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Cheng J, Sun K. Heart Sound Classification Network Based on Convolution and Transformer. SENSORS (BASEL, SWITZERLAND) 2023; 23:8168. [PMID: 37836998 PMCID: PMC10575162 DOI: 10.3390/s23198168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2023] [Revised: 08/31/2023] [Accepted: 09/19/2023] [Indexed: 10/15/2023]
Abstract
Electronic auscultation is vital for doctors to detect symptoms and signs of cardiovascular diseases (CVDs), significantly impacting human health. Although progress has been made in heart sound classification, most existing methods require precise segmentation and feature extraction of heart sound signals before classification. To address this, we introduce an innovative approach for heart sound classification. Our method, named Convolution and Transformer Encoder Neural Network (CTENN), simplifies preprocessing, automatically extracting features using a combination of a one-dimensional convolution (1D-Conv) module and a Transformer encoder. Experimental results showcase the superiority of our proposed method in both binary and multi-class tasks, achieving remarkable accuracies of 96.4%, 99.7%, and 95.7% across three distinct datasets compared with that of similar approaches. This advancement holds promise for enhancing CVD diagnosis and treatment.
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Affiliation(s)
- Jiawen Cheng
- College of Electronic and Optical Engineering & College of Flexible Electronics (Future Technology), Nanjing University of Posts and Telecommunications, Nanjing 210023, China;
| | - Kexue Sun
- College of Electronic and Optical Engineering & College of Flexible Electronics (Future Technology), Nanjing University of Posts and Telecommunications, Nanjing 210023, China;
- Nation-Local Joint Project Engineering Laboratory of RF Integration & Micropackage, Nanjing 210023, China
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Ma K, Lu J, Lu B. Parameter-Efficient Densely Connected Dual Attention Network for Phonocardiogram Classification. IEEE J Biomed Health Inform 2023; 27:4240-4249. [PMID: 37318972 DOI: 10.1109/jbhi.2023.3286585] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Cardiac auscultation, exhibited by phonocardiogram (PCG), is a non-invasive and low-cost diagnostic method for cardiovascular diseases (CVDs). However, deploying it in practice is quite challenging, due to the inherent murmurs and a limited number of supervised samples in heart sound data. To solve these problems, not only heart sound analysis based on handcrafted features, but also computer-aided heart sound analysis based on deep learning have been extensively studied in recent years. Though with elaborate design, most of these methods still use additional pre-processing to improve classification performance, which heavily relies on time-consuming experienced engineering. In this article, we propose a parameter-efficient densely connected dual attention network (DDA) for heart sound classification. It combines two advantages simultaneously of the purely end-to-end architecture and enriched contextual representations of the self-attention mechanism. Specifically, the densely connected structure can automatically extract the information flow of heart sound features hierarchically. Alongside, improving contextual modeling capabilities, the dual attention mechanism adaptively aggregates local features with global dependencies via a self-attention mechanism, which captures the semantic interdependencies across position and channel axes respectively. Extensive experiments across stratified 10-fold cross-validation strongly evidence that our proposed DDA model surpasses current 1D deep models on the challenging Cinc2016 benchmark with significant computational efficiency.
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Torre-Cruz J, Canadas-Quesada F, Ruiz-Reyes N, Vera-Candeas P, Garcia-Galan S, Carabias-Orti J, Ranilla J. Detection of valvular heart diseases combining orthogonal non-negative matrix factorization and convolutional neural networks in PCG signals. J Biomed Inform 2023; 145:104475. [PMID: 37595770 DOI: 10.1016/j.jbi.2023.104475] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 07/25/2023] [Accepted: 08/11/2023] [Indexed: 08/20/2023]
Abstract
BACKGROUND AND OBJECTIVE Valvular heart disease (VHD) is associated with elevated mortality rates. Although transthoracic echocardiography (TTE) is the gold standard detection tool, phonocardiography (PCG) could be an alternative as it is a cost-effective and noninvasive method for cardiac auscultation. Many researchers have dedicated their efforts to improving the decision-making process and developing robust and precise approaches to assist physicians in providing reliable diagnoses of VHD. METHODS This research proposes a novel approach for the detection of anomalous valvular heart sounds from PCG signals. The proposed approach combines orthogonal non-negative matrix factorization (ONMF) and convolutional neural network (CNN) architectures in a three-stage cascade. The aim of the proposal is to improve the learning process by identifying the optimal ONMF temporal or spectral patterns for accurate detection. In the first stage, the time-frequency representation of the input PCG signal is computed. Next, band-pass filtering is performed to locate the spectral range that is most relevant for the presence of such cardiac abnormalities. In the second stage, the temporal and spectral cardiac structures are extracted using the ONMF approach. These structures are utilized in the third stage and fed into the CNN architecture to detect abnormal heart sounds. RESULTS Several state-of-the-art CNN architectures, such as LeNet5, AlexNet, ResNet50, VGG16 and GoogLeNet, have been evaluated to determine the effectiveness of using ONMF temporal features for VHD detection. The results reveal that the integration of ONMF temporal features with a CNN classifier significantly improve VHD detection. Specifically, the proposed approach achieves an accuracy improvement of approximately 45% when ONMF spectral features are used and 35% when time-frequency features from the short-time Fourier transform (STFT) spectrogram are used. Additionally, feeding ONMF temporal features into low-complexity CNN architectures yields competitive results comparable to those obtained with complex architectures. CONCLUSIONS The temporal structure factorized by ONMF plays a critical role in distinguishing between normal heart sounds and abnormal heart sounds since the repeatability of normal heart cycles is disrupted by the presence of cardiac abnormalities. Consequently, the results highlight the importance of appropriate input data representation in the learning process of CNN models in the biomedical field of valvular heart sound detection.
