1
|
Sacristán C, Ewbank AC, Duarte-Benvenuto A, Sacristán I, Zamana-Ramblas R, Costa-Silva S, Lanes Ribeiro V, Bertozzi CP, Del Rio do Valle R, Castilho PV, Colosio AC, Marcondes MCC, Lailson-Brito J, de Freitas Azevedo A, Carvalho VL, Pessi CF, Cremer M, Esperón F, Catão-Dias JL. Survey of selected viral agents (herpesvirus, adenovirus and hepatitis E virus) in liver and lung samples of cetaceans, Brazil. Sci Rep 2024; 14:2689. [PMID: 38302481 PMCID: PMC10834590 DOI: 10.1038/s41598-023-45315-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 10/18/2023] [Indexed: 02/03/2024] Open
Abstract
Hepatic and pulmonary lesions are common in cetaceans, despite their poorly understood viral etiology. Herpesviruses (HV), adenoviruses (AdV) and hepatitis E virus (HEV) are emerging agents in cetaceans, associated with liver and/or pulmonary damage in mammals. We isolated and molecularly tested DNA for HV and AdV (n = 218 individuals; 187 liver and 108 lung samples) and RNA for HEV (n = 147 animals; 147 liver samples) from six cetacean families. All animals stranded or were bycaught in Brazil between 2001 and 2021. Positive-animals were analyzed by histopathology. Statistical analyses assessed if the prevalence of viral infection could be associated with the variables: species, family, habitat, region, sex, and age group. All samples were negative for AdV and HEV. Overall, 8.7% (19/218) of the cetaceans were HV-positive (4.8% [9/187] liver and 11.1% [12/108] lung), without HV-associated lesions. HV-prevalence was statistically significant higher in Pontoporiidae (19.2%, 10/52) when compared to Delphinidae (4.1%, 5/121), and in southeastern (17.1%, 13/76)-the most industrialized Brazilian region-when compared to the northeastern region (2.4%, 3/126). This study broadens the herpesvirus host range in cetaceans, including its description in pygmy sperm whales (Kogia breviceps) and humpback whales (Megaptera novaeangliae). Further studies must elucidate herpesvirus drivers in cetaceans.
Collapse
Affiliation(s)
- C Sacristán
- Centro de Investigación en Sanidad Animal (CISA-INIA), CSIC, Carretera Algete-El Casar de Talamanca, Km. 8,1, 28130, Valdeolmos, Madrid, Spain.
- School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, SP, Brazil.
| | - A C Ewbank
- School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, SP, Brazil
| | - A Duarte-Benvenuto
- School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, SP, Brazil
| | - I Sacristán
- Centro de Investigación en Sanidad Animal (CISA-INIA), CSIC, Carretera Algete-El Casar de Talamanca, Km. 8,1, 28130, Valdeolmos, Madrid, Spain
| | - R Zamana-Ramblas
- School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, SP, Brazil
| | - S Costa-Silva
- School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, SP, Brazil
| | | | - C P Bertozzi
- São Paulo State University - UNESP, São Vicente, SP, Brazil
| | - R Del Rio do Valle
- Instituto Ecoema de Estudo e Conservação do Meio Ambiente, Peruíbe, SP, Brasil
| | - P V Castilho
- Universidade do Estado de Santa Catarina-UDESC, Laguna, SC, Brazil
| | - A C Colosio
- Instituto Baleia Jubarte, Caravelas, BA, Brazil
| | | | - J Lailson-Brito
- Laboratório de Mamíferos Aquáticos e Bioindicadores 'Profa Izabel M. G. do N. Gurgel' (MAQUA), Faculdade de Oceanografia, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - A de Freitas Azevedo
- Laboratório de Mamíferos Aquáticos e Bioindicadores 'Profa Izabel M. G. do N. Gurgel' (MAQUA), Faculdade de Oceanografia, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, RJ, Brazil
| | - V L Carvalho
- Associação de Pesquisa e Preservação de Ecossistemas Aquáticos, Caucaia, CE, Brazil
| | - C F Pessi
- Instituto de Pesquisas Cananéia (IpeC), Cananéia, SP, Brazil
| | - M Cremer
- Laboratório de Ecologia e Conservação de Tetrápodes Marinhos e Costeiros - TETRAMAR, Universidade da Região de Joinville - UNIVILLE, São Francisco Do Sul, SC, Brazil
| | - F Esperón
