Fuzzy C-mean based brain MRI segmentation algorithms

Survey of methods and principles in three-dimensional reconstruction from two-dimensional medical images

Three-dimensional (3D) reconstruction of human organs has gained attention in recent years due to advances in the Internet and graphics processing units. In the coming years, most patient care will shift toward this new paradigm. However, development of fast and accurate 3D models from medical images or a set of medical scans remains a daunting task due to the number of pre-processing steps involved, most of which are dependent on human expertise. In this review, a survey of pre-processing steps was conducted, and reconstruction techniques for several organs in medical diagnosis were studied. Various methods and principles related to 3D reconstruction were highlighted. The usefulness of 3D reconstruction of organs in medical diagnosis was also highlighted.

MRI brain segmentation based on improved global best-guided artificial bee colony.. [DOI: 10.21203/rs.3.rs-3097202/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0]

Brain Magnetic Resonance Imaging (MRI) plays a critical role in medical research and clinical applications, ranging from quantifying tissue volume, facilitating surgical simulations, assisting in treatment planning, enabling brain mapping, aiding in disease diagnosis, and evaluating therapeutic efficacy. This study introduces a novel method for MRI brain segmentation, which harnesses the power of a hybrid approach combining Artificial Bee Colony (ABC) algorithm with Fuzzy C-Means (FCM) clustering. Our approach leverages the exploration capability of the ABC algorithm, with an improved global best guidance (IABC), to optimally initialize the cluster centroid values of the FCM, thus enhancing the segmentation outputs. Comparative evaluation of the proposed method, denoted as IABC-FCM, conducted on a diverse set of MRI brain images, reveals its superior performance. The results indicate the potential of this hybrid approach as a robust tool for improved MRI brain segmentation tasks.

HMNet: Hierarchical Multi-Scale Brain Tumor Segmentation Network

An accurate and efficient automatic brain tumor segmentation algorithm is important for clinical practice. In recent years, there has been much interest in automatic segmentation algorithms that use convolutional neural networks. In this paper, we propose a novel hierarchical multi-scale segmentation network (HMNet), which contains a high-resolution branch and parallel multi-resolution branches. The high-resolution branch can keep track of the brain tumor's spatial details, and the multi-resolution feature exchange and fusion allow the network's receptive fields to adapt to brain tumors of different shapes and sizes. In particular, to overcome the large computational overhead caused by expensive 3D convolution, we propose a lightweight conditional channel weighting block to reduce GPU memory and improve the efficiency of HMNet. We also propose a lightweight multi-resolution feature fusion (LMRF) module to further reduce model complexity and reduce the redundancy of the feature maps. We run tests on the BraTS 2020 dataset to determine how well the proposed network would work. The dice similarity coefficients of HMNet for ET, WT, and TC are 0.781, 0.901, and 0.823, respectively. Many comparative experiments on the BraTS 2020 dataset and other two datasets show that our proposed HMNet has achieved satisfactory performance compared with the SOTA approaches.

Fuzzy Clustering Algorithm Based on Improved Global Best-Guided Artificial Bee Colony with New Search Probability Model for Image Segmentation

Clustering using fuzzy C-means (FCM) is a soft segmentation method that has been extensively investigated and successfully implemented in image segmentation. FCM is useful in various aspects, such as the segmentation of grayscale images. However, FCM has some limitations in terms of its selection of the initial cluster center. It can be easily trapped into local optima and is sensitive to noise, which is considered the most challenging issue in the FCM clustering algorithm. This paper proposes an approach to solve FCM problems in two phases. Firstly, to improve the balance between the exploration and exploitation of improved global best-guided artificial bee colony algorithm (IABC). This is achieved using a new search probability model called PIABC that improves the exploration process by choosing the best source of food which directly affects the exploitation process in IABC. Secondly, the fuzzy clustering algorithm based on PIABC, abbreviated as PIABC-FCM, uses the balancing of PIABC to avoid getting stuck into local optima while searching for the best solution having a set of cluster center locations of FCM. The proposed method was evaluated using grayscale images. The performance of the proposed approach shows promising outcomes when compared with other related works.

