects, overshadowing and complicating the actual correlations. In fields related to optical sensing, machine learning has already shown its potential to overcome these challenges by solving nested and multidimensional correlations. Hence, we want to apply machine learning models to fluorescence-based optical chemical sensors to facilitate simultaneous imaging of multiple analytes in 2D. We present a proof-of-concept approach for simultaneous imaging of pH and dissolved O2 using an optical chemical sensor, a hyperspectral camera for image acquisition, and a multi-layered machine learning model based on a decision tree algorithm (XGBoost) for data analysis. Our model predicts dissolved O2 and pH with a mean absolute error of < 4.50·10-2 and < 1.96·10-1, respectively, and a root mean square error of < 2.12·10-1 and < 4.42·10-1, respectively. Besides the model-building process, we discuss the potentials of machine learning for optical chemical sensing, especially regarding multi-analyte imaging, and highlight risks of bias that can arise in machine learning-based data analysis.
Collapse
Affiliation(s)
- Silvia E Zieger
- Aarhus University Centre for Water Technology (WATEC), Department of Biology, Section for Microbiology, Aarhus University, Ny Munkegade 114, 8000, Aarhus C, Denmark
| | - Klaus Koren
- Aarhus University Centre for Water Technology (WATEC), Department of Biology, Section for Microbiology, Aarhus University, Ny Munkegade 114, 8000, Aarhus C, Denmark.
| |
Collapse
|
4
|
Würth C, Behnke T, Gienger J, Resch-Genger U. Efficiency scale for scattering luminescent particles linked to fundamental and measurable spectroscopic properties. Sci Rep 2023; 13:6254. [PMID: 37069220 PMCID: PMC10110600 DOI: 10.1038/s41598-023-32933-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2023] [Accepted: 04/04/2023] [Indexed: 04/19/2023] Open
Abstract
Comparing the performance of molecular and nanoscale luminophores and luminescent micro- and nanoparticles and estimating achievable signal amplitudes and limits of detection requires a standardizable intensity scale. This initiated the development of the relative MESF (number of molecules of equivalent soluble fluorochromes) and ERF (equivalent reference fluorophores) scales for flow cytometry and fluorescence microscopy. Both intensity scales rely on fluorescence intensity values assigned to fluorescent calibration beads by an intensity comparison to spectrally closely matching fluorophore solutions of known concentration using a spectrofluorometer. Alternatively, the luminophore or bead brightness (B) can be determined that equals the product of the absorption cross section (σa) at the excitation wavelength (σa(λex)) and the photoluminescence quantum yield (Φpl). Thereby, an absolute scale based on fundamental and measurable spectroscopic properties can be realized which is independent of particle size, material, and luminophore staining or labeling density and considers the sensitivity of the optical properties of luminophores to their environment. Aiming for establishing such a brightness scale for light-scattering dispersions of luminescent particles with sizes exceeding a few ten nanometers, we demonstrate how the brightness of quasi-monodisperse 25 nm, 100 nm, and 1 µm sized polystyrene particles (PSP), loaded with two different dyes in varying concentrations, can be obtained with a single custom-designed integrating sphere setup that enables the absolute determination of Φpl and transmittance and diffuse reflectance measurements. The resulting Φpl, σa(λex), imaginary parts of the refractive index, and calculated B values of these samples are given in dependence of the number of incorporated dye molecule per particle. Finally, a unitless luminescence efficiency (LE) is defined allowing for the direct comparison of luminescence efficiencies of particles with different sizes.
Collapse
Affiliation(s)
- Christian Würth
- Division Biophotonics, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstaetter Str. 11, 12489, Berlin, Germany.
| | - Thomas Behnke
- Division Biophotonics, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstaetter Str. 11, 12489, Berlin, Germany
| | - Jonas Gienger
- Physikalisch-Technische Bundesanstalt (PTB), Abbestr. 2-12, 10587, Berlin, Germany
| | - Ute Resch-Genger
- Division Biophotonics, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstaetter Str. 11, 12489, Berlin, Germany.
| |
Collapse
|
5
|
Yu H, Yu B, Song Y, Hai P. Recent advances of cyclometalated Ir(III) complexes for optical oxygen sensing. Inorganica Chim Acta 2023. [DOI: 10.1016/j.ica.2023.121435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
|
6
|
Composites Based on Polylactide Doped with Amorphous Europium(III) Complex as Perspective Thermosensitive Luminescent Materials. INORGANICS 2022. [DOI: 10.3390/inorganics10120232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022] Open
Abstract
This work reports fabrication of polylactide (PLA) films doped with various additives of an amorphous Eu(III) complex. We study the temperature behavior of the luminescence intensity and lifetime of the PLA-Eu(III) composites in the range of 298–353 K and investigate the mechanism of luminescence temperature quenching. The peak relative sensitivity of the films reaches 20.1 %×K−1 and exceeds the respective characteristics of all known lanthanide-containing thermosensors designed for the range of physiological temperatures. The produced films can be potential novel materials for luminescent thermosensors.
