• Reference Citation Analysis
  • v
  • v
  • Find an Article
Find an Article PDF (4630709)   Today's Articles (1293)   Subscriber (49830)
For: do Amaral MN, Arge LWP, Benitez LC, Danielowski R, Silveira SFDS, Farias DDR, de Oliveira AC, da Maia LC, Braga EJB. Comparative transcriptomics of rice plants under cold, iron, and salt stresses. Funct Integr Genomics 2016;16:567-79. [PMID: 27468828 DOI: 10.1007/s10142-016-0507-y] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2016] [Revised: 07/12/2016] [Accepted: 07/18/2016] [Indexed: 10/21/2022]
Number Cited by Other Article(s)
1
Mansoor S, Hamid S, Tuan TT, Park JE, Chung YS. Advance computational tools for multiomics data learning. Biotechnol Adv 2024;77:108447. [PMID: 39251098 DOI: 10.1016/j.biotechadv.2024.108447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 09/01/2024] [Accepted: 09/05/2024] [Indexed: 09/11/2024]
2
Aslam N, Li Q, Bashir S, Yuan L, Qiao L, Li W. Integrated Review of Transcriptomic and Proteomic Studies to Understand Molecular Mechanisms of Rice's Response to Environmental Stresses. BIOLOGY 2024;13:659. [PMID: 39336087 DOI: 10.3390/biology13090659] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2024] [Revised: 08/13/2024] [Accepted: 08/22/2024] [Indexed: 09/30/2024]
3
Fendiyanto MH, Anshori MF, Pratami MP, Wasonga DO, Seleiman MF. Metabolite comparative variation related lipid metabolisms among fruit, leaf, and stem of Jatropha curcas. Heliyon 2024;10:e35861. [PMID: 39170246 PMCID: PMC11337045 DOI: 10.1016/j.heliyon.2024.e35861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 07/23/2024] [Accepted: 08/05/2024] [Indexed: 08/23/2024]  Open
4
Miao S, Lu J, Zhang G, Jiang J, Li P, Qian Y, Wang W, Xu J, Zhang F, Zhao X. Candidate Genes and Favorable Haplotypes Associated with Iron Toxicity Tolerance in Rice. Int J Mol Sci 2024;25:6970. [PMID: 39000075 PMCID: PMC11241266 DOI: 10.3390/ijms25136970] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 06/15/2024] [Accepted: 06/21/2024] [Indexed: 07/16/2024]  Open
5
Shekhawat PK, Sardar S, Yadav B, Salvi P, Soni P, Ram H. Meta-analysis of transcriptomics studies identifies novel attributes and set of genes involved in iron homeostasis in rice. Funct Integr Genomics 2023;23:336. [PMID: 37968542 DOI: 10.1007/s10142-023-01265-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Revised: 11/02/2023] [Accepted: 11/06/2023] [Indexed: 11/17/2023]
6
Han Y, Yang J, Wu H, Liu F, Qin B, Li R. Improving Rice Leaf Shape Using CRISPR/Cas9-Mediated Genome Editing of SRL1 and Characterizing Its Regulatory Network Involved in Leaf Rolling through Transcriptome Analysis. Int J Mol Sci 2023;24:11087. [PMID: 37446265 DOI: 10.3390/ijms241311087] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 06/29/2023] [Accepted: 07/03/2023] [Indexed: 07/15/2023]  Open
7
Niu Y, Fan S, Cheng B, Li H, Wu J, Zhao H, Huang Z, Yan F, Qi B, Zhang L, Zhang G. Comparative transcriptomics and co-expression networks reveal cultivar-specific molecular signatures associated with reproductive-stage cold stress in rice. PLANT CELL REPORTS 2023;42:707-722. [PMID: 36723676 DOI: 10.1007/s00299-023-02984-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 01/16/2023] [Indexed: 06/18/2023]
8
