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Camargo L, Resende da Silva GF, Baccili CC, Flores EF, Gomes V. Influence of bovine pestivirus heterogeneity on serological responses to 10 different commercial vaccine formulation. Vet Microbiol 2024; 296:110155. [PMID: 38996750 DOI: 10.1016/j.vetmic.2024.110155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Revised: 06/11/2024] [Accepted: 06/15/2024] [Indexed: 07/14/2024]
Abstract
Bovine Pestivirus typically involves one or more organ systems, with clinical manifestations ranging from mild to severe fatal systemic illness that lead to significant reproductive, productive, and economic losses. Vaccines face the challenge of addressing the significant variability of pestiviruses, which affects the interaction between viral antigens and the immune system's ability to provide protection. This study aimed to evaluate the serological responses against bovine viral diarrhea virus 1 (Pestivirus A) and Pestivirus B induced by 10 commercial vaccines, including one recombinant (vaccine E), two modified live (MLV multivalent, vaccine I, and MLV monovalent, vaccine J), and seven killed vaccines (KLV, vaccines A to H). Additionally, we evaluated the cross-reactivity between Pestivirus A and B from vaccines and HoBi-like pestivirus (Pestivirus H). In Phase 1, guinea pigs were used to screen for non-MLVs. They were divided into nine groups (n=6 each) and received two doses (⅕ of bovine dose) of eight different non-MLV on Days 0 and 21. Serum samples were collected on Days 0 and 30 for serological analyse. In Phase 2, Holstein × Gir heifers (n= 45) were divided into five groups, comprising 6-9 animals. They were vaccinated either once with MLVs or twice with the top non-MLVs screened in Phase 1. Serum samples were harvested on d0 (vaccination day) and d60 (60 days after the first dose) for MLV and non-MLV. Specific antibody titers were assessed virus neutralization (VN) and transformed in log2 for statistical analysis using PROC-MIXED. Significant effects were observed for vaccine groups, time points, and their interactions concerning neutralizing antibodies against Pestivirus A and B in both Guinea pigs and heifers. The Phase 1 study revealed serological responses against Pestivirus A exclusively in non-MLV D (85.33±13.49) and E (72.00±19.26). In the bovine study, the KLD vaccine D (72.00±15.10), recombinant vaccine E (90.66±25.85), and MLV I (170.66±28.22) resulted in an average of neutralizing antibodies against Pestivirus A that exceeded the protective threshold (≥ 60). However,individual analysis of heifers showed a higher frequency of animals presenting titers of Pestivirus A Ab surpassing 32 following vaccination with MLV I and J. None of the vaccine formulations in either study elicited a protective immune response against Pestivirus B or demonstrated cross-reactivity against Pestivirus H.
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Affiliation(s)
- Luana Camargo
- Department of Medical Clinic, Universidade de São Paulo (USP), Butantã, Brazil
| | | | | | | | - Viviani Gomes
- Department of Medical Clinic, Universidade de São Paulo (USP), Butantã, Brazil.
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Maya L, Panzera Y, Pérez R, Marandino A, Colina R. Coding-complete genome sequences of two bovine viral diarrhea virus 1a isolates from Uruguay. Microbiol Resour Announc 2024; 13:e0091723. [PMID: 38358245 DOI: 10.1128/mra.00917-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Accepted: 02/07/2024] [Indexed: 02/16/2024] Open
Abstract
Bovine viral diarrhea virus (BVDV) is an economically relevant pathogen affecting cattle production and reproduction worldwide. We report the coding-complete sequences of two BVDV-1a subtype isolates, circulating in Uruguay.
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Affiliation(s)
- L Maya
- Laboratorio de Virología Molecular, Departamento de Ciencias Biológicas, CENUR Litoral Norte-Sede Salto, Universidad de la República, Gral. Rivera, Uruguay
| | - Y Panzera
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - R Pérez
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - A Marandino
- Sección Genética Evolutiva, Departamento de Biología Animal, Instituto de Biología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - R Colina
- Laboratorio de Virología Molecular, Departamento de Ciencias Biológicas, CENUR Litoral Norte-Sede Salto, Universidad de la República, Gral. Rivera, Uruguay
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Bovine Polyomavirus-1 (Epsilonpolyomavirus bovis): An Emerging Fetal Pathogen of Cattle That Causes Renal Lesions Resembling Polyomavirus-Associated Nephropathy of Humans. Viruses 2022; 14:v14092042. [PMID: 36146848 PMCID: PMC9502773 DOI: 10.3390/v14092042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 09/08/2022] [Accepted: 09/09/2022] [Indexed: 11/17/2022] Open
Abstract
Bovine polyomavirus-1 (BoPyV-1, Epsilonpolyomavirus bovis) is widespread in cattle and has been detected in commercialized beef at supermarkets in the USA and Germany. BoPyV-1 has been questioned as a probable zoonotic agent with documented increase in seropositivity in people exposed to cattle. However, to date, BoPyV-1 has not been causally associated with pathology or disease in any animal species, including humans. Here we describe and illustrate pathological findings in an aborted bovine fetus naturally infected with BoPyV-1, providing evidence of its pathogenicity and probable abortigenic potential. Our results indicate that: (i) BoPyV-1 can cause severe kidney lesions in cattle, including tubulointerstitial nephritis with cytopathic changes and necrosis in tubular epithelial cells, tubular and interstitial inflammation, and interstitial fibroplasia; (ii) lesions are at least partly attributable to active viral replication in renal tubular epithelial cells, which have abundant intranuclear viral inclusions; (iii) BoPyV-1 large T (LT) antigen, resulting from early viral gene expression, can be detected in infected renal tubular epithelial cells using a monoclonal antibody raised against Simian Virus-40 polyomavirus LT antigen; and (iv) there is productive BoPyV-1 replication and virion assembly in the nuclei of renal tubular epithelial cells, as demonstrated by the ultrastructural observation of abundant arrays of viral particles with typical polyomavirus morphology. Altogether, these lesions resemble the “cytopathic-inflammatory pathology pattern” proposed in the pathogenesis of Human polyomavirus-1-associated nephropathy in immunocompromised people and kidney allograft recipients. Additionally, we sequenced the complete genome of the BoPyV-1 infecting the fetus, which represents the first whole genome of a BoPyV-1 from the Southern Hemisphere. Lastly, the BoPyV-1 strain infecting this fetus was isolated, causing a cytopathic effect in Madin–Darby bovine kidney cells. We conclude that BoPyV-1 is pathogenic to the bovine fetus under natural circumstances. Further insights into the epidemiology, biology, clinical relevance, and zoonotic potential of BoPyV-1 are needed.