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Affiliation(s)
- J Torre-Cruz
- Department of Telecommunication Engineering. University of Jaen, Campus Cientifico-Tecnologico de Linares, Avda. de la Universidad, s/n, Linares (Jaen), 23700, Spain.
| | - F Canadas-Quesada
- Department of Telecommunication Engineering. University of Jaen, Campus Cientifico-Tecnologico de Linares, Avda. de la Universidad, s/n, Linares (Jaen), 23700, Spain
| | - N Ruiz-Reyes
- Department of Telecommunication Engineering. University of Jaen, Campus Cientifico-Tecnologico de Linares, Avda. de la Universidad, s/n, Linares (Jaen), 23700, Spain
| | - P Vera-Candeas
- Department of Telecommunication Engineering. University of Jaen, Campus Cientifico-Tecnologico de Linares, Avda. de la Universidad, s/n, Linares (Jaen), 23700, Spain
| | - S Garcia-Galan
- Department of Telecommunication Engineering. University of Jaen, Campus Cientifico-Tecnologico de Linares, Avda. de la Universidad, s/n, Linares (Jaen), 23700, Spain
| | - J Carabias-Orti
- Department of Telecommunication Engineering. University of Jaen, Campus Cientifico-Tecnologico de Linares, Avda. de la Universidad, s/n, Linares (Jaen), 23700, Spain
| | - J Ranilla
- Department of Computer Science, University of Oviedo, Campus de Gijón s/n, Gijon (Asturias), 33203, Spain
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Azmeen A, Vakilzadian H, Haider H, Mathers DH, Zimmerman R, Bedi S, O'Leary EL. Heart sounds: Past, present, and future from a technological and clinical perspective - a systematic review. Proc Inst Mech Eng H 2023:9544119231172858. [PMID: 37139865 DOI: 10.1177/09544119231172858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
The high prevalence of cardiac diseases around the world has created a need for quick, easy and cost effective approaches to diagnose heart disease. The auscultation and interpretation of heart sounds using the stethoscope is relatively inexpensive, requires minimal to advanced training, and is widely available and easily carried by healthcare providers working in urban environments or medically underserved rural areas. Since René-Théophile-Hyacinthe Laennec's simple, monoaural design, the capabilities of modern-day, commercially available stethoscopes and stethoscope systems have radically advanced with the integration of electronic hardware and software tools, however these systems are largely confined to the metropolitan medical centers. The purpose of this paper is to review the history of stethoscopes, compare commercially available stethoscope products and analytical software, and discuss future directions. Our review includes a description of heart sounds and how modern software enables the measurement and analysis of time intervals, teaching auscultation, remote cardiac examination (telemedicine) and, more recently, spectrographic evaluation and electronic storage. The basic methodologies behind modern software algorithms and techniques for heart sound preprocessing, segmentation and classification are described to provide awareness.
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Affiliation(s)
- Ayesha Azmeen
- University of Nebraska Medical Center, Omaha, NE, USA
| | | | - Hani Haider
- University of Nebraska Medical Center, Omaha, NE, USA
| | | | | | - Shine Bedi
- Univeristy of Nebraska-Lincoln, Lincoln, NE, USA
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Rath A, Mishra D, Panda G, Pal M. Development and assessment of machine learning based heart disease detection using imbalanced heart sound signal. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103730] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Automatic Classification of Normal–Abnormal Heart Sounds Using Convolution Neural Network and Long-Short Term Memory. ELECTRONICS 2022. [DOI: 10.3390/electronics11081246] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
The phonocardiogram (PCG) is an important analysis method for the diagnosis of cardiovascular disease, which is usually performed by experienced medical experts. Due to the high ratio of patients to doctors, there is a pressing need for a real-time automated phonocardiogram classification system for the diagnosis of cardiovascular disease. This paper proposes a deep neural-network structure based on a one-dimensional convolutional neural network (1D-CNN) and a long short-term memory network (LSTM), which can directly classify unsegmented PCG to identify abnormal signal. The PCG data were filtered and put into the model for analysis. A total of 3099 pieces of heart-sound recordings were used, while another 100 patients’ heart-sound data collected by our group and diagnosed by doctors were used to test and verify the model. Results show that the CNN-LSTM model provided a good overall balanced accuracy of 0.86 ± 0.01 with a sensitivity of 0.87 ± 0.02, and specificity of 0.89 ± 0.02. The F1-score was 0.91 ± 0.01, and the receiver-operating characteristic (ROC) plot produced an area under the curve (AUC) value of 0.92 ± 0.01. The sensitivity, specificity and accuracy of the 100 patients’ data were 0.83 ± 0.02, 0.80 ± 0.02 and 0.85 ± 0.03, respectively. The proposed model does not require feature engineering and heart-sound segmentation, which possesses reliable performance in classification of abnormal PCG; and is fast and suitable for real-time diagnosis application.