Ren X, Fan J, Li X, Shan Y, Wang L, Ma L, Li Y, Li X. Application of RNA sequencing to understand the response of rice seedlings to salt-alkali stress. BMC Genomics 2023;24:21. [PMID: 36641451 PMCID: PMC9840837 DOI: 10.1186/s12864-023-09121-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 01/06/2023] [Indexed: 01/15/2023]  Open
9
Jian G, Mo Y, Hu Y, Huang Y, Ren L, Zhang Y, Hu H, Zhou S, Liu G, Guo J, Ling Y. Variety-Specific Transcriptional and Alternative Splicing Regulations Modulate Salt Tolerance in Rice from Early Stage of Stress. RICE (NEW YORK, N.Y.) 2022;15:56. [PMID: 36326968 PMCID: PMC9633917 DOI: 10.1186/s12284-022-00599-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Accepted: 10/11/2022] [Indexed: 06/16/2023]
10
Czajka KM, Nkongolo K. Transcriptome analysis of trembling aspen (Populus tremuloides) under nickel stress. PLoS One 2022;17:e0274740. [PMID: 36227867 PMCID: PMC9560071 DOI: 10.1371/journal.pone.0274740] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 09/02/2022] [Indexed: 11/07/2022]  Open
11
Han F, Sun M, He W, Guo S, Feng J, Wang H, Yang Q, Pan H, Lou Y, Zhuge Y. Transcriptome Analysis Reveals Molecular Mechanisms under Salt Stress in Leaves of Foxtail Millet (Setaria italica L.). PLANTS (BASEL, SWITZERLAND) 2022;11:1864. [PMID: 35890498 PMCID: PMC9323065 DOI: 10.3390/plants11141864] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Revised: 07/05/2022] [Accepted: 07/13/2022] [Indexed: 06/15/2023]
12
Hua YP, Wang Y, Zhou T, Huang JY, Yue CP. Combined morpho-physiological, ionomic and transcriptomic analyses reveal adaptive responses of allohexaploid wheat (Triticum aestivum L.) to iron deficiency. BMC PLANT BIOLOGY 2022;22:234. [PMID: 35534803 PMCID: PMC9088122 DOI: 10.1186/s12870-022-03627-4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 05/03/2022] [Indexed: 06/14/2023]
13
Yuan L, Zhang L, Wei X, Wang R, Li N, Chen G, Fan F, Huang S, Li J, Li S. Quantitative Trait Locus Mapping of Salt Tolerance in Wild Rice Oryza longistaminata. Int J Mol Sci 2022;23:ijms23042379. [PMID: 35216499 PMCID: PMC8878134 DOI: 10.3390/ijms23042379] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2022] [Revised: 02/17/2022] [Accepted: 02/18/2022] [Indexed: 11/16/2022]  Open
14
Guo X, Wang Q, Liu Y, Zhang X, Zhang L, Fan S. Screening of Salt Stress Responsive Genes in Brachypodium distachyon (L.) Beauv. by Transcriptome Analysis. PLANTS (BASEL, SWITZERLAND) 2020;9:E1522. [PMID: 33182395 PMCID: PMC7697870 DOI: 10.3390/plants9111522] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 10/31/2020] [Accepted: 11/06/2020] [Indexed: 12/11/2022]
15
Arif Y, Singh P, Siddiqui H, Bajguz A, Hayat S. Salinity induced physiological and biochemical changes in plants: An omic approach towards salt stress tolerance. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020;156:64-77. [PMID: 32906023 DOI: 10.1016/j.plaphy.2020.08.042] [Citation(s) in RCA: 251] [Impact Index Per Article: 62.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2020] [Revised: 07/28/2020] [Accepted: 08/23/2020] [Indexed: 05/18/2023]
16
Zhang L, Chen L, Lu F, Liu Z, Lan S, Han G. Differentially expressed genes related to oxidoreductase activity and glutathione metabolism underlying the adaptation of Phragmites australis from the salt marsh in the Yellow River Delta, China. PeerJ 2020;8:e10024. [PMID: 33072439 PMCID: PMC7537617 DOI: 10.7717/peerj.10024] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 09/02/2020] [Indexed: 12/11/2022]  Open