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Dorsch MA, Francia ME, Tana LR, González FC, Cabrera A, Calleros L, Sanguinetti M, Barcellos M, Zarantonelli L, Ciuffo C, Maya L, Castells M, Mirazo S, da Silva Silveira C, Rabaza A, Caffarena RD, Doncel Díaz B, Aráoz V, Matto C, Armendano JI, Salada S, Fraga M, Fierro S, Giannitti F. Diagnostic Investigation of 100 Cases of Abortion in Sheep in Uruguay: 2015–2021. Front Vet Sci 2022; 9:904786. [PMID: 35664842 PMCID: PMC9161216 DOI: 10.3389/fvets.2022.904786] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Accepted: 04/13/2022] [Indexed: 11/13/2022] Open
Abstract
The aim of this work was to identify causes of abortion through laboratory investigations in sheep flocks in Uruguay. One hundred cases of abortion, comprising 58 fetuses, 36 fetuses with their placentas, and 6 placentas were investigated in 2015–2021. Cases were subjected to gross and microscopic pathologic examinations, and microbiological and serological testing for the identification of causes of abortion, including protozoal, bacterial, and viral pathogens. An etiologic diagnosis was determined in 46 (46%) cases, including 33 (33%) cases caused by infectious pathogens, as determined by the detection of a pathogen along with the identification of fetoplacental lesions attributable to the detected pathogen. Twenty-seven cases (27%) were caused by Toxoplasma gondii, 5 (5%) by Campylobacter fetus subspecies fetus, and 1 (1%) by an unidentified species of Campylobacter. Fourteen cases (14%) had inflammatory and/or necrotizing fetoplacental lesions compatible with an infectious etiology. Although the cause for these lesions was not clearly identified, T. gondii was detected in 4 of these cases, opportunistic bacteria (Bacillus licheniformis, Streptococcus sp.) were isolated in 2 cases, and bovine viral diarrhea virus 1 subtype i (BVDV-1i) was detected in another. Campylobacter jejuni was identified in 1 (1%) severely autolyzed, mummified fetus. BVDV-2b was identified incidentally in one fetus with an etiologic diagnosis of toxoplasmosis. Microscopic agglutination test revealed antibodies against ≥1 Leptospira serovars in 15/63 (23.8%) fetuses; however, Leptospira was not identified by a combination of qPCR, culture, fluorescent antibody testing nor immunohistochemistry. Neospora caninum, Chlamydia abortus, Chlamydia pecorum, Coxiella burnetii and border disease virus were not detected in any of the analyzed cases. Death was attributed to dystocia in 13 (13%) fetuses delivered by 8 sheep, mostly from one highly prolific flock. Congenital malformations including inferior prognathism, a focal hepatic cyst, and enterohepatic agenesis were identified in one fetus each, the latter being the only one considered incompatible with postnatal life. Toxoplasmosis, campylobacteriosis and dystocia were the main identified causes of fetal losses. Despite the relatively low overall success rate in establishing an etiologic diagnosis, a systematic laboratory workup in cases of abortion is of value to identify their causes and enables zoonotic pathogens surveillance.
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Affiliation(s)
- Matías A. Dorsch
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
| | - María E. Francia
- Laboratorio de Biología de Apicomplejos, Instituto Pasteur de Montevideo, Montevideo, Uruguay
- Departamento de Parasitología y Micología, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay
| | - Leandro R. Tana
- Laboratorio de Biología de Apicomplejos, Instituto Pasteur de Montevideo, Montevideo, Uruguay
| | - Fabiana C. González
- Laboratorio de Biología de Apicomplejos, Instituto Pasteur de Montevideo, Montevideo, Uruguay
| | - Andrés Cabrera
- Laboratorio de Interacciones Hospedero-Patógeno, Instituto Pasteur de Montevideo, Montevideo, Uruguay
- Unidad de Microbiología, Departamento de Patobiología, Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay
| | - Lucía Calleros
- Sección de Genética Evolutiva, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Margarita Sanguinetti
- Sección de Genética Evolutiva, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Maila Barcellos
- Sección de Genética Evolutiva, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
| | - Leticia Zarantonelli
- Unidad Mixta Instituto Pasteur de Montevideo e Instituto Nacional de Investigación Agropecuaria (UMPI), Montevideo, Uruguay
| | - Camila Ciuffo
- Unidad Mixta Instituto Pasteur de Montevideo e Instituto Nacional de Investigación Agropecuaria (UMPI), Montevideo, Uruguay
| | - Leticia Maya
- Laboratorio de Virología Molecular, Departamento de Ciencias Biológicas, Centro Universitario Regional (CENUR) Litoral Norte, Universidad de la República, Salto, Uruguay
| | - Matías Castells
- Laboratorio de Virología Molecular, Departamento de Ciencias Biológicas, Centro Universitario Regional (CENUR) Litoral Norte, Universidad de la República, Salto, Uruguay
| | - Santiago Mirazo
- Laboratorio de Virología, Facultad de Ciencias, Universidad de la República, Montevideo, Uruguay
- Departamento de Bacteriología y Virología, Instituto de Higiene, Facultad de Medicina, Universidad de la República, Montevideo, Uruguay
| | - Caroline da Silva Silveira
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Ana Rabaza
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Rubén D. Caffarena
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
- Unidad Académica Salud de los Rumiantes, Departamento de Producción Animal, Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay
| | - Benjamín Doncel Díaz
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
- Laboratorio de Patología Veterinaria, Facultad de Medicina Veterinaria y de Zootecnia, Universidad Nacional de Colombia, Sede Bogotá, Bogotá, Colombia
| | - Virginia Aráoz
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Carolina Matto
- Laboratorio Regional Noroeste, División de Laboratorios Veterinarios (DILAVE) Miguel C. Rubino, Ministerio de Ganadería, Agricultura y Pesca (MGAP), Paysandú, Uruguay
| | - Joaquín I. Armendano
- Facultad de Ciencias Veterinarias, Universidad Nacional del Centro de la Provincia de Buenos Aires (UNCPBA), Tandil, Argentina
| | - Sofía Salada
- Secretariado Uruguayo de la Lana (SUL), Montevideo, Uruguay
| | - Martín Fraga
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Sergio Fierro
- Secretariado Uruguayo de la Lana (SUL), Montevideo, Uruguay
| | - Federico Giannitti
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA), Estación Experimental La Estanzuela, Colonia, Uruguay
- *Correspondence: Federico Giannitti
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Glotov AG, Glotova TI, Nefedchenko AV, Koteneva SV. [Genetic diversity and distribution of bovine pestiviruses ( Flaviviridae: Pestivirus) in the world and in the Russian Federation]. Vopr Virusol 2022; 67:18-26. [PMID: 35293185 DOI: 10.36233/0507-4088-96] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2022] [Accepted: 03/15/2022] [Indexed: 11/05/2022]
Abstract
The genus Pestivirus of the family Flaviviridae includes 11 species. Bovine pestiviruses are the causative agents of viral diarrhea/mucosal disease and include three genetically distinct species: pestivirus A (BVDV-1), B (BVDV-2), and H (BVDV-3). The number of BVDV-1 subtypes is 21, BVDV-2 - 4, and BVDV-3 - 4, which complicates the diagnosis of associated diseases, reduces the effectiveness of vaccination and control programs.We performed the search in the PubMed, Web of Science, Scopus, eLIBRARY.RU databases for articles published in 2000-2021.Pestivirus A is distributed everywhere, although the largest number of subtypes was found in cattle in Italy and China. The virus is widespread in the Central region of the Russia (subtypes 1a and 1m). In Siberia, eleven subtypes circulate among native and imported animals: 1a (5%), 1b (35%), 1c (5%), 1d (10%), 1f (20%), 1g, 1i (both 2.5%), 1j, 1k, 1p, and 1r (all for 5%). Pestivirus B subtype is more virulent, found less frequently and mainly in the North and South America, in some European countries, and in Asia. Three subtypes have been identified in Siberia: 2a (25%), 2b (10%), and 2c (5%). Pestivirus H circulates in Europe, Asia and South America. The main route of entry is contaminated biological products. In Russia, BVDV-3 of the Italian-Brazilian group (3a) was detected in 7 lots of fetal bovine serum.The role of the virus in the occurrence of respiratory diseases in calves, abortion, systemic infection and enteritis in calves and adult animals has been established. The source of the virus in such cases was a contaminated modified live vaccine.