- Universidad Europea, Villaviciosa de Odon, Spain
| | - J L Catão-Dias
- School of Veterinary Medicine and Animal Sciences, University of São Paulo, São Paulo, SP, Brazil
| |
Collapse
|
2
|
Herpesvirus and adenovirus surveillance in threatened wild West Indian (Trichechus manatus) and Amazonian manatees (Trichechus inunguis), Brazil. Acta Trop 2022; 237:106740. [DOI: 10.1016/j.actatropica.2022.106740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 10/26/2022] [Accepted: 10/31/2022] [Indexed: 11/07/2022]
|
3
|
Jo WK, van Elk C, van de Bildt M, van Run P, Petry M, Jesse ST, Jung K, Ludlow M, Kuiken T, Osterhaus A. An evolutionary divergent pestivirus lacking the N pro gene systemically infects a whale species. Emerg Microbes Infect 2020; 8:1383-1392. [PMID: 31526243 PMCID: PMC6758615 DOI: 10.1080/22221751.2019.1664940] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Abstract
Pestiviruses typically infect members of the order Artiodactyla, including ruminants and pigs, although putative rat and bat pestiviruses have also been described. In the present study, we identified and characterized an evolutionary divergent pestivirus in the toothed whale species, harbour porpoise (Phocoena phocoena). We tentatively named the virus Phocoena pestivirus (PhoPeV). PhoPeV displays a typical pestivirus genome organization except for the unique absence of Npro, an N-terminal autoprotease that targets the innate host immune response. Evolutionary evidence indicates that PhoPeV emerged following an interspecies transmission event from an ancestral pestivirus that expressed Npro. We show that 9% (n = 10) of stranded porpoises from the Dutch North Sea coast (n = 112) were positive for PhoPeV and they displayed a systemic infection reminiscent of non-cytopathogenic persistent pestivirus infection. The identification of PhoPeV extends the host range of pestiviruses to cetaceans (dolphins, whales, porpoises), which are considered to have evolved from artiodactyls (even-toed ungulates). Elucidation of the pathophysiology of PhoPeV infection and Npro unique absence will add to our understanding of molecular mechanisms governing pestivirus pathogenesis.
Collapse
Affiliation(s)
- Wendy K Jo
- Research Center Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover , Hannover , Germany
| | - Cornelis van Elk
- Department Viroscience, Erasmus MC Rotterdam , Rotterdam , The Netherlands
| | - Marco van de Bildt
- Department Viroscience, Erasmus MC Rotterdam , Rotterdam , The Netherlands
| | - Peter van Run
- Department Viroscience, Erasmus MC Rotterdam , Rotterdam , The Netherlands
| | - Monique Petry
- Research Center Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover , Hannover , Germany
| | - Sonja T Jesse
- Research Center Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover , Hannover , Germany
| | - Klaus Jung
- Institute for Animal Breeding and Genetics, University of Veterinary Medicine Hannover , Hannover , Germany
| | - Martin Ludlow
- Research Center Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover , Hannover , Germany
| | - Thijs Kuiken
- Research Center Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover , Hannover , Germany
| | - Albert Osterhaus
- Research Center Emerging Infections and Zoonoses (RIZ), University of Veterinary Medicine Hannover , Hannover , Germany
| |
Collapse
|
4
|
Emelianchik A, Rodrigues TCS, Subramaniam K, Nielsen O, Burek-Huntington KA, Rotstein D, Popov VL, Stone D, Waltzek TB. Characterization of a novel rhabdovirus isolated from a stranded harbour porpoise (Phocoena phocoena). Virus Res 2019; 273:197742. [PMID: 31499088 DOI: 10.1016/j.virusres.2019.197742] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2019] [Revised: 09/05/2019] [Accepted: 09/06/2019] [Indexed: 11/28/2022]
Abstract