Collapse
|
7
|
Temperature-Sensitive Chameleon Luminescent Films Based on PMMA Doped with Europium(III) and Terbium(III) Anisometric Complexes. INORGANICS 2022. [DOI: 10.3390/inorganics10070094] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
The spin-coating technique was used to produce composite films consisting of PMMA polymer doped with anisometric complexes of Eu(III) and Tb(III). It was found that an increase in the content of Tb3+ complexes intensifies emission of both ions due to the intermolecular energy transfer from the Tb(III) complex to the Eu(III) complex, which results in the increase in the relative luminescence quantum yield of Eu(III) ion by 36%. The temperature sensitivity of the film luminescence intensity and lifetime in the range of 296–363 K was investigated. The maximum relative sensitivity of the films reaches 5.44% × K−1 and exceeds that of all known lanthanide-containing thermal sensors designed for measuring physiological temperatures. In combination with changing luminescence color, such a sensitivity makes these films promising colorimetric thermal sensors for in situ temperature measurements.
Collapse
|
8
|
Yu H, Yu B, Song Y. Advances in the development of Cu(I) complexes as optical oxygen-sensitive probes. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2089028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Affiliation(s)
- Hongcui Yu
- College of Chemistry and Materials Science, Inner Mongolia Minzu University, Tongliao, Inner Mongolia, China
- Inner Mongolia Key Laboratory of Carbon Nanomaterials, Inner Mongolia Minzu University, Tongliao, Inner Mongolia , China
| | - Bo Yu
- College of Chemistry and Materials Science, Inner Mongolia Minzu University, Tongliao, Inner Mongolia, China
| | - Yajiao Song
- Inner Mongolia Key Laboratory of Carbon Nanomaterials, Inner Mongolia Minzu University, Tongliao, Inner Mongolia , China
| |
Collapse
|
9
|
Ahmerkamp S, Jalaluddin FM, Cui Y, Brumley DR, Pacherres CO, Berg JS, Stocker R, Kuypers MM, Koren K, Behrendt L. Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems. CELL REPORTS METHODS 2022; 2:100216. [PMID: 35637907 PMCID: PMC9142687 DOI: 10.1016/j.crmeth.2022.100216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2022] [Revised: 03/05/2022] [Accepted: 04/20/2022] [Indexed: 10/26/2022]
Abstract
From individual cells to whole organisms, O2 transport unfolds across micrometer- to millimeter-length scales and can change within milliseconds in response to fluid flows and organismal behavior. The spatiotemporal complexity of these processes makes the accurate assessment of O2 dynamics via currently available methods difficult or unreliable. Here, we present "sensPIV," a method to simultaneously measure O2 concentrations and flow fields. By tracking O2-sensitive microparticles in flow using imaging technologies that allow for instantaneous referencing, we measured O2 transport within (1) microfluidic devices, (2) sinking model aggregates, and (3) complex colony-forming corals. Through the use of sensPIV, we find that corals use ciliary movement to link zones of photosynthetic O2 production to zones of O2 consumption. SensPIV can potentially be extendable to study flow-organism interactions across many life-science and engineering applications.