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Affiliation(s)
- A G Glotov
- FSBIS Siberian Federal Scientific Center for Agrobiotechnologies of the Russian Academy of Sciences, Institute of Experimental Veterinary Medicine of Siberia and the Far East
| | - T I Glotova
- FSBIS Siberian Federal Scientific Center for Agrobiotechnologies of the Russian Academy of Sciences, Institute of Experimental Veterinary Medicine of Siberia and the Far East
| | - A V Nefedchenko
- FSBIS Siberian Federal Scientific Center for Agrobiotechnologies of the Russian Academy of Sciences, Institute of Experimental Veterinary Medicine of Siberia and the Far East
| | - S V Koteneva
- FSBIS Siberian Federal Scientific Center for Agrobiotechnologies of the Russian Academy of Sciences, Institute of Experimental Veterinary Medicine of Siberia and the Far East
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Spetter MJ, Louge Uriarte EL, Verna AE, Leunda MR, Pereyra SB, Odeón AC, González Altamiranda EA. Genomic diversity and phylodynamic of bovine viral diarrhea virus in Argentina. INFECTION GENETICS AND EVOLUTION 2021; 96:105089. [PMID: 34563649 DOI: 10.1016/j.meegid.2021.105089] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2021] [Revised: 06/29/2021] [Accepted: 09/19/2021] [Indexed: 01/16/2023]
Abstract
Bovine viral diarrhea virus (BVDV) is an important pathogen of ruminants worldwide and is characterized by high genetic diversity and a wide range of clinical presentations. In Argentina, several studies have evaluated the genetic diversity of BVDV but no phylodynamic study has been published yet. In this study, a comprehensive compilation and update of Argentinean BVDV sequences were performed, and the evolutionary history of BVDV was characterized by phylodynamic analyses based on the 5´UTR. Although BVDV-1b and BVDV-1a were the most frequent subtypes, novel subtypes for Argentina, 1e and 1i, were identified. The phylodynamic analysis suggested that BVDV started its diversification in the mid-1650s with an exponential increase in viral diversity since the late 1990s, possibly related to the livestock expansion and intensification in the country. Evolutionary rate in the 5´UTR was faster for BVDV-1a than for BVDV-1b, and both subtypes presented an endemic nature according to the demographic reconstructions. The current study contributes to clarify the evolutionary history of BVDV in the main cattle region of the country and provides useful information about the epidemiology and future development of diagnostic and control tools in Argentina.
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Affiliation(s)
- Maximiliano J Spetter
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, C1033AAJ Buenos Aires, Argentina; Laboratorio de Virología Veterinaria, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible INTA - CONICET, Ruta 226 km 73,5, CP 7620 Balcarce, Argentina
| | - Enrique L Louge Uriarte
- Laboratorio de Virología Veterinaria, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible INTA - CONICET, Ruta 226 km 73,5, CP 7620 Balcarce, Argentina.
| | - Andrea E Verna
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, C1033AAJ Buenos Aires, Argentina; Laboratorio de Virología Veterinaria, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible INTA - CONICET, Ruta 226 km 73,5, CP 7620 Balcarce, Argentina
| | - María Rosa Leunda
- Laboratorio de Virología Veterinaria, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible INTA - CONICET, Ruta 226 km 73,5, CP 7620 Balcarce, Argentina
| | - Susana B Pereyra
- Laboratorio de Virología Veterinaria, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible INTA - CONICET, Ruta 226 km 73,5, CP 7620 Balcarce, Argentina
| | - Anselmo C Odeón
- Facultad de Ciencias Agrarias, Universidad Nacional de Mar del Plata, Balcarce, Buenos Aires, Argentina
| | - Erika A González Altamiranda
- Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Godoy Cruz 2290, C1033AAJ Buenos Aires, Argentina; Laboratorio de Virología Veterinaria, Instituto de Innovación para la Producción Agropecuaria y el Desarrollo Sostenible INTA - CONICET, Ruta 226 km 73,5, CP 7620 Balcarce, Argentina.
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Bauermann FV, Ridpath JF. Epidemiology of Pestivirus H in Brazil and Its Control Implications. Front Vet Sci 2021; 8:693041. [PMID: 34368280 PMCID: PMC8342886 DOI: 10.3389/fvets.2021.693041] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 06/11/2021] [Indexed: 11/21/2022] Open
Abstract
Along with viruses in the Pestivirus A (Bovine Viral Diarrhea Virus 1, BVDV1) and B species (Bovine Viral Diarrhea Virus 2, BVDV2), members of the Pestivirus H are mainly cattle pathogens. Viruses belonging to the Pestivirus H group are known as HoBi-like pestiviruses (HoBiPev). Genetic and antigenic characterization suggest that HoBiPev are the most divergent pestiviruses identified in cattle to date. The phylogenetic analysis of HoBiPev results in at least five subgroups (a–e). Under natural or experimental conditions, calves infected with HoBiPev strains typically display mild upper respiratory signs, including nasal discharge and cough. Although BVDV1 and BVDV2 are widely distributed and reported in many South American countries, reports of HoBiPev in South America are mostly restricted to Brazil. Despite the endemicity and high prevalence of HoBiPev in Brazil, only HoBiPev-a was identified to date in Brazil. Unquestionably, HoBiPev strains in BVDV vaccine formulations are required to help curb HoBiPev spread in endemic regions. The current situation in Brazil, where at this point only HoBiPev-a seems present, provides a more significant opportunity to control these viruses with the use of a vaccine with a single HoBiPev subtype. Despite the lack of differentiation among bovine pestiviruses by current BVDV tests, the reduced genetic variability of HoBiPev in Brazil may allow reliable identification of cases within the region. On the other hand, introducing foreign ruminants, biologicals, and genetic material to South America, especially if it originated from other HoBiPev-endemic countries, should consider the risk of introducing divergent HoBiPev subtypes.
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Affiliation(s)
- Fernando V Bauermann
- Department of Veterinary Pathobiology, College of Veterinary Medicine, Oklahoma State University (OSU), Stillwater, OK, United States
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Caffarena RD, Casaux ML, Schild CO, Fraga M, Castells M, Colina R, Maya L, Corbellini LG, Riet-Correa F, Giannitti F. Causes of neonatal calf diarrhea and mortality in pasture-based dairy herds in Uruguay: a farm-matched case-control study. Braz J Microbiol 2021; 52:977-988. [PMID: 33575990 PMCID: PMC7877513 DOI: 10.1007/s42770-021-00440-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Accepted: 02/02/2021] [Indexed: 01/08/2023] Open
Abstract
Neonatal calf diarrhea (NCD) and mortality cause significant losses to the dairy industry. The preweaning dairy calf mortality risk in Uruguay is high (15.2%); however, causes for these losses are largely unknown. This study aimed to assess whether various pathogens were associated with NCD and death in Uruguayan dairy calves and whether these infections, diarrhea, or deaths were associated with the failure of transfer of passive immunity (FTPI). Contemporary diarrheic (n = 264,) and non-diarrheic (n = 271) 1- to 30-day-old calves from 27 farms were sampled. Feces were analyzed by antigen-capture ELISA for Cryptosporidium spp., rotavirus, bovine coronavirus, and Escherichia coli F5+, RT-PCR for bovine astrovirus (BoAstV), and bacterial cultures for Salmonella enterica. Blood/serum was analyzed by RT-PCR or antigen-capture ELISA for bovine viral diarrhea virus (BVDV). Serum of ≤ 8-day-old calves (n = 95) was assessed by refractometry to determine the concention of serum total proteins (STP) as an indicator of FTPI. Whether the sampled calves died before weaning was recorded. At least one pathogen was detected in 65.4% of the calves, and this percentage was significantly higher in diarrheic (83.7%) versus non-diarrheic (47.6%) calves. Unlike the other pathogens, Cryptosporidium spp. and rotavirus were associated with NCD. Diarrheic calves, calves infected with any of the pathogens, and calves infected with rotavirus had significantly lower concentrations of STP. Diarrheic calves had higher chances of dying before weaning than non-diarrheic calves. Diarrheic calves infected with S. enterica were at increased risk of mortality. Controlling NCD, salmonellosis, cryptosporidiosis, and rotavirus infections, and improving colostrum management practices would help to reduce calf morbi-mortality in dairy farms in Uruguay.