An adult male harbour porpoise (Phocoena phocoena) stranded off the coast of Alaska displaying poor body condition, scattered mild ulcerative dermatitis, and necrotizing balanoposthitis. Necropsy findings included severe verminous panniculitis, pneumonia, hepatitis, and enteritis. Histopathological examination of skin lesions revealed a pustular epidermitis and dermatitis, with ballooning degeneration of keratinocytes and occasional amphophilic intracytoplasmic inclusion bodies. A swab sample collected from the ulcerative penile lesions was processed for virus isolation resulting in cytopathic effects observed in primary beluga whale kidney (BWK) cells. Transmission electron microscopy revealed bullet-shaped virions budding from the cell surface of infected BWK cells consistent with a rhabdovirus. A cDNA library was prepared using RNA extracted from infected cell culture supernatant and sequenced on an Illumina MiSeq sequencer. The near-complete genome of a novel rhabdovirus was recovered. Genetic and phylogenetic analyses based on the complete L gene supported the harbour porpoise rhabdovirus (HPRV) as a new species. HPRV clustered phylogenetically with dolphin rhabdovirus (DRV) and this cetacean rhabdovirus clade was found to be the sister group to members of the genus Perhabdovirus that infect fish. A specific nested RT-PCR assay detected HPRV RNA in the epaxial musculature of the harbour porpoise. Our results are consistent with a previous hypothesis that cetacean rhabdoviruses may have arisen following a host jump from fish and suggest that DRV and HPRV represent separate species belonging in a new genus within the family Rhabdoviridae. Further research is needed to determine the health impact of HPRV in harbour porpoise populations, its prevalence, and route of transmission.
Collapse
Affiliation(s)
| | | | | | - Ole Nielsen
- Department of Fisheries & Oceans Canada, 501 University Crescent, Winnipeg, Manitoba, Canada
| | | | - David Rotstein
- Marine Mammal Pathology Services, 19117 Bloomfield Road, 20832, Olney, Maryland, USA
| | - Vsevolod L Popov
- Department of Pathology, University of Texas Medical Branch, 301 University Boulevard, 77555-0609, Galveston, Texas, USA
| | - David Stone
- Centre for Environment, Fisheries and Aquaculture Science (CEFAS), Weymouth, DT4 8UB, UK
| | - Thomas B Waltzek
- University of Florida, 2187 Mowry Road, 32611, Gainesville, Florida, USA.
| |
Collapse
|
5
|
Common midwife toad ranaviruses replicate first in the oral cavity of smooth newts (Lissotriton vulgaris) and show distinct strain-associated pathogenicity. Sci Rep 2019; 9:4453. [PMID: 30872735 PMCID: PMC6418247 DOI: 10.1038/s41598-019-41214-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Accepted: 02/28/2019] [Indexed: 11/08/2022] Open
Abstract
Ranavirus is the second most common infectious cause of amphibian mortality. These viruses affect caudates, an order in which information regarding Ranavirus pathogenesis is scarce. In the Netherlands, two strains (CMTV-NL I and III) were suspected to possess distinct pathogenicity based on field data. To investigate susceptibility and disease progression in urodeles and determine differences in pathogenicity between strains, 45 adult smooth newts (Lissotriton vulgaris) were challenged via bath exposure with these ranaviruses and their detection in organs and feces followed over time by PCR, immunohistochemistry and in situ hybridization. Ranavirus was first detected at 3 days post infection (p.i.) in the oral cavity and upper respiratory mucosa. At 6 days p.i, virus was found in connective tissues and vasculature of the gastrointestinal tract. Finally, from 9 days p.i onwards there was widespread Ranavirus disease in various organs including skin, kidneys and gonads. Higher pathogenicity of the CMTV-NL I strain was confirmed by higher correlation coefficient of experimental group and mortality of challenged animals. Ranavirus-exposed smooth newts shed virus in feces intermittently and infection was seen in the absence of lesions or clinical signs, indicating that this species can harbor subclinical infections and potentially serve as disease reservoirs.