Diagnosis of infertility from adenomyosis and endometriosis through entroxon based intelligent water drop back propagation neural networks

Adenomyosis is an abnormality in the uterine wall of women that adversely affects their normal life style. If not treated properly, it may lead to severe health issues. The symptoms of adenomyosis are identified from MRI images. It is a gynaecological disease that may lead to infertility. The presence of red dots in the uterus is the major symptom of adenomyosis. The difference in the extent of these red dots extracted from MRI images shows how significant the deviation from normality is. Thus, we proposed an entroxon-based bio-inspired intelligent water drop back-propagation neural network (BIWDNN) model to discover the probability of infertility being caused by adenomyosis and endometriosis. First, vital features from the images are extracted and segmented, and then they are classified using the fuzzy C-means clustering algorithm. The extracted features are then attributed and compared with a normal person’s extracted attributes. The proposed BIWDNN model is evaluated using training and testing datasets and the predictions are estimated using the testing dataset. The proposed model produces an improved diagnostic precision rate on infertility.

3D AGSE-VNet: an automatic brain tumor MRI data segmentation framework

BACKGROUND

Glioma is the most common brain malignant tumor, with a high morbidity rate and a mortality rate of more than three percent, which seriously endangers human health. The main method of acquiring brain tumors in the clinic is MRI. Segmentation of brain tumor regions from multi-modal MRI scan images is helpful for treatment inspection, post-diagnosis monitoring, and effect evaluation of patients. However, the common operation in clinical brain tumor segmentation is still manual segmentation, lead to its time-consuming and large performance difference between different operators, a consistent and accurate automatic segmentation method is urgently needed. With the continuous development of deep learning, researchers have designed many automatic segmentation algorithms; however, there are still some problems: (1) The research of segmentation algorithm mostly stays on the 2D plane, this will reduce the accuracy of 3D image feature extraction to a certain extent. (2) MRI images have gray-scale offset fields that make it difficult to divide the contours accurately.

METHODS

To meet the above challenges, we propose an automatic brain tumor MRI data segmentation framework which is called AGSE-VNet. In our study, the Squeeze and Excite (SE) module is added to each encoder, the Attention Guide Filter (AG) module is added to each decoder, using the channel relationship to automatically enhance the useful information in the channel to suppress the useless information, and use the attention mechanism to guide the edge information and remove the influence of irrelevant information such as noise.

RESULTS

We used the BraTS2020 challenge online verification tool to evaluate our approach. The focus of verification is that the Dice scores of the whole tumor, tumor core and enhanced tumor are 0.68, 0.85 and 0.70, respectively.

CONCLUSION

Although MRI images have different intensities, AGSE-VNet is not affected by the size of the tumor, and can more accurately extract the features of the three regions, it has achieved impressive results and made outstanding contributions to the clinical diagnosis and treatment of brain tumor patients.

Recent Advancements in Fuzzy C-means Based Techniques for Brain MRI Segmentation

BACKGROUND

Variations of image segmentation techniques, particularly those used for Brain MRI segmentation, vary in complexity from basic standard Fuzzy C-means (FCM) to more complex and enhanced FCM techniques.

OBJECTIVE

In this paper, a comprehensive review is presented on all thirteen variations of FCM segmentation techniques. In the review process, the concentration is on the use of FCM segmentation techniques for brain tumors. Brain tumor segmentation is a vital step in the process of automatically diagnosing brain tumors. Unlike segmentation of other types of images, brain tumor segmentation is a very challenging task due to the variations in brain anatomy. The low contrast of brain images further complicates this process. Early diagnosis of brain tumors is indeed beneficial to patients, doctors, and medical providers.

RESULTS

FCM segmentation works on images obtained from magnetic resonance imaging (MRI) scanners, requiring minor modifications to hospital operations to early diagnose tumors as most, if not all, hospitals rely on MRI machines for brain imaging.