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Affiliation(s)
- Rubén Darío Caffarena
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay. .,Departamento de Patología y Clínica de Rumiantes y Suinos, Facultad de Veterinaria, Universidad de la República (UdelaR), Montevideo, Uruguay.
| | - María Laura Casaux
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Carlos Omar Schild
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Martín Fraga
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay
| | - Matías Castells
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay.,Laboratorio de Virología Molecular, Centro Universitario Regional (CENUR) Litoral Norte, Universidad de la República (UdelaR), Salto, Uruguay
| | - Rodney Colina
- Laboratorio de Virología Molecular, Centro Universitario Regional (CENUR) Litoral Norte, Universidad de la República (UdelaR), Salto, Uruguay
| | - Leticia Maya
- Laboratorio de Virología Molecular, Centro Universitario Regional (CENUR) Litoral Norte, Universidad de la República (UdelaR), Salto, Uruguay
| | - Luis Gustavo Corbellini
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay.,Departamento de Medicina Veterinária Preventiva, Laboratório de Epidemiologia Veterinária (Epilab), Faculdade de Veterinária, Universidade Federal do Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brasil
| | - Franklin Riet-Correa
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay.,Programa de Pós Graduação em Ciência Animal nos Trópicos, Faculdade de Veterinária, Universidade Federal da Bahia, Ondina, Salvador, BA, Brasil
| | - Federico Giannitti
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria (INIA) Estación Experimental La Estanzuela, Colonia, Uruguay.
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9
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Macías-Rioseco M, Silveira C, Fraga M, Casaux L, Cabrera A, Francia ME, Robello C, Maya L, Zarantonelli L, Suanes A, Colina R, Buschiazzo A, Giannitti F, Riet-Correa F. Causes of abortion in dairy cows in Uruguay. PESQUISA VETERINÁRIA BRASILEIRA 2020. [DOI: 10.1590/1678-5150-pvb-6550] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
ABSTRACT: A case series study was conducted to determine the frequency of causes of abortion in dairy cattle in Uruguay. The sample size of 102 cases was composed of 53 fetuses, 35 fetuses with placentas, and 14 placentas without an associated fetus. All cases underwent gross and microscopic pathologic examinations as well as microbiological and serological testing. The etiology was determined in 54 (53%) of cases, 51 of which were caused by infectious agents. Within the observed 102 cases, 30 (29%) were caused by Neospora caninum, six (6%) by Coxiella burnetii and two (2%) by Campylobacter fetus subsp. venerealis. Bovine Parainfluenza-3 virus and Salmonella enterica serovar Newport caused one abortion each. Opportunistic bacteria (Escherichia coli, Streptococcus sp., Staphylococcus sp., Mannheimia sp., Trueperella pyogenes, and Providencia stuartii) were associated with 11 abortions. In two cases the fetal death was attributed to dystocia, and in one case the fetus had a congenital mesothelioma. Bovine viral diarrhea virus (BVDV) infection was identified in three fetuses; two of which were co-infected with and had typical lesions of N. caninum. No lesions were observed in the other fetus infected by BVDV. Leptospira interrogans was identified in one fetus without lesions. Despite the relatively low overall success rate in establishing an etiological diagnosis in cases of abortion in cattle, a systemic workup of bovine abortion is necessary to establish prevention and control strategies. This also facilitates monitoring and surveillance of reproductive diseases in dairy cattle, some of which represent a risk to public health.
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Affiliation(s)
- Melissa Macías-Rioseco
- Instituto Nacional de Investigación Agropecuaria, Uruguay; Universidad de la Republica, Uruguay
| | - Caroline Silveira
- Instituto Nacional de Investigación Agropecuaria, Uruguay; Universidad de la Republica, Uruguay
| | - Martin Fraga
- Instituto Nacional de Investigación Agropecuaria, Uruguay
| | - Laura Casaux
- Instituto Nacional de Investigación Agropecuaria, Uruguay; Universidad de la Republica, Uruguay
| | | | | | | | | | - Leticia Zarantonelli
- Institut Pasteur de Montevideo, Uruguay; Institut Pasteur de Montevideo, Uruguay
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10
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An extensive field study reveals the circulation of new genetic variants of subtype 1a of bovine viral diarrhea virus in Uruguay. Arch Virol 2019; 165:145-156. [PMID: 31745717 PMCID: PMC7222985 DOI: 10.1007/s00705-019-04446-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2019] [Accepted: 09/21/2019] [Indexed: 02/06/2023]
Abstract
Bovine viral diarrhea virus (BVDV) is a major pathogen worldwide, causing significant economic losses to the livestock sector. In Uruguay, BVDV seroprevalence at the farm level is >80%. In this work, 2546 serum, blood or tissue samples collected from animals suspected of being affected by BVD between 2015 and 2017 were analyzed by reverse transcription PCR and sequencing. Analysis of the BVDV genomic regions 5'UTR/Npro, Npro and E2 revealed that BVDV-1a, 1i and 2b circulate in the country, with BVDV-1a being the most prevalent subtype. Population dynamics studies revealed that BVDV-1a has been circulating in our herds since ~1990. This subtype began to spread and evolve, accumulating point mutations at a rate of 3.48 × 10-3 substitutions/site/year, acquiring specific genetic characteristics that gave rise to two local genetic lineages of BVDV-1a. These lineages are divergent from those circulating worldwide, as well as the vaccine strain currently used in Uruguay. The most notable differences between field and vaccine strains were found in the E2 glycoprotein, suggesting that the amino acid substitutions could result in failure of cross-protection/neutralization after vaccination. This is the first study that compares Uruguayan BVDV field and vaccine strains with other BVDV strains from throughout the world. The results obtained in this study will be very useful for developing a suitable immunization program for BVDV in Uruguay by identifying local field strains as candidates for vaccine development.