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Chen Y, Sun Y, Lv J, Jia B, Huang X. End-to-end heart sound segmentation using deep convolutional recurrent network. COMPLEX INTELL SYST 2021. [DOI: 10.1007/s40747-021-00325-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
AbstractHeart sound segmentation (HSS) aims to detect the four stages (first sound, systole, second heart sound and diastole) from a heart cycle in a phonocardiogram (PCG), which is an essential step in automatic auscultation analysis. Traditional HSS methods need to manually extract the features before dealing with HSS tasks. These artificial features highly rely on extraction algorithms, which often result in poor performance due to the different operating environments. In addition, the high-dimension and frequency characteristics of audio also challenge the traditional methods in effectively addressing HSS tasks. This paper presents a novel end-to-end method based on convolutional long short-term memory (CLSTM), which directly uses audio recording as input to address HSS tasks. Particularly, the convolutional layers are designed to extract the meaningful features and perform the downsampling, and the LSTM layers are developed to conduct the sequence recognition. Both components collectively improve the robustness and adaptability in processing the HSS tasks. Furthermore, the proposed CLSTM algorithm is easily extended to other complex heart sound annotation tasks, as it does not need to extract the characteristics of corresponding tasks in advance. In addition, the proposed algorithm can also be regarded as a powerful feature extraction tool, which can be integrated into the existing models for HSS. Experimental results on real-world PCG datasets, through comparisons to peer competitors, demonstrate the outstanding performance of the proposed algorithm.
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Baghel N, Dutta MK, Burget R. Automatic diagnosis of multiple cardiac diseases from PCG signals using convolutional neural network. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2020; 197:105750. [PMID: 32932128 DOI: 10.1016/j.cmpb.2020.105750] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2020] [Accepted: 09/04/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND AND OBJECTIVES Cardiovascular diseases are critical diseases and need to be diagnosed as early as possible. There is a lack of medical professionals in remote areas to diagnose these diseases. Artificial intelligence-based automatic diagnostic tools can help to diagnose cardiac diseases. This work presents an automatic classification method using machine learning to diagnose multiple cardiac diseases from phonocardiogram signals. METHODS The proposed system involves a convolutional neural network (CNN) model because of its high accuracy and robustness to automatically diagnose the cardiac disorders from the heart sounds. To improve the accuracy in a noisy environment and make the method robust, the proposed method has used data augmentation techniques for training and multi-classification of multiple cardiac diseases. RESULTS The model has been validated both heart sound data and augmented data using n-fold cross-validation. Results of all fold have been shown reported in this work. The model has achieved accuracy on the test set up to 98.60% to diagnose multiple cardiac diseases. CONCLUSIONS The proposed model can be ported to any computing devices like computers, single board computing processors, android handheld devices etc. To make a stand-alone diagnostic tool that may be of help in remote primary health care centres. The proposed method is non-invasive, efficient, robust, and has low time complexity making it suitable for real-time applications.
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Affiliation(s)
- Neeraj Baghel
- Centre for Advanced Studies, Dr. A.P.J. Abdul Kalam Technical University, India
| | - Malay Kishore Dutta
- Centre for Advanced Studies, Dr. A.P.J. Abdul Kalam Technical University, India.
| | - Radim Burget
- Brno University of Technology. Brno, Czech Republic
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de Campos Souza PV, Lughofer E. Identification of Heart Sounds with an Interpretable Evolving Fuzzy Neural Network. SENSORS (BASEL, SWITZERLAND) 2020; 20:E6477. [PMID: 33198426 PMCID: PMC7698187 DOI: 10.3390/s20226477] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Revised: 11/09/2020] [Accepted: 11/10/2020] [Indexed: 11/16/2022]
Abstract
Heart problems are responsible for the majority of deaths worldwide. The use of intelligent techniques to assist in the identification of existing patterns in these diseases can facilitate treatments and decision making in the field of medicine. This work aims to extract knowledge from a dataset based on heart noise behaviors in order to determine whether heart murmur predilection exists or not in the analyzed patients. A heart murmur can be pathological due to defects in the heart, so the use of an evolving hybrid technique can assist in detecting this comorbidity team, and at the same time, extract knowledge through fuzzy linguistic rules, facilitating the understanding of the nature of the evaluated data. Heart disease detection tests were performed to compare the proposed hybrid model's performance with state of the art for the subject. The results obtained (90.75% accuracy) prove that in addition to great assertiveness in detecting heart murmurs, the evolving hybrid model could be concomitant with the extraction of knowledge from data submitted to an intelligent approach.