Collapse
|
6
|
|
7
|
Díaz-Delgado J, Fernández A, Sierra E, Sacchini S, Andrada M, Vela AI, Quesada-Canales Ó, Paz Y, Zucca D, Groch K, Arbelo M. Pathologic findings and causes of death of stranded cetaceans in the Canary Islands (2006-2012). PLoS One 2018; 13:e0204444. [PMID: 30289951 PMCID: PMC6173391 DOI: 10.1371/journal.pone.0204444] [Citation(s) in RCA: 56] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Accepted: 09/07/2018] [Indexed: 12/11/2022] Open
Abstract
This study describes the pathologic findings and most probable causes of death (CD) of 224 cetaceans stranded along the coastline of the Canary Islands (Spain) over a 7-year period, 2006-2012. Most probable CD, grouped as pathologic categories (PCs), was identified in 208/224 (92.8%) examined animals. Within natural PCs, those associated with good nutritional status represented 70/208 (33.6%), whereas, those associated with significant loss of nutritional status represented 49/208 (23.5%). Fatal intra- and interspecific traumatic interactions were 37/208 (17.8%). Vessel collisions included 24/208 (11.5%). Neonatal/perinatal pathology involved 13/208 (6.2%). Fatal interaction with fishing activities comprised 10/208 (4.8%). Within anthropogenic PCs, foreign body-associated pathology represented 5/208 (2.4%). A CD could not be determined in 16/208 (7.7%) cases. Natural PCs were dominated by infectious and parasitic disease processes. Herein, our results suggest that between 2006 and 2012, in the Canary Islands, direct human activity appeared responsible for 19% of cetaceans deaths, while natural pathologies accounted for 81%. These results, integrating novel findings and published reports, aid in delineating baseline knowledge on cetacean pathology and may be of value to rehabilitators, caregivers, diagnosticians and future conservation policies.
Collapse
Affiliation(s)
- Josué Díaz-Delgado
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
- Wildlife Comparative Pathology Laboratory, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, Brazil
| | - Antonio Fernández
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Eva Sierra
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Simona Sacchini
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Marisa Andrada
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Ana Isabel Vela
- Department of Animal Health, Veterinary College, Complutense University, Madrid, Spain
- Centro de Vigilancia Sanitaria Veterinaria (VISAVET). Complutense University, Madrid, Spain
| | - Óscar Quesada-Canales
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Yania Paz
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Daniele Zucca
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| | - Kátia Groch
- Wildlife Comparative Pathology Laboratory, School of Veterinary Medicine and Animal Science, University of São Paulo, São Paulo, Brazil
| | - Manuel Arbelo
- Veterinary Histology and Pathology, Institute of Animal Health and Food Hygiene (IUSA), University of Las Palmas of Gran Canaria, Las Palmas of Gran Canaria, Spain
| |
Collapse
|
8
|
Autenrieth M, Hartmann S, Lah L, Roos A, Dennis AB, Tiedemann R. High-quality whole-genome sequence of an abundant Holarctic odontocete, the harbour porpoise (Phocoena phocoena). Mol Ecol Resour 2018; 18:1469-1481. [PMID: 30035363 DOI: 10.1111/1755-0998.12932] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2017] [Revised: 07/04/2018] [Accepted: 07/05/2018] [Indexed: 11/27/2022]
Abstract
The harbour porpoise (Phocoena phocoena) is a highly mobile cetacean found across the Northern hemisphere. It occurs in coastal waters and inhabits basins that vary broadly in salinity, temperature and food availability. These diverse habitats could drive subtle differentiation among populations, but examination of this would be best conducted with a robust reference genome. Here, we report the first harbour porpoise genome, assembled de novo from an individual originating in the Kattegat Sea (Sweden). The genome is one of the most complete cetacean genomes currently available, with a total size of 2.39 Gb and 50% of the total length found in just 34 scaffolds. Using 122 of the longest scaffolds, we were able to show high levels of synteny with the genome of the domestic cattle (Bos taurus). Our draft annotation comprises 22,154 predicted genes, which we further annotated through matches to the NCBI nucleotide database, GO categorization and motif prediction. Within the predicted genes, we have confirmed the presence of >20 genes or gene families that have been associated with adaptive evolution in other cetaceans. Overall, this genome assembly and draft annotation represent a crucial addition to the genomic resources currently available for the study of porpoises and Phocoenidae evolution, phylogeny and conservation.