17
Dey S, Regon P, Kar S, Panda SK. Chelators of iron and their role in plant's iron management. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2020;26:1541-1549. [PMID: 32801485 PMCID: PMC7415063 DOI: 10.1007/s12298-020-00841-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2019] [Revised: 05/27/2020] [Accepted: 06/20/2020] [Indexed: 06/11/2023]
18
do Amaral MN, Arge LWP, Auler PA, Rossatto T, Milech C, Magalhães AMD, Braga EJB. Long-term transcriptional memory in rice plants submitted to salt shock. PLANTA 2020;251:111. [PMID: 32474838 DOI: 10.1007/s00425-020-03397-z] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Accepted: 04/29/2020] [Indexed: 06/11/2023]
19
Ambrosino L, Colantuono C, Diretto G, Fiore A, Chiusano ML. Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PLANTS 2020;9:plants9050591. [PMID: 32384671 PMCID: PMC7285221 DOI: 10.3390/plants9050591] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Revised: 04/24/2020] [Accepted: 04/29/2020] [Indexed: 12/13/2022]
20
Han B, Ma X, Cui D, Wang Y, Geng L, Cao G, Zhang H, Han L. Comprehensive Evaluation and Analysis of the Mechanism of Cold Tolerance Based on the Transcriptome of Weedy Rice Seedlings. RICE (NEW YORK, N.Y.) 2020;13:12. [PMID: 32056019 PMCID: PMC7018935 DOI: 10.1186/s12284-019-0363-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/18/2019] [Accepted: 12/20/2019] [Indexed: 06/10/2023]
21
Complex relationship between DNA methylation and gene expression due to Lr28 in wheat-leaf rust pathosystem. Mol Biol Rep 2019;47:1339-1360. [DOI: 10.1007/s11033-019-05236-1] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Revised: 11/08/2019] [Accepted: 12/07/2019] [Indexed: 11/26/2022]
22
Turhadi T, Hamim H, Ghulamahdi M, Miftahudin M. Iron toxicity-induced physiological and metabolite profile variations among tolerant and sensitive rice varieties. PLANT SIGNALING & BEHAVIOR 2019;14:1682829. [PMID: 31657655 PMCID: PMC6866706 DOI: 10.1080/15592324.2019.1682829] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Revised: 10/12/2019] [Accepted: 10/14/2019] [Indexed: 05/28/2023]
23
Zheng D, Wang L, Chen L, Pan X, Lin K, Fang Y, Wang XE, Zhang W. Salt-Responsive Genes are Differentially Regulated at the Chromatin Levels Between Seedlings and Roots in Rice. PLANT & CELL PHYSIOLOGY 2019;60:1790-1803. [PMID: 31111914 DOI: 10.1093/pcp/pcz095] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Accepted: 05/06/2019] [Indexed: 06/09/2023]
24
Spies D, Renz PF, Beyer TA, Ciaudo C. Comparative analysis of differential gene expression tools for RNA sequencing time course data. Brief Bioinform 2019;20:288-298. [PMID: 29028903 PMCID: PMC6357553 DOI: 10.1093/bib/bbx115] [Citation(s) in RCA: 66] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2017] [Indexed: 02/05/2023]  Open
25
Husin NA, Rahman S, Karunakaran R, Bhore SJ. A review on the nutritional, medicinal, molecular and genome attributes of Durian (Durio zibethinus L.), the King of fruits in Malaysia. Bioinformation 2018;14:265-270. [PMID: 30237671 PMCID: PMC6137565 DOI: 10.6026/97320630014265] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Revised: 06/09/2018] [Accepted: 06/09/2018] [Indexed: 02/02/2023]  Open