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10
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Debbal SMEA. Analysis of the four heart sounds statistical study and spectro-temporal characteristics. J Med Eng Technol 2020; 44:396-410. [PMID: 32840440 DOI: 10.1080/03091902.2020.1799095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Heart auscultation has been recognised for a long time as an important tool for the diagnosis of heart disease; it is the most common and widely recommended method to screen for structural abnormalities of the cardiovascular system. Detecting relevant characteristics and forming a diagnosis based on the sounds heard through a stethoscope, however, is a skill that can take years to be acquired and refine. The efficiency and accuracy of diagnosis based on heart sound auscultation can be improved considerably by using digital signal processing techniques to analyse phonocardiographic (PCG) signals. The study of the functioning of the heart is very important for the diagnosis of different cardiac pathologies. The phonocardiogram signal (PCG) is the signal generated after conversion of the sound noises coming from the heart into an electrical signal, it groups together a set of four cardiac noises (S1, S2, S3, S4) which are in direct correlation with cardiac activity. The short-term Fourier Transform (STFT) is an analytical technique that describes the evolution of the time and frequency behaviour of these four heart sounds. A statistical study has been carried out in this direction in order to better highlight the characteristics of the PCG signal. A fairly high number of cycles (twenty) was used to further refine the expected results. The objective of this paper is to use a statistical analysis based on the results obtained by the use of The STFT technic this in order to find statistical parameters (mean, standard deviation, etc.) which can give us a clear vision of the electrophysiological behaviour of the phonocardiogram signal. This aspect has not been done so far and which however can give appreciable practical results.
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Affiliation(s)
- Sidi Mohammed El Amine Debbal
- Biomedical Engineering Department, Faculty of Technology, Tlemcen University. Biomedical Engineering Laboratory (GBM), Tlemcen, Algeria
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11
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Xiao B, Xu Y, Bi X, Zhang J, Ma X. Heart sounds classification using a novel 1-D convolutional neural network with extremely low parameter consumption. Neurocomputing 2020. [DOI: 10.1016/j.neucom.2018.09.101] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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12
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Automated detection of heart valve diseases using chirplet transform and multiclass composite classifier with PCG signals. Comput Biol Med 2020; 118:103632. [DOI: 10.1016/j.compbiomed.2020.103632] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Revised: 01/25/2020] [Accepted: 01/25/2020] [Indexed: 12/20/2022]
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Han W, Xie S, Yang Z, Zhou S, Huang H. Heart sound classification using the SNMFNet classifier. Physiol Meas 2019; 40:105003. [PMID: 31533092 DOI: 10.1088/1361-6579/ab45c8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
OBJECTIVE Heart sound classification still suffers from the challenges involved in achieving high accuracy in the case of small samples. Dimension reduction attempts to extract low-dimensional features with more discriminability from high-dimensional spaces or raw data, and is popular in learning predictive models that target small sample problems. However, it can also be harmful to classification, because any reduction has the potential to lose information containing category attributes. APPROACH For this, a novel SNMFNet classifier is designed to directly associate the dimension reduction process with the classification procedure used for promoting feature dimension reduction to follow the approach that is beneficial for classification, thus making the low-dimensional features more distinguishable and addressing the challenge facing heart sound classification in small samples. MAIN RESULTS We evaluated our method and representative methods using a public heart sound dataset. The experimental results demonstrate that our method outperforms all comparative models with an obvious improvement in small samples. Furthermore, even if used with relatively sufficient samples, our method performs at least as well as the baseline that uses the same high-dimensional features. SIGNIFICANCE The proposed SNMFNet classifier significantly to improves the small sample problem in heart sound classification.
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Affiliation(s)
- Wei Han
- School of Automation, Guangdong University of Technology, Guangzhou, People's Republic of China. Guangdong Key Laboratory of Modern Control Technology, Guangdong Institute of Intelligent Manufacturing, Guangzhou, People's Republic of China
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Sotaquirá M, Alvear D, Mondragón M. Phonocardiogram classification using deep neural networks and weighted probability comparisons. J Med Eng Technol 2019; 42:510-517. [PMID: 30773957 DOI: 10.1080/03091902.2019.1576789] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Cardiac auscultation is one of the most conventional approaches for the initial assessment of heart disease, however the technique is highly user-dependent and with low repeatability. Several computational approaches based on the analysis of the phonocardiograms (PCG) have been proposed to classify heart sounds into normal or abnormal, but most often do not achieve acceptable levels of sensitivity (Se) and specificity (Sp) or require the use of special hardware. We propose a novel approach for classification of PCG. First, the system makes use of deep neural networks for computing individual cardiac cycle probabilities, followed by classification using weighted probability comparisons. The system was tested on an extended dataset consisting of a balanced sample of 18179 normal and abnormal cycles, achieving Se and Sp values of 91.3% and 93.8% respectively. In addition, the system overcomes previous limitations since it was trained with a balanced sample; also, the decision factor used during the classification stage allows to control the trade-off between Se and Sp, making the proposed system suitable for clinical applications.
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Affiliation(s)
| | - Demián Alvear
- a Universidad de San Buenaventura , Bogotá , Colombia
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15
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Shervegar MV, Bhat GV. Heart sound classification using Gaussian mixture model. Porto Biomed J 2018; 3:e4. [PMID: 31595231 PMCID: PMC6726299 DOI: 10.1016/j.pbj.0000000000000004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2018] [Accepted: 05/04/2018] [Indexed: 11/30/2022] Open
Abstract
Background: This article represents a new method of classifying the heart sound status using the loudness features from the heart sound. Materials and methods: The method includes the following 3 main steps. First, the heart sound, which is usually found noisy, is heavily filtered by a 6th-order Chebyshev-I filter. The heart sound is then segmented using the event synchronous method to separate the sounds into the first heart sound, the systole and the second heart sound, the diastole. In the second step, the heart sound features namely maximum loudness index and minimum loudness index are obtained from the spectrogram of the sound by taking the row means. As a third step, the heart sound is classified using the Gaussian mixture model approach to categorize the sounds. Results: This method has been tested on a very large database of heart sounds consisting of over 3000 heart sounds recordings with a success rate of 97.77%. Conclusion: Only 2 features are used in this method namely, minimum loudness index and maximum loudness index. Classification of sounds using these 2 features yields high accuracy even under noisy conditions and is comparable to any state-of-the-art technique.