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11
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Diseases associated with bovine viral diarrhea virus subtypes 1a and 2b in beef and dairy cattle in Uruguay. Braz J Microbiol 2019; 51:357-368. [PMID: 31650465 PMCID: PMC7058746 DOI: 10.1007/s42770-019-00170-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 10/03/2019] [Indexed: 12/02/2022] Open
Abstract
Bovine viral diarrhea virus (BVDV, Pestivirus) causes significant economic losses to the livestock industry worldwide. Although serological surveys show that BVDV exposure is widespread in cattle in Uruguay, BVDV-associated diseases are greatly underreported. The aim of this work is to describe the epidemiological, clinical, pathological, and virological findings from spontaneous outbreaks of BVDV-associated diseases in cattle in Uruguay. Diagnostic investigations were performed during 6 spontaneous disease outbreaks on beef and dairy cattle farms in the departments of Colonia, Rio Negro, and Soriano between November 2016 and April 2018. Carcasses of 8 naturally deceased cattle from these outbreaks were necropsied and subjected to histological examination and immunohistochemistry to detect BVDV antigen in the tissues. Reverse transcription real-time PCR and genomic sequencing were also performed to identify BVDV at the species and subtype levels. Other ancillary diagnostic tests, including bacterial cultures, were performed on a case-by-case basis to rule in/out differential diagnoses based on initial clinicopathological presumptive diagnoses. BVDV-associated conditions that were diagnosed in the 8 cases included mucosal disease, transient postnatal BVDV infections associated with digestive/septicemic salmonellosis by Salmonella serovar typhimurium, Histophilus somni bronchopneumonia, urinary tract coinfections with Escherichia coli and Streptococcus sp., enteric coinfection with coccidia, and transplacental fetal infections and abortions with Neospora caninum coinfection. BVDV-1a and BVDV-2b were each identified in four of the eight cases. We conclude that BVDV-1a and BVDV-2b contribute significantly to disease and mortality in cattle in Uruguay. Future research should estimate the economic impact of BVDV in the Uruguayan livestock sector.
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12
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Pecora A, Perez Aguirreburualde MS, Ridpath JF, Dus Santos MJ. Molecular Characterization of Pestiviruses in Fetal Bovine Sera Originating From Argentina: Evidence of Circulation of HoBi-Like Viruses. Front Vet Sci 2019; 6:359. [PMID: 31681812 PMCID: PMC6805694 DOI: 10.3389/fvets.2019.00359] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Accepted: 09/30/2019] [Indexed: 12/03/2022] Open
Abstract
Serological evidence suggests that HoBi-like viruses, an emerging species within the Pestivirus genus of the Flaviviridae family, are in circulation in Argentina. While HoBi-like viruses were first isolated from Brazilian fetal bovine serum (FBS), no survey of Argentine FBS has been conducted. Therefore, 124 local samples of non-irradiated FBS originating from Argentina were surveyed for the presence of pestiviruses using RT-PCR. Amplicons from pestivirus positive samples were genotyped. Four samples were positive for HoBi virus-specific RT-PCR, while the BVDV-positive samples (n = 45) were classified as BVDV-1b (82.2%), BVDV-1a (13.3%), and BVDV-2 (4.5%). Virus isolation and serological profile assessment were performed for the four HoBi-positive FBS lots. These results confirm the circulation of HoBi-like virus in some regions of the Argentinean territory, highlighting the need to review the diagnostic techniques currently used in the clinical cases suspected of BVDV and in contamination control protocols for adventitious agents in cells and biotechnological products.
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Affiliation(s)
- Andrea Pecora
- Center of Veterinary Sciences and Agronomic Investigations, Institute of Virology, INTA, Buenos Aires, Argentina.,National Council for Scientific and Technical Research (CONICET), Buenos Aires, Argentina
| | | | | | - María José Dus Santos
- Center of Veterinary Sciences and Agronomic Investigations, Institute of Virology, INTA, Buenos Aires, Argentina.,National Council for Scientific and Technical Research (CONICET), Buenos Aires, Argentina
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13
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Macías-Rioseco M, Riet-Correa F, Miller MM, Sondgeroth K, Fraga M, Silveira C, Uzal FA, Giannitti F. Bovine abortion caused by Coxiella burnetii: report of a cluster of cases in Uruguay and review of the literature. J Vet Diagn Invest 2019; 31:634-639. [PMID: 31179891 DOI: 10.1177/1040638719856394] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022] Open
Abstract
A cluster of 4 bovine abortions caused by Coxiella burnetii occurred in a dairy herd in Uruguay during a 2-mo period. Case 1 consisted of a placenta from an aborted cow; cases 2-4 were fetuses and their placentas. Grossly, the placenta from one aborted cow had moderate, diffuse reddening of the cotyledons and loss of translucency of the intercotyledonary areas. No gross lesions were observed in the other 3 placentas. Microscopically, 2 of 4 placentas had fibrinonecrotizing placentitis with abundant intratrophoblastic gram-negative coccobacilli. C. burnetii was identified intralesionally by immunohistochemistry (IHC) in all 4 placentas, and by PCR and DNA sequencing in 3 placentas analyzed by these techniques. One fetus had mild neutrophilic alveolitis with multinucleate syncytial cells; no gross or microscopic lesions were observed in the other 2 fetuses examined. The lungs of the 3 fetuses were negative for C. burnetii by IHC. Tests performed to investigate other possible causes of abortions in the 4 cases were negative. C. burnetii causes Q fever in humans and coxiellosis in animals. Clusters of abortions in cattle by C. burnetii have not been reported previously, to our knowledge; this bacterium has been considered an opportunistic pathogen associated only with sporadic abortion in cattle. We present herein a cluster of 4 bovine abortions caused by C. burnetii in a dairy farm during a period of 2 mo and a review of the literature on C. burnetii infection in cattle.
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Affiliation(s)
- Melissa Macías-Rioseco
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Franklin Riet-Correa
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Myrna M Miller
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Kerry Sondgeroth
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Martin Fraga
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Caroline Silveira
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Francisco A Uzal
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
| | - Federico Giannitti
- Plataforma de Investigación en Salud Animal, Instituto Nacional de Investigación Agropecuaria, La Estanzuela, Colonia, Uruguay (Macías-Rioseco, Riet-Correa, Fraga, Silveira, Giannitti).,Facultad de Veterinaria, Universidad de la República, Montevideo, Uruguay (Macías-Rioseco, Riet-Correa).,California Animal Health and Food Safety Laboratory, University of California at Davis, San Bernardino, CA (Uzal).,Wyoming State Veterinary Diagnostic Laboratory, University of Wyoming, Laramie, WY (Miller, Sondgeroth).,Department of Veterinary Population Medicine, University of Minnesota, Saint Paul, MN (Giannitti)
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14
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de Oliveira Figueiredo P, de Oliveira DB, Figueiredo LB, Costa GB, Alves PA, Guedes MIMC, Barbosa-Stancioli EF, Drumond BP, Abrahão JS, Kroon EG, de Souza Trindade G. Molecular detection and phylogeny of bovine viral diarrhea virus 1 among cattle herds from Northeast, Southeast, and Midwest regions, Brazil. Braz J Microbiol 2019; 50:571-577. [PMID: 30879262 DOI: 10.1007/s42770-019-00064-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Accepted: 12/12/2018] [Indexed: 11/30/2022] Open
Abstract
We examined the circulating BVDV species and genotypes among cattle herds from Northeast, Southeast, and Midwest regions in Brazil. A total of 77 animals tested positive through standard PCR. Phylogenetic analyses revealed the presence of BVDV-1a, highlighting the need for better surveillance strategies to prevent BVDV spread in the country.