CONCLUSION

In this paper, we critically review and summarize FCM based techniques for brain MRI segmentation.

Brain Tissue Segmentation and Bias Field Correction of MR Image Based on Spatially Coherent FCM with Nonlocal Constraints

Influenced by poor radio frequency field uniformity and gradient-driven eddy currents, intensity inhomogeneity (or bias field) and noise appear in brain magnetic resonance (MR) image. However, some traditional fuzzy c-means clustering algorithms with local spatial constraints often cannot obtain satisfactory segmentation performance. Therefore, an objective function based on spatial coherence for brain MR image segmentation and intensity inhomogeneity correction simultaneously is constructed in this paper. First, a novel similarity measure including local neighboring information is designed to improve the separability of MR data in Gaussian kernel mapping space without image smoothing, and the similarity measure incorporates the spatial distance and grayscale difference between cluster centroid and its neighborhood pixels. Second, the objective function with an adaptive nonlocal spatial regularization term is drawn upon to compensate the drawback of the local spatial information. Meanwhile, bias field information is also embedded into the similarity measure of clustering algorithm. From the comparison between the proposed algorithm and the state-of-the-art methods, our model is more robust to noise in the brain magnetic resonance image, and the bias field is also effectively estimated.

DCS-SVM: a novel semi-automated method for human brain MR image segmentation

In this paper, a novel method is proposed which appropriately segments magnetic resonance (MR) brain images into three main tissues. This paper proposes an extension of our previous work in which we suggested a combination of multiple classifiers (CMC)-based methods named dynamic classifier selection-dynamic local training local Tanimoto index (DCS-DLTLTI) for MR brain image segmentation into three main cerebral tissues. This idea is used here and a novel method is developed that tries to use more complex and accurate classifiers like support vector machine (SVM) in the ensemble. This work is challenging because the CMC-based methods are time consuming, especially on huge datasets like three-dimensional (3D) brain MR images. Moreover, SVM is a powerful method that is used for modeling datasets with complex feature space, but it also has huge computational cost for big datasets, especially those with strong interclass variability problems and with more than two classes such as 3D brain images; therefore, we cannot use SVM in DCS-DLTLTI. Therefore, we propose a novel approach named "DCS-SVM" to use SVM in DCS-DLTLTI to improve the accuracy of segmentation results. The proposed method is applied on well-known datasets of the Internet Brain Segmentation Repository (IBSR) and promising results are obtained.

Magnetic resonance image tissue classification using an automatic method

Background

Brain segmentation in magnetic resonance images (MRI) is an important stage in clinical studies for different issues such as diagnosis, analysis, 3-D visualizations for treatment and surgical planning. MR Image segmentation remains a challenging problem in spite of different existing artifacts such as noise, bias field, partial volume effects and complexity of the images. Some of the automatic brain segmentation techniques are complex and some of them are not sufficiently accurate for certain applications. The goal of this paper is proposing an algorithm that is more accurate and less complex).

Methods

In this paper we present a simple and more accurate automated technique for brain segmentation into White Matter, Gray Matter and Cerebrospinal fluid (CSF) in three-dimensional MR images. The algorithm’s three steps are histogram based segmentation, feature extraction and final classification using SVM. The integrated algorithm has more accurate results than what can be obtained with its individual components. To produce much more efficient segmentation method our framework captures different types of features in each step that are of special importance for MRI, i.e., distributions of tissue intensities, textural features, and relationship with neighboring voxels or spatial features.

Results

Our method has been validated on real images and simulated data, with desirable performance in the presence of noise and intensity inhomogeneities.

Conclusions

The experimental results demonstrate that our proposed method is a simple and accurate technique to define brain tissues with high reproducibility in comparison with other techniques.

Virtual Slides

The virtual slide(s) for this article can be found here: http://www.diagnosticpathology.diagnomx.eu/vs/13000_2014_207