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Tang H, Dai Z, Jiang Y, Li T, Liu C. PCG Classification Using Multidomain Features and SVM Classifier. BIOMED RESEARCH INTERNATIONAL 2018; 2018:4205027. [PMID: 30112388 PMCID: PMC6077676 DOI: 10.1155/2018/4205027] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 06/12/2018] [Indexed: 11/26/2022]
Abstract
This paper proposes a method using multidomain features and support vector machine (SVM) for classifying normal and abnormal heart sound recordings. The database was provided by the PhysioNet/CinC Challenge 2016. A total of 515 features are extracted from nine feature domains, i.e., time interval, frequency spectrum of states, state amplitude, energy, frequency spectrum of records, cepstrum, cyclostationarity, high-order statistics, and entropy. Correlation analysis is conducted to quantify the feature discrimination abilities, and the results show that "frequency spectrum of state", "energy", and "entropy" are top domains to contribute effective features. A SVM with radial basis kernel function was trained for signal quality estimation and classification. The SVM classifier is independently trained and tested by many groups of top features. It shows the average of sensitivity, specificity, and overall score are high up to 0.88, 0.87, and 0.88, respectively, when top 400 features are used. This score is competitive to the best previous scores. The classifier has very good performance with even small number of top features for training and it has stable output regardless of randomly selected features for training. These simulations demonstrate that the proposed features and SVM classifier are jointly powerful for classifying heart sound recordings.
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Affiliation(s)
- Hong Tang
- Department of Biomedical Engineering, Dalian University of Technology, Dalian, China
| | - Ziyin Dai
- Department of Biomedical Engineering, Dalian University of Technology, Dalian, China
| | - Yuanlin Jiang
- Department of Biomedical Engineering, Dalian University of Technology, Dalian, China
| | - Ting Li
- College of Information and Communication Engineering, Dalian Minzu University, Dalian, China
| | - Chengyu Liu
- School of Instrument Science and Engineering, Southeast University, Nanjing, China
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Clifford GD, Liu C, Moody B, Millet J, Schmidt S, Li Q, Silva I, Mark RG. Recent advances in heart sound analysis. Physiol Meas 2017; 38:E10-E25. [PMID: 28696334 DOI: 10.1088/1361-6579/aa7ec8] [Citation(s) in RCA: 51] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Gari D Clifford
- Department of Biomedical Informatics, Emory University, Atlanta, GA, United States of America. Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA, United States of America
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Maknickas V, Maknickas A. Recognition of normal–abnormal phonocardiographic signals using deep convolutional neural networks and mel-frequency spectral coefficients. Physiol Meas 2017; 38:1671-1684. [DOI: 10.1088/1361-6579/aa7841] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Abdollahpur M, Ghaffari A, Ghiasi S, Mollakazemi MJ. Detection of pathological heart sounds. Physiol Meas 2017; 38:1616-1630. [PMID: 28594641 DOI: 10.1088/1361-6579/aa7840] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Heart sound analysis has been a major topic of research over the past few decades. However, the necessity for a large and reliable database has been a major concern in these studies. OBJECTIVE Noting that the current heart sound classification methods do not work properly for noisy signals, the PhysioNet/CinC Challenge 2016 aims to develop the heart sound classification algorithms by providing a global open database for challengers. This paper addresses the problem of heart sound classification methods within noisy real-world phonocardiogram recordings by implementing an innovative approach. SIGNIFICANCE After locating the fundamental heart sounds and the systolic and diastolic components, a novel method named cycle quality assessment is applied to each recording. The presented method detects those cycles which are less affected by noise and better segmented by the use of two criteria here proposed in this paper. The selected cycles are the inputs of a further feature extraction process. APPROACH Due to the variability of the heart sound signal induced by various cardiac arrhythmias, four sets of features from the time, time-frequency and perceptual domains are extracted. Before starting the main classification process, the obtained 90-dimensional feature vector is mapped to a new feature space to pre-detect normal recordings by applying a Fisher's discriminant analysis. The main classification procedure is then done based on three feed-forward neural networks and a voting system among classifiers. MAIN RESULTS The presented method is evaluated using the training and hidden test sets of the PhysioNet/CinC Challenge 2016. Also, the results are compared with the top five ranked submissions. The results indicate that the proposed method is effective in classifying heart sounds as normal versus abnormal recordings.