Collapse
Affiliation(s)
- Soeren Ahmerkamp
- Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
| | | | - Yuan Cui
- Science for Life Laboratory, Department of Organismal Biology, Uppsala University, Norbyvägen 18A, SE-752 36 Uppsala, Sweden
| | - Douglas R. Brumley
- School of Mathematics and Statistics, The University of Melbourne, Parkville, VIC 3010, Australia
| | - Cesar O. Pacherres
- Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, Germany
| | - Jasmine S. Berg
- Institute of Earth Surface Dynamics, University of Lausanne, 1015 Lausanne, Switzerland
| | - Roman Stocker
- Institute for Environmental Engineering, Department of Civil, Environmental and Geomatic Engineering, ETH Zurich, 8093 Zurich, Switzerland
| | | | - Klaus Koren
- Aarhus University Centre for Water Technology, Department of Biology, Aarhus University, 8000 Aarhus, Denmark
| | - Lars Behrendt
- Science for Life Laboratory, Department of Organismal Biology, Uppsala University, Norbyvägen 18A, SE-752 36 Uppsala, Sweden
| |
Collapse
|
10
|
Krujatz F, Dani S, Windisch J, Emmermacher J, Hahn F, Mosshammer M, Murthy S, Steingroewer J, Walther T, Kühl M, Gelinsky M, Lode A. Think outside the box: 3D bioprinting concepts for biotechnological applications – recent developments and future perspectives. Biotechnol Adv 2022; 58:107930. [DOI: 10.1016/j.biotechadv.2022.107930] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 02/17/2022] [Indexed: 12/14/2022]
|
11
|
Core-shellchiralpolymeric-metallic particles obtained in a single step by concurrentlight induced processes. J Colloid Interface Sci 2022; 606:113-123. [PMID: 34388565 DOI: 10.1016/j.jcis.2021.07.143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 07/21/2021] [Accepted: 07/28/2021] [Indexed: 11/23/2022]
Abstract
Core-shell architecture enables to impart unique customized properties to microparticles, through the proper selection of composition and aggregation state of the inner and outer materials. Here, the synthesis of microparticles with a chiral dielectric core and a metallic shell of gold nanoparticles is demonstrated. The chiral core is obtained by UV induced polymerization of the self-organized droplets of a cholesteric reactive mesogen in a chloroauric acid aqueous solution. Gold nanoparticles precipitation contemporarily occurs upon UV irradiation, covering the microparticles surface. Electron microscopy and optical spectroscopy investigations give evidence that the degree of coverage of the core by gold nanoparticles, with size less than 100 nm, depends on the chloroauric acid concentration, while their aggregation is influenced by the polymeric surface morphology. The optical properties of the chiral microparticles are modified by the gold shell. Specifically, gold coating of dye doped chiral microparticles, working as Bragg onion resonators, clearly improves the stability of omnidirectional microlasers. The proposed strategy, due to the flexibility of the chiral material and of the method, opens a route toward fabrication of microdevices with wide control over light manipulation, in term of intensity, polarization, generation.
Collapse
|
12
|
Saccomano SC, Cash KJ. A near-infrared optical nanosensor for measuring aerobic respiration in microbial systems. Analyst 2021; 147:120-129. [PMID: 34854441 DOI: 10.1039/d1an01855h] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We developed a ratiometric oxygen-sensitive nanosensor and demonstrated application in monitoring metabolic oxygen consumption in microbial samples over time. Based on a near-infrared (NIR) emitting oxygen-quenched luminophore, platinum(II) octaethylporphine ketone (PtOEPK), along with a stable dioctadecyl dicarbocyanine reference dye (DiD), this nanosensor system provides an advantageous approach for overcoming imaging issues in biological systems, such as autofluorescence and optical scattering in the visible wavelength region. The dyes are encapsulated within a polymer-based nanoparticle matrix to maintain them at a constant ratio in biological samples, precluding the need for complex synthetic approaches. With this constant ratio of the two dyes, the nanosensor response can be measured as a ratio of their two signals, accounting for nanosensor concentration artifacts in measurements. The nanosensors are reversible, which enabled us to temporally monitor systems in which dissolved oxygen concentrations both increase and decrease. These sensors were applied for the monitoring of oxygen in samples of Saccharomyces cerevisiae (brewing yeast) in a 96-well optical fluorescence plate reader format over 60 h. By mixing the nanosensors directly into the sample well with the yeast, we were able to dynamically track metabolic activity changes over time due to varying cell concentration and exposure to an antimicrobial agent. This system could be a potential platform for high-throughput screening of various species or variants of microbes with unknown metabolic rates in response to external stimuli (antimicrobials, metabolites, etc.).