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Affiliation(s)
- Poliana de Oliveira Figueiredo
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil.
| | - Danilo Bretas de Oliveira
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil.,Faculdade de Medicina, Universidade Federal dos Vales do Jequitinhonha e Mucuri, Diamantina, MG, Brazil
| | - Leandra Barcelos Figueiredo
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Galileu Barbosa Costa
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Pedro Augusto Alves
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil.,Laboratório de Imunologia de Doenças Virais, Fundação Oswaldo Cruz, Centro de Pesquisas René Rachou, Belo Horizonte, MG, Brazil
| | - Maria Isabel Maldonado Coelho Guedes
- Laboratório de Pesquisa em Virologia Animal, Departamento de Medicina Veterinária Preventiva, Escola de Veterinária, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Edel Figueiredo Barbosa-Stancioli
- Laboratório de Virologia Básica e Aplicada, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Betânia Paiva Drumond
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Jônatas Santos Abrahão
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Erna Geessien Kroon
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil
| | - Giliane de Souza Trindade
- Laboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG, Brazil.
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15
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Quintero Barbosa J, Corredor Figueroa AP, Salas SS, Camargo H, Sanchéz A, Tobón J, Ortiz D, Schachtebeck E, Gutierrez MF. High prevalence of persistently infected animals from bovine viral diarrhea in Colombian cattle. BMC Vet Res 2019; 15:23. [PMID: 30630483 PMCID: PMC6327412 DOI: 10.1186/s12917-018-1769-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Accepted: 12/27/2018] [Indexed: 11/22/2022] Open
Abstract
Background Bovine Viral Diarrhea Virus (BVDV) is associated with gastrointestinal, respiratory and reproductive diseases of livestock across the world that causes continuous economic losses in the cattle industry. This virus can establish a persistent infection (PI) in calves after the fetal infection, making BVDV positive catle carriers and primary reservoirs which will constantly transmit the virus to healthy and new-born animals. For this reason, the detection of the PI animals in herds is the first line of prevention of the viral infection. Results In this study, PI animals were detected in five different regions of Colombia through RT-PCR techniques and confirmed by sequencing. BVDV genotypes were determined using one fragment of the 5’UTR. It was found a 7% BVDV prevalence in animals and 22% in farms; and genotype 1 was identified as a single genotype for all of the samples. All samples were BVDV 1a. Conclusion This is the first report in Colombia with higher prevalence rates compared with other places in the world, turned out to be of great importance for the ranchers, the vaccine producers and animal health control parties.
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Affiliation(s)
- Juan Quintero Barbosa
- Escuela de Biología, Universidad Industrial de Santander, Carrera 27 Calle 9, ed 45, Bucaramanga, Colombia
| | | | - Sandra S Salas
- Departamento de Microbiología, Pontificia Universidad Javeriana, Carrera 7 No. 40 - 62, Bogotá, Colombia
| | - Hugo Camargo
- Empresa Colombiana de Productos Veterinarios - VECOL, Av. Eldorado 82 -93, Bogotá, Colombia
| | - Alfredo Sanchéz
- Empresa Colombiana de Productos Veterinarios - VECOL, Av. Eldorado 82 -93, Bogotá, Colombia
| | - Julio Tobón
- Empresa Colombiana de Productos Veterinarios - VECOL, Av. Eldorado 82 -93, Bogotá, Colombia
| | - Diego Ortiz
- Corporación Colombiana de Investigación Agropecuaria - CORPOICA, Km 14 Vía Mosquera-Bogotá, Mosquera, Colombia
| | - Eric Schachtebeck
- Facultad de Veterinaria, Universidad Antonio Nariño, Carrera 3 Este # 47 A - 15, Bogotá, Colombia
| | - Maria Fernanda Gutierrez
- Departamento de Microbiología, Pontificia Universidad Javeriana, Carrera 7 No. 40 - 62, Bogotá, Colombia.
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16
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Sun X, Gao Y, Wang X, Hu G, Wang Y, Feng B, Hu Y, Mu X, Zhang Y, Dong H. Escherichia coli O 101-induced diarrhea develops gut microbial dysbiosis in rats. Exp Ther Med 2018; 17:824-834. [PMID: 30651869 DOI: 10.3892/etm.2018.6997] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Accepted: 07/06/2018] [Indexed: 12/15/2022] Open
Abstract
Enterotoxigenic Escherichia coli (ETEC)-induced diarrhea is a devastating disease and one of the third leading causes of infectious disease-associated mortalities worldwide. Despite recent advances in the identification of the association between gut microbiota and diarrhea, a lack of understanding exists on the status of gut microbiota in rats treated with ETEC. In the present study, a rat model of Escherichia (E.) coli O101-induced diarrhea was established. The diarrhea incidence and index, as well as histological changes, were assessed. In addition, Illumina MiSeq sequencing of V3-V4 hypervariable regions of 16S ribosomal RNA was employed to investigate the changes in the gut microbiota profiles in the feces of the diarrhea rats. The results indicated that E. coli O101 increased the diarrhea index and injury in the intestinal tissues, whereas it decreased the bacterial richness and shifted the distribution pattern of the bacterial communities in the phylum, order and genus levels in the fecal samples. Notably, the proportion of bacteria Prevotella, Enterococcus and Akkermansia was significantly decreased, while the pathogenic bacteria Escherichia/Shigella were significantly increased in diarrhea rats. Taken together, the gut microbiota is closely associated with E. coli O101-induced diarrhea in lower microbial diversity and dysbiosis of gut microbiota at different taxonomical levels.
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Affiliation(s)
- Xiangwan Sun
- Beijing Key Laboratory of Traditional Chinese Veterinary Medicine, Beijing University of Agriculture, Beijing 102206, P.R. China
| | - Ying Gao
- Department of Biology, Tennessee Center for Botanical Medicine Research, Middle Tennessee State University, Murfreesboro, TN 37132-0001, USA
| | - Xin Wang
- Beijing Key Laboratory of Traditional Chinese Veterinary Medicine, Beijing University of Agriculture, Beijing 102206, P.R. China
| | - Ge Hu
- Beijing Key Laboratory of Traditional Chinese Veterinary Medicine, Beijing University of Agriculture, Beijing 102206, P.R. China
| | - Yun Wang
- Beijing Key Laboratory of Traditional Chinese Veterinary Medicine, Beijing University of Agriculture, Beijing 102206, P.R. China
| | - Bo Feng
- College of Veterinary Medicine, China Agricultural University, Beijing 100083, P.R. China
| | - Yanxin Hu
- College of Veterinary Medicine, China Agricultural University, Beijing 100083, P.R. China
| | - Xiang Mu
- Beijing Key Laboratory of Traditional Chinese Veterinary Medicine, Beijing University of Agriculture, Beijing 102206, P.R. China
| | - Ying Zhang
- School of Chinese Herbal Medicine, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, P.R. China
| | - Hong Dong
- Beijing Key Laboratory of Traditional Chinese Veterinary Medicine, Beijing University of Agriculture, Beijing 102206, P.R. China
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17
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Glotov AG, Koteneva SV, Glotova TI, Yuzhakov AG, Maksyutov RA, Zaberezhnyy AD. PHYLOGENETIC ANALYSIS OF BOVINE PESTIVIRUSES DETECTED IN SIBERIA. Vopr Virusol 2018; 63:185-191. [PMID: 36494975 DOI: 10.18821/0507-4088-2018-63-4-185-191] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Indexed: 12/13/2022]
Abstract
The results of phylogenetic analysis of three species of bovine pestiviruses circulating in six regions of Siberia, as well as those detected in fetal embryonic serum (FBS) and continuous cell cultures, are presented. The typing was made based on comparison of sequences from the 5' untranslated region (5'-UTR) of the viral genome. Among the highly productive dairy cattle, circulation of five subtypes of the BVDV1 (a, b, d, f, r) and BVDV2 was established. The predominant subtype was 1b (48% positive samples). The number of subtypes of BVDV1 was as follows: BVDV1: 1а (8%), 1b (48%), 1d (8%), 1f (16%) и 1r (8%) and BVDV2 (12%). Cell cultures revealed BVDV1a. The distribution of types and subtypes of viruses had geographical differences. BVDV1b, BVDV1d, BVDV1f и BVDV1r were detected in cattle or persistently infected (PI) animals in farms with respiratory distress. BVDV 1a revealed in the serum of PI heifer without manifestation of clinical symptoms. BVDV2 were detected in cattle with pathology of reproduction. The presence of the BVDV3 (atypical pestivirus) of the Italian group was established in seven lots of FBS obtained from two manufacturers. No evidence has been found for circulating of the atypical virus among cattle of various breeds, including imported, reindeers and red deers. Studies on the molecular epizootology of pestiviruses can be used to select and optimize the control strategy and address the issue of vaccine use in a particular region.