Collapse
Affiliation(s)
- Marijke Autenrieth
- Institute of Biochemistry and Biology, Evolutionary Biology/Systematic Zoology, University of Potsdam, Potsdam, Germany
| | - Stefanie Hartmann
- Institute of Biochemistry and Biology, Evolutionary Adaptive Genomics, University of Potsdam, Potsdam, Germany
| | - Ljerka Lah
- Institute of Biochemistry and Biology, Evolutionary Biology/Systematic Zoology, University of Potsdam, Potsdam, Germany
| | - Anna Roos
- Swedish Museum of Natural History, Stockholm, Sweden
| | - Alice B Dennis
- Institute of Biochemistry and Biology, Evolutionary Biology/Systematic Zoology, University of Potsdam, Potsdam, Germany
| | - Ralph Tiedemann
- Institute of Biochemistry and Biology, Evolutionary Biology/Systematic Zoology, University of Potsdam, Potsdam, Germany
| |
Collapse
|
9
|
PHYLOGENETIC ANALYSIS OF THE GENOME OF AN ENTERITIS-ASSOCIATED BOTTLENOSE DOLPHIN MASTADENOVIRUS SUPPORTS A CLADE INFECTING THE CETARTIODACTYLA. J Wildl Dis 2017; 54:112-121. [PMID: 29077545 DOI: 10.7589/2017-03-052] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
: Adenoviruses are nonenveloped, double-stranded DNA viruses, known to infect members of all tetrapod classes, with a similarity between phylogenies of hosts and viruses observed. We characterized bottlenose dolphin adenovirus 2 (BdAdV-2) found in a bottlenose dolphin ( Tursiops truncatus) with enteritis. Virions were seen by negative staining electron microscopy of feces. Initial sequences obtained using conserved PCR primers were expanded using primer walking techniques, and the complete coding sequence was obtained. Phylogenetic analyses were consistent with coevolution of this virus and its bottlenose dolphin host, placing BdAdV-2 into a monophyletic group with other mastadenoviruses of Cetartiodactyla. When considering the low guanine/cytosine (G/C) content of BdAdV-2 with the phylogenetic data, this virus may represent a host-jumping event from another member of Cetartiodactyla. Analysis of partial polymerase indicated that bottlenose dolphin adenovirus 1, previously identified in Spain, and BdAdV-2 are sister taxa with harbor porpoise adenovirus 1, forming a cetacean clade. Bottlenose dolphin adenovirus 2 includes a highly divergent fiber gene. Two genes homologous to the dUTPase superfamily are also present which could play a role in enabling viral replication in nondividing cells. We used sequence data to develop a probe hybridization quantitative PCR assay specific to BdAdV-2 with a limit of detection of 10 copies.