Collapse
Affiliation(s)
- Samuel C Saccomano
- Chemical and Biological Engineering Department, Colorado School of Mines, Golden, CO, USA.
| | - Kevin J Cash
- Chemical and Biological Engineering Department, Colorado School of Mines, Golden, CO, USA. .,Quantitative Biosciences and Engineering, Colorado School of Mines, Golden, CO, USA
| |
Collapse
|
13
|
Koren K, Zieger SE. Optode Based Chemical Imaging-Possibilities, Challenges, and New Avenues in Multidimensional Optical Sensing. ACS Sens 2021; 6:1671-1680. [PMID: 33905234 DOI: 10.1021/acssensors.1c00480] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Seeing is believing, as the saying goes, and optical sensors (so-called optodes) are tools that can make chemistry visible. Optodes react reversibly and quickly (seconds to minutes) to changing analyte concentrations, enabling the spatial and temporal visualization of an analyte in complex environments. By being available as planar sensor foils or in the form of nano- or microparticles, optodes are flexible tools suitable for a wide array of applications. The steadily grown applications of in particular oxygen (O2) and pH optodes in fields as diverse as medical, environmental, or material sciences is proof for the large demand of optode based chemical imaging. Nevertheless, the full potential of this technology is not exhausted yet, challenges have to be overcome, and new avenues wait to be taken. Within this Perspective, we look at where the field currently stands, highlight several successful examples of optode based chemical imaging and ask what it will take to advance current state-of-the-art technology. It is our intention to point toward some potential blind spots and to inspire further developments.
Collapse
Affiliation(s)
- Klaus Koren
- Aarhus University Centre for Water Technology, Department of Biology, Section for Microbiology, Aarhus University, Ny Munkegade 114, 8000 Aarhus C, Denmark
| | - Silvia E. Zieger
- Aarhus University Centre for Water Technology, Department of Biology, Section for Microbiology, Aarhus University, Ny Munkegade 114, 8000 Aarhus C, Denmark
| |
Collapse
|
14
|
Dmitriev RI, Intes X, Barroso MM. Luminescence lifetime imaging of three-dimensional biological objects. J Cell Sci 2021; 134:1-17. [PMID: 33961054 PMCID: PMC8126452 DOI: 10.1242/jcs.254763] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022] Open
Abstract
A major focus of current biological studies is to fill the knowledge gaps between cell, tissue and organism scales. To this end, a wide array of contemporary optical analytical tools enable multiparameter quantitative imaging of live and fixed cells, three-dimensional (3D) systems, tissues, organs and organisms in the context of their complex spatiotemporal biological and molecular features. In particular, the modalities of luminescence lifetime imaging, comprising fluorescence lifetime imaging (FLI) and phosphorescence lifetime imaging microscopy (PLIM), in synergy with Förster resonance energy transfer (FRET) assays, provide a wealth of information. On the application side, the luminescence lifetime of endogenous molecules inside cells and tissues, overexpressed fluorescent protein fusion biosensor constructs or probes delivered externally provide molecular insights at multiple scales into protein-protein interaction networks, cellular metabolism, dynamics of molecular oxygen and hypoxia, physiologically important ions, and other physical and physiological parameters. Luminescence lifetime imaging offers a unique window into the physiological and structural environment of cells and tissues, enabling a new level of functional and molecular analysis in addition to providing 3D spatially resolved and longitudinal measurements that can range from microscopic to macroscopic scale. We provide an overview of luminescence lifetime imaging and summarize key biological applications from cells and tissues to organisms.
Collapse
Affiliation(s)
- Ruslan I. Dmitriev
- Tissue Engineering and Biomaterials Group, Department of
Human Structure and Repair, Faculty of Medicine and Health Sciences,
Ghent University, Ghent 9000,
Belgium
| | - Xavier Intes
- Department of Biomedical Engineering, Center for
Modeling, Simulation and Imaging for Medicine (CeMSIM),
Rensselaer Polytechnic Institute, Troy, NY
12180-3590, USA
| | - Margarida M. Barroso
- Department of Molecular and Cellular
Physiology, Albany Medical College,
Albany, NY 12208, USA
| |
Collapse
|
15
|
Zieger SE, Mosshammer M, Kühl M, Koren K. Hyperspectral Luminescence Imaging in Combination with Signal Deconvolution Enables Reliable Multi-Indicator-Based Chemical Sensing. ACS Sens 2021; 6:183-191. [PMID: 33337140 DOI: 10.1021/acssensors.0c02084] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
Although real-time monitoring of individual analytes using reversible optical chemical sensors (optodes) is well established, it remains a challenge in optical sensing to monitor multiple analyte concentrations simultaneously. Here, we present a novel sensing approach using hyperspectral imaging in combination with signal deconvolution of overlapping emission spectra of multiple luminescent indicator dyes, which facilitates multi-indicator-based chemical imaging. The deconvolution algorithm uses a linear combination model to describe the superimposed sensor signals and employs a sequential least-squares fit to determine the percent contribution of the individual indicator dyes to the total measured signal. As a proof of concept, we used the algorithm to analyze the measured response of an O2 sensor composed of red-emitting Pd(II)/Pt(II) porphyrins and NIR-emitting Pd(II)/Pt(II) benzoporphyrins with different sensitivities. This facilitated chemical imaging of O2 over a wide dynamic range (0-950 hPa) with a hyperspectral camera system (470-900 nm). The applicability of the novel method was demonstrated by imaging the O2 distribution in the heterogeneous microenvironment around the roots of the aquatic plant Littorella uniflora. The presented approach of combining hyperspectral sensing with signal deconvolution is flexible and can easily be adapted for use of various multi-indicator- or even multianalyte-based optical sensors with different spectral characteristics, enabling high-resolution simultaneous imaging of multiple analytes.