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Affiliation(s)
- A G Glotov
- Siberian Federal Scientific Centre of Agro-biotechnologies, Institute of Experimental Veterinary Science of Siberia and the Far East
| | - S V Koteneva
- Siberian Federal Scientific Centre of Agro-biotechnologies, Institute of Experimental Veterinary Science of Siberia and the Far East
| | - T I Glotova
- Siberian Federal Scientific Centre of Agro-biotechnologies, Institute of Experimental Veterinary Science of Siberia and the Far East
| | - A G Yuzhakov
- D.I. Ivanovsky Institute of Virology, «National Research Center for Epidemiology and Microbiology named after the honorary academician N.F. Gamaleya»
| | - R A Maksyutov
- State Research Center of Virology and Biotechnology Vector
| | - A D Zaberezhnyy
- All-Russian Research Institute of Experimental Veterinary Medicine named after Ya.R. Kovalenko
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18
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Tao J, Li B, Chen J, Zhang C, Ma Y, Zhu G, Liu H. N pro His49 and E rns Lys412 mutations in pig bovine viral diarrhea virus type 2 synergistically enhance the cellular antiviral response. Virus Genes 2017; 54:57-66. [PMID: 28852929 DOI: 10.1007/s11262-017-1506-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2017] [Accepted: 08/17/2017] [Indexed: 01/01/2023]
Abstract
Type I interferons are major components of the innate immune response of hosts, and accordingly, many viruses have evolved mechanisms to modulate the host response during infection. Bovine viral diarrhea virus (BVDV) nonstructural protein Npro and structural protein Erns play important roles in inhibiting type I interferon. The aim of this study was to explore the epistatic effects of amino acid mutations in Npro and Erns in porcine ST cells to characterize the immune response induced by BVDV-2. Plasmids with mutant amino acids His49 (H49), Glu22 (E22) in Npro, and His300 (H300), Lys412 (K412) in Erns which had been changed to Alanine (A) had similar effects on type I interferon production in MDBK and ST cells, but resulted in much greater ISG15, OAS, and Mx production in ST cells. The rescued vASH/NproH49ErnsK412 virus showed the best efficiency with respect to modulating antiviral cytokines, indicating that the amino acids Npro H49 and Erns K412 had highly synergistic effects in abolishing the ability to inhibit type I interferon. These findings have importance practical implications owing to the increasing prevalence of BVDV infections, including persistent infections, in domestic pigs.
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Affiliation(s)
- Jie Tao
- Institute of Animal Science and Veterinary Medicine, Shanghai Academy of Agricultural Sciences, Shanghai Engineering Research Center of Breeding Pig, BeiDi Rd 2901, Shanghai, 201106, China.,Municipal Key Laboratory of Agri-Genetics and Breedings, Shanghai, 201106, China
| | - Benqiang Li
- Institute of Animal Science and Veterinary Medicine, Shanghai Academy of Agricultural Sciences, Shanghai Engineering Research Center of Breeding Pig, BeiDi Rd 2901, Shanghai, 201106, China.,Municipal Key Laboratory of Agri-Genetics and Breedings, Shanghai, 201106, China
| | - Jinghua Chen
- Institute of Animal Science and Veterinary Medicine, Shanghai Academy of Agricultural Sciences, Shanghai Engineering Research Center of Breeding Pig, BeiDi Rd 2901, Shanghai, 201106, China.,Municipal Key Laboratory of Agri-Genetics and Breedings, Shanghai, 201106, China
| | - Chunling Zhang
- Institute of Animal Science and Veterinary Medicine, Shanghai Academy of Agricultural Sciences, Shanghai Engineering Research Center of Breeding Pig, BeiDi Rd 2901, Shanghai, 201106, China.,Municipal Key Laboratory of Agri-Genetics and Breedings, Shanghai, 201106, China
| | - Yufei Ma
- Institute of Animal Science and Veterinary Medicine, Shanghai Academy of Agricultural Sciences, Shanghai Engineering Research Center of Breeding Pig, BeiDi Rd 2901, Shanghai, 201106, China.,Municipal Key Laboratory of Agri-Genetics and Breedings, Shanghai, 201106, China
| | - Guoqiang Zhu
- College of Veterinary Medicine, and Jiangsu Co-innovation Center for Prevention and Control of Important Animal Infectious Diseases and Zoonoses, Yangzhou University, Yangzhou, 225009, China
| | - Huili Liu
- Institute of Animal Science and Veterinary Medicine, Shanghai Academy of Agricultural Sciences, Shanghai Engineering Research Center of Breeding Pig, BeiDi Rd 2901, Shanghai, 201106, China. .,Municipal Key Laboratory of Agri-Genetics and Breedings, Shanghai, 201106, China.
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19
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Silveira S, Baumbach LF, Weber MN, Mósena ACS, da Silva MS, Cibulski SP, Borba MR, Maia RD, Coimbra VCS, de Moraes GM, Ridpath JF, Canal CW. HoBi-like is the most prevalent ruminant pestivirus in Northeastern Brazil. Transbound Emerg Dis 2017; 65:e113-e120. [DOI: 10.1111/tbed.12689] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Indexed: 12/25/2022]
Affiliation(s)
- S. Silveira
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - L. F. Baumbach
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - M. N. Weber
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - A. C. S. Mósena
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - M. S. da Silva
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - S. P. Cibulski
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - M. R. Borba
- Laboratório de Epidemiologia Veterinária (EPILAB); Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
| | - R. D. Maia
- Instituto de Defesa e Inspeção Agropecuária do Rio Grande do Norte (IDIARN); Natal Rio Grande do Norte Brazil
| | - V. C. S. Coimbra
- Agência Estadual de Defesa Agropecuária do Maranhão (AGED-MA); São Luís Maranhão Brazil
| | - G. M. de Moraes
- Ministério da Agricultura; Pecuária e Abastecimento; Brasília Distrito Federal Brazil
| | - J. F. Ridpath
- Ruminant Diseases and Immunology Unit; National Animal Disease Center/ARS/USDA; Ames IA USA
| | - C. W. Canal
- Laboratório de Virologia; Faculdade de Veterinária; Universidade Federal do Rio Grande do Sul (UFRGS); Porto Alegre Rio Grande do Sul Brazil
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20
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Li T, Huang M, Xiao H, Zhang G, Ding J, Wu P, Zhang H, Sheng J, Chen C. Selection and characterization of specific nanobody against bovine virus diarrhea virus (BVDV) E2 protein. PLoS One 2017; 12:e0178469. [PMID: 28582444 PMCID: PMC5459339 DOI: 10.1371/journal.pone.0178469] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2017] [Accepted: 05/13/2017] [Indexed: 01/15/2023] Open
Abstract
Bovine viral diarrhea-mucosal disease (BVD-MD) is caused by bovine viral diarrhea virus (BVDV), and results in abortion, stillbirth, and fetal malformation in cows. Here, we constructed the phage display vector pCANTAB 5E-VHH and then transformed it into Escherichia coli TG1-competent cells, to construct an initial anti-BVDV nanobody gene library. We obtained a BVDV-E2 antigen epitope bait protein by prokaryotic expression using the nucleotide sequence of the E2 gene of the BVDV-NADL strain published in GenBank. Phage display was used to screen the anti-BVDV nanobody gene library. We successfully constructed a high quality phage display nanobody library, with an initial library capacity of 4.32×105. After the rescue of helper phage, the titer of the phage display nanobody library was 1.3×1011. The BVDV-E2 protein was then expressed in Escherichia coli (DE3), and a 49.5 kDa band was observed with SDS-PAGE analysis that was consistent with the expected nanobody size. Thus, we were able to isolate one nanobody that exhibits high affinity and specificity against BVDV using phage display techniques. This isolated nanobody was then used in Enzyme Linked Immunosorbent Assay and qRT-PCR, and ELISA analyses of BVDV infection of MDBK cells indicated that the nanobodies exhibited good antiviral effect.