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Affiliation(s)
- Mostafa Abdollahpur
- CardioVascular Research Group (CVRG), Department of Mechanical Engineering at K. N., Toosi University of Technology, Tehran, Iran
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Liu C, Springer D, Li Q, Moody B, Juan RA, Chorro FJ, Castells F, Roig JM, Silva I, Johnson AE, Syed Z, Schmidt SE, Papadaniil CD, Hadjileontiadis L, Naseri H, Moukadem A, Dieterlen A, Brandt C, Tang H, Samieinasab M, Samieinasab MR, Sameni R, Mark RG, Clifford GD. An open access database for the evaluation of heart sound algorithms. Physiol Meas 2016; 37:2181-2213. [PMID: 27869105 PMCID: PMC7199391 DOI: 10.1088/0967-3334/37/12/2181] [Citation(s) in RCA: 206] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
In the past few decades, analysis of heart sound signals (i.e. the phonocardiogram or PCG), especially for automated heart sound segmentation and classification, has been widely studied and has been reported to have the potential value to detect pathology accurately in clinical applications. However, comparative analyses of algorithms in the literature have been hindered by the lack of high-quality, rigorously validated, and standardized open databases of heart sound recordings. This paper describes a public heart sound database, assembled for an international competition, the PhysioNet/Computing in Cardiology (CinC) Challenge 2016. The archive comprises nine different heart sound databases sourced from multiple research groups around the world. It includes 2435 heart sound recordings in total collected from 1297 healthy subjects and patients with a variety of conditions, including heart valve disease and coronary artery disease. The recordings were collected from a variety of clinical or nonclinical (such as in-home visits) environments and equipment. The length of recording varied from several seconds to several minutes. This article reports detailed information about the subjects/patients including demographics (number, age, gender), recordings (number, location, state and time length), associated synchronously recorded signals, sampling frequency and sensor type used. We also provide a brief summary of the commonly used heart sound segmentation and classification methods, including open source code provided concurrently for the Challenge. A description of the PhysioNet/CinC Challenge 2016, including the main aims, the training and test sets, the hand corrected annotations for different heart sound states, the scoring mechanism, and associated open source code are provided. In addition, several potential benefits from the public heart sound database are discussed.
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Affiliation(s)
- Chengyu Liu
- Department of Biomedical Informatics, Emory University, USA
| | - David Springer
- Institute of Biomedical Engineering, Department of Engineering Science, University of Oxford, UK
| | - Qiao Li
- Department of Biomedical Informatics, Emory University, USA
| | - Benjamin Moody
- Institute for Medical Engineering & Science, Massachusetts Institute of Technology, USA
| | - Ricardo Abad Juan
- Department of Biomedical Engineering, Georgia Institute of Technology, USA
- ITACA Institute, Universitat Politecnica de Valencia, Spain
| | - Francisco J Chorro
- Service of Cardiology, Valencia University Clinic Hospital, INCLIVA, Spain
| | | | | | - Ikaro Silva
- Institute for Medical Engineering & Science, Massachusetts Institute of Technology, USA
| | - Alistair E.W. Johnson
- Institute for Medical Engineering & Science, Massachusetts Institute of Technology, USA
| | - Zeeshan Syed
- Department of Biomedical Engineering, University of Michigan, Ann Arbor, MI, USA
| | - Samuel E. Schmidt
- Department of Health Science and Technology, Aalborg University, Denmark
| | - Chrysa D. Papadaniil
- Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, Greece
| | | | - Hosein Naseri
- Department of Mechanical Engineering, K. N. Toosi University of Technology, Iran
| | - Ali Moukadem
- MIPS Laboratory, University of Haute Alsace, France
| | | | | | - Hong Tang
- Faculty of Electronic and Electrical Engineering, Dalian University of Technology, China
| | - Maryam Samieinasab
- School of Electrical & Computer Engineering, Shiraz University, Shiraz, Iran
| | | | - Reza Sameni
- School of Electrical & Computer Engineering, Shiraz University, Shiraz, Iran
| | - Roger G. Mark
- Institute for Medical Engineering & Science, Massachusetts Institute of Technology, USA
| | - Gari D. Clifford
- Department of Biomedical Informatics, Emory University, USA
- Department of Biomedical Engineering, Georgia Institute of Technology, USA
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21
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Cikajlo I, Šprager S, Erjavec T, Zazula D. Cardiac arrhythmia alarm from optical interferometric signals during resting or sleeping for early intervention. Biocybern Biomed Eng 2016. [DOI: 10.1016/j.bbe.2015.12.006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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22
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An Intelligent Phonocardiography for Automated Screening of Pediatric Heart Diseases. J Med Syst 2015; 40:16. [PMID: 26573653 DOI: 10.1007/s10916-015-0359-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2014] [Accepted: 09/30/2015] [Indexed: 10/22/2022]
Abstract
This paper presents a robust device for automated screening of pediatric heart diseases based on our unique processing method in murmur characterization; the Arash-Band method. The present study modifies the Arash-Band method and employs output of the modified method in conjunction with the two other original techniques to extract indicative feature vectors for the screening. The extracted feature vectors are classified by using the support vector machine method. Results show that the proposed modifications significantly enhances performance of the Arash-Band in terms of the both accuracy and sensitivity as the corresponding effect sizes are sufficiently large. The proposed algorithm has been incorporated into an Android-based tablet to constitute an intelligent phonocardiogram with the automatic screening capability. In order to obtain confidence interval of the accuracy and sensitivity, an inferable statistical test is applied on our database containing the phonocardiogram signals recorded from 263 of the referrals to a hospital. The expected value of the accuracy/sensitivity is estimated to be 87.45 % / 87.29 % with a 95 % confidence interval of (80.19 % - 92.47 %) / (76.01 % - 95.78 %) exhibiting superior performance than a pediatric cardiologist who relies on conventional or even computer-assisted auscultation.