Collapse
Affiliation(s)
- Silvia E. Zieger
- Aarhus University Centre for Water Technology (WATEC), Department of Biology, Section for Microbiology, Aarhus University, 8000 Aarhus C, Denmark
| | - Maria Mosshammer
- Marine Biological Section, Department of Biology, University of Copenhagen, 3000 Helsingør, Denmark
| | - Michael Kühl
- Marine Biological Section, Department of Biology, University of Copenhagen, 3000 Helsingør, Denmark
| | - Klaus Koren
- Aarhus University Centre for Water Technology (WATEC), Department of Biology, Section for Microbiology, Aarhus University, 8000 Aarhus C, Denmark
| |
Collapse
|
16
|
Elgetti Brodersen K, Kühl M, Trampe E, Koren K. Imaging O 2 dynamics and microenvironments in the seagrass leaf phyllosphere with magnetic optical sensor nanoparticles. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 104:1504-1519. [PMID: 33037691 DOI: 10.1111/tpj.15017] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Revised: 09/17/2020] [Accepted: 09/23/2020] [Indexed: 06/11/2023]
Abstract
Eutrophication leads to epiphyte blooms on seagrass leaves that strongly affect plant health, yet the actual mechanisms of such epiphyte-induced plant stress remain poorly understood. We used magnetic optical sensor nanoparticles in combination with luminescence lifetime imaging to map the O2 concentration and dynamics in the heterogeneous seagrass phyllosphere under changing light conditions. By incorporating magnetite into the sensor nanoparticles, it was possible to image the spatial O2 distribution under flow over seagrass leaf segments in the presence of a strong magnetic field. Local microniches with low leaf surface O2 concentrations were found under thick epiphytic biofilms, often leading to anoxic microhabitats in darkness. High irradiance led to O2 supersaturation across most of the seagrass phyllosphere, whereas leaf microenvironments with reduced O2 conditions were found under epiphytic biofilms at low irradiance, probably driven by self-shading. Horizontal micro-profiles extracted from the O2 images revealed pronounced heterogeneities in local O2 concentration over the base of the epiphytic biofilm, with up to 52% reduction in O2 concentrations in areas with relatively thick (>2 mm), compared with thin (≤1 mm), epiphyte layers in darkness. We also present evidence of enhanced relative internal O2 transport within leaves with epiphyte overgrowth, compared with bare seagrass leaves, in light as a result of limited mass transfer across thick outward diffusion pathways. The local availability of O2 was still markedly reduced in the epiphyte-covered leaves, however. The leaf phyllosphere is thus characterized by a complex microlandscape of O2 availability that strongly affects microbial processes occurring within the epiphytic biofilm, which may have implications for seagrass health, as anoxic microhabitats have been shown to promote the microbiological production of reduced toxic compounds, such as nitric oxide.