26
Buti M, Pasquariello M, Ronga D, Milc JA, Pecchioni N, Ho VT, Pucciariello C, Perata P, Francia E. Transcriptome profiling of short-term response to chilling stress in tolerant and sensitive Oryza sativa ssp. Japonica seedlings. Funct Integr Genomics 2018;18:627-644. [PMID: 29876699 DOI: 10.1007/s10142-018-0615-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 03/07/2018] [Accepted: 05/23/2018] [Indexed: 12/26/2022]
27
Muhammad I, Jing XQ, Shalmani A, Ali M, Yi S, Gan PF, Li WQ, Liu WT, Chen KM. Comparative in Silico Analysis of Ferric Reduction Oxidase (FRO) Genes Expression Patterns in Response to Abiotic Stresses, Metal and Hormone Applications. Molecules 2018;23:molecules23051163. [PMID: 29757203 PMCID: PMC6099960 DOI: 10.3390/molecules23051163] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 05/04/2018] [Accepted: 05/09/2018] [Indexed: 02/01/2023]  Open
28
Sperotto RA, de Araújo Junior AT, Adamski JM, Cargnelutti D, Ricachenevsky FK, de Oliveira BHN, da Cruz RP, Dos Santos RP, da Silva LP, Fett JP. Deep RNAseq indicates protective mechanisms of cold-tolerant indica rice plants during early vegetative stage. PLANT CELL REPORTS 2018;37:347-375. [PMID: 29151156 DOI: 10.1007/s00299-017-2234-9] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2017] [Accepted: 11/08/2017] [Indexed: 05/13/2023]
29
Xie R, Pan X, Zhang J, Ma Y, He S, Zheng Y, Ma Y. Effect of salt-stress on gene expression in citrus roots revealed by RNA-seq. Funct Integr Genomics 2017;18:155-173. [DOI: 10.1007/s10142-017-0582-8] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2017] [Revised: 11/03/2017] [Accepted: 12/11/2017] [Indexed: 11/29/2022]
30
Wu Q, Bai X, Zhao W, Xiang D, Wan Y, Yan J, Zou L, Zhao G. De Novo Assembly and Analysis of Tartary Buckwheat (Fagopyrum tataricum Garetn.) Transcriptome Discloses Key Regulators Involved in Salt-Stress Response. Genes (Basel) 2017;8:genes8100255. [PMID: 28972562 PMCID: PMC5664105 DOI: 10.3390/genes8100255] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Revised: 09/15/2017] [Accepted: 09/15/2017] [Indexed: 11/24/2022]  Open
31
Salinity Response in Chloroplasts: Insights from Gene Characterization. Int J Mol Sci 2017;18:ijms18051011. [PMID: 28481319 PMCID: PMC5454924 DOI: 10.3390/ijms18051011] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Revised: 04/30/2017] [Accepted: 05/04/2017] [Indexed: 11/17/2022]  Open
32
Transcription dynamics of Saltol QTL localized genes encoding transcription factors, reveals their differential regulation in contrasting genotypes of rice. Funct Integr Genomics 2016;17:69-83. [PMID: 27848097 DOI: 10.1007/s10142-016-0529-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2016] [Revised: 10/02/2016] [Accepted: 10/10/2016] [Indexed: 10/20/2022]
33
Exploring drought stress-regulated genes in senna (Cassia angustifolia Vahl.): a transcriptomic approach. Funct Integr Genomics 2016;17:1-25. [PMID: 27709374 DOI: 10.1007/s10142-016-0523-y] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Revised: 09/02/2016] [Accepted: 09/05/2016] [Indexed: 01/08/2023]
PrevPage 1 of 1 1Next
© 2004-2024 Baishideng Publishing Group Inc. All rights reserved. 7041 Koll Center Parkway, Suite 160, Pleasanton, CA 94566, USA