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23
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Leng S, Tan RS, Chai KTC, Wang C, Ghista D, Zhong L. The electronic stethoscope. Biomed Eng Online 2015; 14:66. [PMID: 26159433 PMCID: PMC4496820 DOI: 10.1186/s12938-015-0056-y] [Citation(s) in RCA: 138] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 06/11/2015] [Indexed: 11/13/2022] Open
Abstract
Most heart diseases are associated with and reflected by the sounds that the heart produces. Heart auscultation, defined as listening to the heart sound, has been a very important method for the early diagnosis of cardiac dysfunction. Traditional auscultation requires substantial clinical experience and good listening skills. The emergence of the electronic stethoscope has paved the way for a new field of computer-aided auscultation. This article provides an in-depth study of (1) the electronic stethoscope technology, and (2) the methodology for diagnosis of cardiac disorders based on computer-aided auscultation. The paper is based on a comprehensive review of (1) literature articles, (2) market (state-of-the-art) products, and (3) smartphone stethoscope apps. It covers in depth every key component of the computer-aided system with electronic stethoscope, from sensor design, front-end circuitry, denoising algorithm, heart sound segmentation, to the final machine learning techniques. Our intent is to provide an informative and illustrative presentation of the electronic stethoscope, which is valuable and beneficial to academics, researchers and engineers in the technical field, as well as to medical professionals to facilitate its use clinically. The paper provides the technological and medical basis for the development and commercialization of a real-time integrated heart sound detection, acquisition and quantification system.
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Affiliation(s)
- Shuang Leng
- National Heart Research Institute Singapore, National Heart Centre Singapore, 5 Hospital Drive, Singapore, 169609, Singapore.
| | - Ru San Tan
- National Heart Research Institute Singapore, National Heart Centre Singapore, 5 Hospital Drive, Singapore, 169609, Singapore.
- Cardiovascular and Metabolic Disorders Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singapore.
| | - Kevin Tshun Chuan Chai
- Institute of Microelectronics, A*STAR, 11 Science Park Road, Singapore, 117685, Singapore.
| | - Chao Wang
- Institute of Microelectronics, A*STAR, 11 Science Park Road, Singapore, 117685, Singapore.
| | | | - Liang Zhong
- National Heart Research Institute Singapore, National Heart Centre Singapore, 5 Hospital Drive, Singapore, 169609, Singapore.
- Cardiovascular and Metabolic Disorders Program, Duke-NUS Graduate Medical School, 8 College Road, Singapore, 169857, Singapore.
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24
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A novel method for discrimination between innocent and pathological heart murmurs. Med Eng Phys 2015; 37:674-82. [DOI: 10.1016/j.medengphy.2015.04.013] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Revised: 11/18/2014] [Accepted: 04/25/2015] [Indexed: 11/21/2022]
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25
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Sung PH, Thompson WR, Wang JN, Wang JF, Jang LS. Computer-Assisted Auscultation: Patent Ductus Arteriosus Detection Based on Auditory Time–frequency Analysis. J Med Biol Eng 2015. [DOI: 10.1007/s40846-015-0008-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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26
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Šprager S, Zazula D. Detection of heartbeat and respiration from optical interferometric signal by using wavelet transform. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2013; 111:41-51. [PMID: 23537610 DOI: 10.1016/j.cmpb.2013.03.003] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/13/2012] [Revised: 01/21/2013] [Accepted: 03/05/2013] [Indexed: 06/02/2023]
Abstract
A novel approach for the heartbeat and respiration detection based on optical interferometer and wavelet transform is proposed in this paper. Optical interferometer is a sensitive device that detects physical elongation of optical fibre due to external perturbations. Mechanical activity of cardiac muscle and respiration reflects in interferometric signal when the interferometer is in contact with human body and, thus, enables unobtrusive detection of human vital signs. The efficiency and accuracy of the proposed approach was estimated in two experimental protocols. The first one collected interferometric signals from 20 subjects during rest. In the second experiment, 10 participants cycled an ergometer until reaching their submaximal heart rate, and were measured immediately after that. Heartbeat detection results show high efficiency (99.46±1.11% sensitivity, 99.60±1.05% precision) and accuracy (mean relative error (MRE) of beat-to-beat intervals 3.16±2.32%) for the first experiment, and slightly lower efficiency (96.22±2.96% sensitivity, 95.35±3.03% precision) and accuracy (MRE of 9.56±3.67%) for the second experiment. Considering respiration detection, high efficiency (97.64±7.28% sensitivity, 99.38±2.80% precision) and accuracy (MRE of intervals between respiration events 7.37±7.20%) for the first experiment, and acceptable efficiency (92.05±6.10% sensitivity, 93.45±3.08% precision) and accuracy (MRE of 16.28±6.25%) for the second experiment confirm a practical value of proposed approaches.
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Affiliation(s)
- Sebastijan Šprager
- University of Maribor, Faculty of Electrical Engineering and Computer Science, Smetanova ulica 17, SI-2000 Maribor, Slovenia.