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Affiliation(s)
- Tiansen Li
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
| | - Meiling Huang
- Shihezi University Library, Shihezi University, Shihezi, Xinjiang, China
| | - Hongran Xiao
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
| | - Guoqi Zhang
- College of Life Science, Shihezi University, Shihezi, Xinjiang, China
| | - Jinhua Ding
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
| | - Peng Wu
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
| | - Hui Zhang
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
| | - Jinliang Sheng
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
| | - Chuangfu Chen
- College of Animal Science and Technology, Shihezi University, Shihezi, Xinjiang, China
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21
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Yeşilbağ K, Alpay G, Becher P. Variability and Global Distribution of Subgenotypes of Bovine Viral Diarrhea Virus. Viruses 2017; 9:v9060128. [PMID: 28587150 PMCID: PMC5490805 DOI: 10.3390/v9060128] [Citation(s) in RCA: 150] [Impact Index Per Article: 21.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2017] [Revised: 05/18/2017] [Accepted: 05/19/2017] [Indexed: 12/03/2022] Open
Abstract
Bovine viral diarrhea virus (BVDV) is a globally-distributed agent responsible for numerous clinical syndromes that lead to major economic losses. Two species, BVDV-1 and BVDV-2, discriminated on the basis of genetic and antigenic differences, are classified in the genus Pestivirus within the Flaviviridae family and distributed on all of the continents. BVDV-1 can be segregated into at least twenty-one subgenotypes (1a–1u), while four subgenotypes have been described for BVDV-2 (2a–2d). With respect to published sequences, the number of virus isolates described for BVDV-1 (88.2%) is considerably higher than for BVDV-2 (11.8%). The most frequently-reported BVDV-1 subgenotype are 1b, followed by 1a and 1c. The highest number of various BVDV subgenotypes has been documented in European countries, indicating greater genetic diversity of the virus on this continent. Current segregation of BVDV field isolates and the designation of subgenotypes are not harmonized. While the species BVDV-1 and BVDV-2 can be clearly differentiated independently from the portion of the genome being compared, analysis of different genomic regions can result in inconsistent assignment of some BVDV isolates to defined subgenotypes. To avoid non-conformities the authors recommend the development of a harmonized system for subdivision of BVDV isolates into defined subgenotypes.
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Affiliation(s)
- Kadir Yeşilbağ
- Department of Virology, Faculty of Veterinary Medicine, Uludag University, TR-16059 Bursa, Turkey.
| | - Gizem Alpay
- Department of Virology, Faculty of Veterinary Medicine, Uludag University, TR-16059 Bursa, Turkey.
| | - Paul Becher
- Institute for Virology, Department of Infectious Diseases, University of Veterinary Medicine, D-30559 Hannover, Germany.
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22
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Abstract
Pestiviruses are a group of viruses of veterinary importance infecting livestock animals like pigs, cattle, and sheep, and also wildlife animals like wild boar and different deer species. While for decades only four classical species (Classical swine fever virus, Bovine viral diarrhea virus types 1 and 2, Border disease virus), and a few so-called atypical pestiviruses were known (e.g., Giraffe virus, Pronghorn virus, HoBi virus), a series of novel pestiviruses was identified in the last years (Bungowannah virus, Bat pestivirus, Norway rat pestivirus, Atypical porcine pestivirus, LINDA virus). The Australian Bungowannah virus could be isolated and further characterized by classical sequencing, but all the other latest novel pestiviruses were identified by metagenomics using next-generation sequencing technologies. Here, we describe these new viruses and their discovery and characterization. Differentiation is made between the occurrence of classical pestiviruses in new species and novel viruses or virus types.
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Affiliation(s)
- Sandra Blome
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany.
| | - Martin Beer
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
| | - Kerstin Wernike
- Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany
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23
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Genomic characterization of a bovine viral diarrhea virus subtype 1i in Brazil. Arch Virol 2016; 162:1119-1123. [DOI: 10.1007/s00705-016-3199-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Accepted: 12/06/2016] [Indexed: 10/20/2022]
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24
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O'Brien E, Garvey M, Walsh C, Arkins S, Cullinane A. Genetic typing of bovine viral diarrhoea virus in cattle on Irish farms. Res Vet Sci 2016; 111:14-20. [PMID: 28266314 DOI: 10.1016/j.rvsc.2016.10.017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Revised: 10/03/2016] [Accepted: 10/30/2016] [Indexed: 01/10/2023]
Abstract
The aim was to carry out a phylogenetic study of bovine viral diarrhoea viruses (BVDV) circulating in Irish cattle herds from 2011 to 2014. Three hundred and twenty five viruses from 267 herds were subtyped by nucleotide sequence analysis of the 5'UTR and/or the Npro regions. All viruses investigated in this study belonged to species BVDV-1 with BVDV-1a as the prominent subtype (97%). Subtypes BVDV-1b, BVDV-1d and BVDV-1e were also identified for the first time in Ireland. Pairwise alignments of 225 viruses with complete sequences for the 5'UTR and the Npro regions were performed to determine a low conflict threshold for virus strain demarcation. One hundred and seventy seven unique virus strains were identified. The study revealed significant levels of herd specific clustering of strains but no geographical or temporal clustering. Similar virus strains were identified in different counties, provinces and years indicating the potential to investigate the epidemiology of the disease by combining sequence analysis with animal movement data.
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Affiliation(s)
- Eoin O'Brien
- Virology Unit, The Irish Equine Centre, Johnstown, Naas, Co. Kildare, Ireland
| | - Marie Garvey
- Virology Unit, The Irish Equine Centre, Johnstown, Naas, Co. Kildare, Ireland
| | - Cathal Walsh
- Department of Mathematics & Statistics, University of Limerick, Limerick, Ireland
| | - Sean Arkins
- Department of Life Sciences, University of Limerick, Limerick, Ireland
| | - Ann Cullinane
- Virology Unit, The Irish Equine Centre, Johnstown, Naas, Co. Kildare, Ireland.
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