Collapse
Affiliation(s)
- Kasper Elgetti Brodersen
- Marine Biological Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingør, 3000, Denmark
| | - Michael Kühl
- Marine Biological Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingør, 3000, Denmark
| | - Erik Trampe
- Marine Biological Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingør, 3000, Denmark
| | - Klaus Koren
- Marine Biological Section, Department of Biology, University of Copenhagen, Strandpromenaden 5, Helsingør, 3000, Denmark
- Department of Biology, Section for Microbiology, Aarhus University Centre for Water Technology, Ny Munkegade 114, Aarhus C, 8000, Denmark
| |
Collapse
|
17
|
Kulkarni MB, Goel S. Microfluidic devices for synthesizing nanomaterials—a review. NANO EXPRESS 2020. [DOI: 10.1088/2632-959x/abcca6] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
|
18
|
Steinegger A, Wolfbeis OS, Borisov SM. Optical Sensing and Imaging of pH Values: Spectroscopies, Materials, and Applications. Chem Rev 2020; 120:12357-12489. [PMID: 33147405 PMCID: PMC7705895 DOI: 10.1021/acs.chemrev.0c00451] [Citation(s) in RCA: 174] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Indexed: 12/13/2022]
Abstract
This is the first comprehensive review on methods and materials for use in optical sensing of pH values and on applications of such sensors. The Review starts with an introduction that contains subsections on the definition of the pH value, a brief look back on optical methods for sensing of pH, on the effects of ionic strength on pH values and pKa values, on the selectivity, sensitivity, precision, dynamic ranges, and temperature dependence of such sensors. Commonly used optical sensing schemes are covered in a next main chapter, with subsections on methods based on absorptiometry, reflectometry, luminescence, refractive index, surface plasmon resonance, photonic crystals, turbidity, mechanical displacement, interferometry, and solvatochromism. This is followed by sections on absorptiometric and luminescent molecular probes for use pH in sensors. Further large sections cover polymeric hosts and supports, and methods for immobilization of indicator dyes. Further and more specific sections summarize the state of the art in materials with dual functionality (indicator and host), nanomaterials, sensors based on upconversion and 2-photon absorption, multiparameter sensors, imaging, and sensors for extreme pH values. A chapter on the many sensing formats has subsections on planar, fiber optic, evanescent wave, refractive index, surface plasmon resonance and holography based sensor designs, and on distributed sensing. Another section summarizes selected applications in areas, such as medicine, biology, oceanography, bioprocess monitoring, corrosion studies, on the use of pH sensors as transducers in biosensors and chemical sensors, and their integration into flow-injection analyzers, microfluidic devices, and lab-on-a-chip systems. An extra section is devoted to current challenges, with subsections on challenges of general nature and those of specific nature. A concluding section gives an outlook on potential future trends and perspectives.
Collapse
Affiliation(s)
- Andreas Steinegger
- Institute
of Analytical Chemistry and Food Chemistry, Graz University of Technology, Stremayrgasse 9, A-8010 Graz, Austria
| | - Otto S. Wolfbeis
- Institute
of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany
| | - Sergey M. Borisov
- Institute
of Analytical Chemistry and Food Chemistry, Graz University of Technology, Stremayrgasse 9, A-8010 Graz, Austria
| |
Collapse
|
19
|
Kühl M, Trampe E, Mosshammer M, Johnson M, Larkum AW, Frigaard NU, Koren K. Substantial near-infrared radiation-driven photosynthesis of chlorophyll f-containing cyanobacteria in a natural habitat. eLife 2020; 9:50871. [PMID: 31959282 PMCID: PMC6974357 DOI: 10.7554/elife.50871] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Accepted: 01/05/2020] [Indexed: 12/25/2022] Open
Abstract
Far-red absorbing chlorophylls are constitutively present as chlorophyll (Chl) d in the cyanobacterium Acaryochloris marina, or dynamically expressed by synthesis of Chl f, red-shifted phycobiliproteins and minor amounts of Chl d via far-red light photoacclimation in a range of cyanobacteria, which enables them to use near-infrared-radiation (NIR) for oxygenic photosynthesis. While the biochemistry and molecular physiology of Chl f-containing cyanobacteria has been unraveled in culture studies, their ecological significance remains unexplored and no data on their in situ activity exist. With a novel combination of hyperspectral imaging, confocal laser scanning microscopy, and nanoparticle-based O2 imaging, we demonstrate substantial NIR-driven oxygenic photosynthesis by endolithic, Chl f-containing cyanobacteria within natural beachrock biofilms that are widespread on (sub)tropical coastlines. This indicates an important role of NIR-driven oxygenic photosynthesis in primary production of endolithic and other shaded habitats.