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27
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Sprager S, Zazula D. Heartbeat and respiration detection from optical interferometric signals by using a multimethod approach. IEEE Trans Biomed Eng 2012; 59:2922-9. [PMID: 22907961 DOI: 10.1109/tbme.2012.2213302] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
In this paper, a multimethod approach for heartbeat and respiration detection from an optical interferometric signal is proposed. Optical interferometer is a sensitive device that detects physical changes of optical-fiber length due to external perturbations. When in direct or indirect contact with human body (e.g., hidden in a bed mattress), mechanical and acoustic activity of cardiac muscle and respiration reflect in the interferometric signal, enabling entirely unobtrusive monitoring of heartbeat and respiration. A novel, two-phased multimethod approach was developed for this purpose. The first phase selects best performing combinations of detection methods on a training set of signals. The second phase applies the selected methods to test set of signals and fuses all the detections of vital signs. The test set consisted of 14 subjects cycling an ergometer until reaching their submaximal heart rate. The following resting periods were analyzed showing high efficiency (98.18 ± 1.40% sensitivity and 97.04 ± 4.95% precision) and accuracy (mean absolute error of beat-to-beat intervals 22±9 ms) for heartbeat detection, and acceptable efficiency (90.06 ± 7.49% sensitivity and 94.21 ± 3.70% precision) and accuracy (mean absolute error of intervals between respiration events 0.33 ± 0.14 s) for respiration detection.
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Affiliation(s)
- Sebastijan Sprager
- Faculty of Electrical Engineering and Computer Science, University of Maribor, Maribor, Slovenia.
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28
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Sepúlveda-Cano LM, Gil E, Laguna P, Castellanos-Dominguez G. Sleep apnoea detection in children using PPG envelope-based dynamic features. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2011; 2011:1483-1486. [PMID: 22254600 DOI: 10.1109/iembs.2011.6090362] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Photopletysmography signal has been developed for monitoring of Obstructive Sleep Apnoea, in particular, whenever an apneic episode occurs, that is reflected by decreases in the photopletysmography signal amplitude fluctuation. However, other physiological events such as artifacts and deep inspiratory gasp produce sympathetic activation, being unrelated to apnea. Thus, its high sensitivity can produce misdetections and overestimate apneic episodes. In this regard, a methodology for selecting a set of relevant non-stationary features to increase the specificity of the obstructive sleep apnea detector is discussed. A time-evolving version of the standard linear multivariate decomposition is discussed to perform stochastic dimensionality reduction. As a result, performed outcomes of accuracy bring enough evidence that if using a subset of cepstral-based dynamic features, then patient classification accuracy is 83.3%. Therefore, photoplethysmography--based detection provides an adequate scheme for obstructive sleep apnea diagnosis.
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Affiliation(s)
- L M Sepúlveda-Cano
- Signal Processing and Recognition Group, Universidad Nacional de Colombia, sede Manizales.
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29
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Avendaño-Valencia LD, Martínez-Vargas JD, Giraldo E, Castellanos-Domíngue G. Reduction of irrelevant and redundant data from TFRs for EEG signal classification. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010; 2010:4010-3. [PMID: 21097281 DOI: 10.1109/iembs.2010.5627999] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Time-frequency representations (TFR) are one of the most popular characterization methods for non-stationary biosignals. Despite of their potential advantages, these representations suffer of large quantity of redundant and irrelevant data which makes them difficult to use for classification purposes. In this work, a methodology for reduction of irrelevant and redundant data is explored. This approach consists on removing irrelevant data, applying a relevance measure on the t-f plane that measures the dependence of each t-f point with the class labels. Then, principal component analysis (PCA) and partial least squares (PLS) are used as non-supervised and supervised linear decomposition approaches to reduce redundancy of remaining t-f points. Results show that the proposed methodology improves the performance of classifier up to 3% when no relevance and redundancy on TFRs is reduced.
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30
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Feature Extraction From Parametric Time–Frequency Representations for Heart Murmur Detection. Ann Biomed Eng 2010; 38:2716-32. [DOI: 10.1007/s10439-010-0077-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2009] [Accepted: 03/17/2010] [Indexed: 10/19/2022]
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31
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Sepulveda-Cano LM, Travieso-Gonzalez CM, Godino-Llorente JI, Castellanos-Dominguez G. On improvement of detection of Obstructive Sleep Apnea by partial least square-based extraction of dynamic features. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2010; 2010:6321-6324. [PMID: 21097169 DOI: 10.1109/iembs.2010.5627710] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
This paper presents a methodology for Obstructive Sleep Apnea (OSA) detection based on the HRV analysis, where as a measure of relevance PLS is used. Besides, two different combining approaches for the selection of the best set of contours are studied. Attained results can be oriented in research focused on finding alternative methods minimizing the HRV-derived parameters used for OSA diagnosing, with a diagnostic accuracy comparable to a polysomnogram. For two classes (normal, apnea) the results for PLS are: specificity 90%, sensibility 91% and accuracy 93.56%.
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Affiliation(s)
- L M Sepulveda-Cano
- Control and Digital Signal Processing Group, Universidad Nacional de Colombia, sede Manizales, Colombia.
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