Collapse
|
10
|
Malmberg M, Rubio-Guerri C, Hayer J, García-Párraga D, Nieto-Pelegrín E, Melero M, Álvaro T, Valls M, Sánchez-Vizcaíno JM, Belák S, Granberg F. Phylogenomic analysis of the complete sequence of a gastroenteritis-associated cetacean adenovirus (bottlenose dolphin adenovirus 1) reveals a high degree of genetic divergence. INFECTION GENETICS AND EVOLUTION 2017; 53:47-55. [PMID: 28506838 DOI: 10.1016/j.meegid.2017.05.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 05/09/2017] [Accepted: 05/11/2017] [Indexed: 10/19/2022]
Abstract
Adenoviruses are common pathogens in vertebrates, infecting a wide range of hosts, but only having rarely been detected and correlated with disease in cetaceans. This article describes the first complete genomic sequence of a cetacean adenovirus, bottlenose dolphin adenovirus 1 (BdAdV-1), detected in captive bottlenose dolphin population (Tursiops truncatus) suffering from self-limiting gastroenteritis. The complete genome sequence of BdAdV-1 was recovered from data generated by high-throughput sequencing and validated by Sanger sequencing. The genome is 34,080bp long and has 220 nucleotides long inverted terminal repeats. A total of 29 coding sequences were identified, 26 of which were functionally annotated. Among the unusual features of this genome is a remarkably long 4380bp E3 ORF1, that displays no sequence homology with the corresponding E3 regions of other adenoviruses. In addition, the fiber protein only has 26% identity with fiber proteins described in other adenoviruses. Three hypothetical proteins were predicted. The phylogenetic analysis indicates that the closest known relative to BdAdV-1 is an adenovirus detected in bottlenose dolphin (KR024710), with an amino acid sequence identity between 36 and 79% depending on the protein. Based on the phylogenic analysis, the BdAdV-1 appears to have co-evolved with its host. The results indicate that BdAdV-1 belongs to the Mastadenovirus genus of the Adenoviridae family, however, it is clearly different from other adenoviruses, especially in the 3'-end of the viral genome. The high degree of sequence divergence suggests that BdAdV-1 should be considered as a novel species in the Mastadenovirus genus. The study also demonstrates the usefulness of high-throughput sequencing to obtain full-length genomes of genetically divergent viruses.
Collapse
Affiliation(s)
- Maja Malmberg
- Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07 Uppsala, Sweden; SLU Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Box 7023, 750 07 Uppsala, Sweden; World Organisation for Animal Health (OIE) Collaborating Centre for the Biotechnology-based Diagnosis of Infectious Diseases in Veterinary Medicine, Box 7028, 750 07 Uppsala, Sweden.
| | - Consuelo Rubio-Guerri
- VISAVET Center and Animal Health Department, Veterinary School, Complutense University of Madrid, Av Puerta del Hierro s/n, 28040 Madrid, Spain; Fundación Oceanografic, Ciudad de las Artes y las Ciencias, Primo Yúfera 1B, 46013, Valencia, Spain.
| | - Juliette Hayer
- SLU Global Bioinformatics Centre, Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, Box 7023, 750 07 Uppsala, Sweden
| | - Daniel García-Párraga
- Fundación Oceanografic, Ciudad de las Artes y las Ciencias, Primo Yúfera 1B, 46013, Valencia, Spain; Veterinary Services, Avanqua Oceanogràfic-Ágora, C/Eduardo Primo Yúfera 1B, 46013, Valencia, Spain.
| | - Elvira Nieto-Pelegrín
- VISAVET Center and Animal Health Department, Veterinary School, Complutense University of Madrid, Av Puerta del Hierro s/n, 28040 Madrid, Spain
| | - Mar Melero
- VISAVET Center and Animal Health Department, Veterinary School, Complutense University of Madrid, Av Puerta del Hierro s/n, 28040 Madrid, Spain.
| | - Teresa Álvaro
- Veterinary Services, Avanqua Oceanogràfic-Ágora, C/Eduardo Primo Yúfera 1B, 46013, Valencia, Spain.
| | - Mónica Valls
- Veterinary Services, Avanqua Oceanogràfic-Ágora, C/Eduardo Primo Yúfera 1B, 46013, Valencia, Spain.
| | - Jose Manuel Sánchez-Vizcaíno
- VISAVET Center and Animal Health Department, Veterinary School, Complutense University of Madrid, Av Puerta del Hierro s/n, 28040 Madrid, Spain.
| | - Sándor Belák
- Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07 Uppsala, Sweden; World Organisation for Animal Health (OIE) Collaborating Centre for the Biotechnology-based Diagnosis of Infectious Diseases in Veterinary Medicine, Box 7028, 750 07 Uppsala, Sweden.
| | - Fredrik Granberg
- Section of Virology, Department of Biomedical Sciences and Veterinary Public Health, Swedish University of Agricultural Sciences, Box 7028, 750 07 Uppsala, Sweden; World Organisation for Animal Health (OIE) Collaborating Centre for the Biotechnology-based Diagnosis of Infectious Diseases in Veterinary Medicine, Box 7028, 750 07 Uppsala, Sweden.
| |
Collapse
|