Collapse
Affiliation(s)
- Michael Kühl
- Marine Biological Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark.,Climate Change Cluster, University of Technology Sydney, Sydney, Australia
| | - Erik Trampe
- Marine Biological Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Maria Mosshammer
- Marine Biological Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Michael Johnson
- iThree Institute, University of Technology Sydney, Sydney, Australia
| | - Anthony Wd Larkum
- Climate Change Cluster, University of Technology Sydney, Sydney, Australia
| | - Niels-Ulrik Frigaard
- Marine Biological Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Klaus Koren
- Marine Biological Section, Department of Biology, University of Copenhagen, Copenhagen, Denmark.,Centre for Water Technology, Section for Microbiology, Department of Bioscience, University of Aarhus, Aarhus, Denmark
| |
Collapse
|
20
|
Abstract
Multiphoton 3D lithography is becoming a tool of choice in a wide variety of fields. Regenerative medicine is one of them. Its true 3D structuring capabilities beyond diffraction can be exploited to produce structures with diverse functionality. Furthermore, these objects can be produced from unique materials allowing expanded performance. Here, we review current trends in this research area. We pay particular attention to the interplay between the technology and materials used. Thus, we extensively discuss undergoing light-matter interactions and peculiarities of setups needed to induce it. Then, we continue with the most popular resins, photoinitiators, and general material functionalization, with emphasis on their potential usage in regenerative medicine. Furthermore, we provide extensive discussion of current advances in the field as well as prospects showing how the correct choice of the polymer can play a vital role in the structure’s functionality. Overall, this review highlights the interplay between the structure’s architecture and material choice when trying to achieve the maximum result in the field of regenerative medicine.
Collapse
|
21
|
Affiliation(s)
- Xu-dong Wang
- Department of Chemistry, Fudan University, 200433 Shanghai, P. R. China
| | - Otto S. Wolfbeis
- Institute of Analytical Chemistry, Chemo- and Biosensors, University of Regensburg, D-93040 Regensburg, Germany
| |
Collapse
|
22
|
Sha T, Liu J, Sun M, Li L, Bai J, Hu Z, Zhou M. Green and low-cost synthesis of nitrogen-doped graphene-like mesoporous nanosheets from the biomass waste of okara for the amperometric detection of vitamin C in real samples. Talanta 2019; 200:300-306. [DOI: 10.1016/j.talanta.2019.03.071] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Revised: 03/13/2019] [Accepted: 03/16/2019] [Indexed: 12/28/2022]
|
23
|
Purohit P, Fortes FJ, Laserna JJ. Subfemtogram Simultaneous Elemental Detection in Multicomponent Nanomatrices Using Laser-Induced Plasma Emission Spectroscopy within Atmospheric Pressure Optical Traps. Anal Chem 2019; 91:7444-7449. [PMID: 31074601 DOI: 10.1021/acs.analchem.9b01579] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Simultaneous detection of multiple constituents in the characterization of state-of-the-art nanomaterials is an elusive topic to a majority of the analytical techniques covering the field of nanotechnology. Optical catapulting (OC) and optical trapping (OT) have recently been combined with laser-induced breakdown spectroscopy (LIBS) to provide single-nanoparticle resolution and attogram detection power. In the present work, the multielemental capabilities of this approach are demonstrated by subjecting two different types of nanometric ferrite particles to LIBS analysis. Up to three metallic elements in attogram quantities are consistently detected within single laser events. Individual excitation efficiency for each species is quantified from particle spectra showing an exponential correlation between photon production and the energy of the upper level of the monitored atomic line. Moreover, a new sampling strategy based in skimmer-like 3D printed cones that allows for thin dry nanoparticle aerosols to be formed via optical catapulting is introduced. Enhanced sampling resulted in an increase of the sampling throughput by facilitating stable atmospheric-pressure optical trapping of individual particles and spectroscopic chemical characterization within a short timeframe.
Collapse
Affiliation(s)
- Pablo Purohit
- UMALASERLAB, Departamento de Química Analítica , Universidad de Málaga , C/Jiménez Fraud 4 , Malaga 29010 , Spain
| | - Francisco J Fortes
- UMALASERLAB, Departamento de Química Analítica , Universidad de Málaga , C/Jiménez Fraud 4 , Malaga 29010 , Spain
| | - J Javier Laserna
- UMALASERLAB, Departamento de Química Analítica , Universidad de Málaga , C/Jiménez Fraud 4 , Malaga 29010 , Spain
| |
Collapse
|
24
|
Zhang H, Han W, Cao X, Gao T, Jia R, Liu M, Zeng W. Gold nanoclusters as a near-infrared fluorometric nanothermometer for living cells. Mikrochim Acta 2019; 186:353. [DOI: 10.1007/s00604-019-3460-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 04/28/2019] [Indexed: 10/26/2022]
|