1
|
Yang M, Wen G, Cao S, Li K, Huang T, Ji G, Wang S, Xue R, Cao R. The formation of double metalimnetic oxygen minima in a drinking water reservoir and its influence on bacterial community. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 860:160540. [PMID: 36574553 DOI: 10.1016/j.scitotenv.2022.160540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 11/23/2022] [Accepted: 11/23/2022] [Indexed: 06/17/2023]
Abstract
Metalimnetic oxygen minima has been reported in many lakes and reservoirs, but the double metalimnetic oxygen minima (DMOM) is so far poorly understood. In this work, we first reported DMOM in the Sanhekou Reservoir, and investigated its formation reason and influence on the bacterial community composition (BCC). The results showed that the two anaerobic layers were formed in DMOM, located at 10 m and 45 m approximately. The rapid water storage process and thermal stratification resulted in the double metalimnions. Algal accumulation, decomposition and oxygen consumption in these regions during the sedimentation process eventually leaded to the formation of DMOM. Water temperature and DO gradients made outstanding contributions to the spatiotemporal environmental heterogeneity and significantly affected the BCC. Depending on the distribution of dissolved oxygen (DO), the storage process could be divided into three periods: DMOM, single MOM period and mixed period. Exiguobacterium and Ralstonia were dominated in DMOM due to the soil discharge and plant decomposition. Besides, BCC presented the largest vertical difference in DMOM and existed the interlayer-similar phenomenon (BCC in the two anaerobic layers were more similar). This study explained the formation of DMOM and its influence on BCC, which was helpful to understand the response of BCC to the storage process and unique DO structure in a moderate eutrophication reservoir.
Collapse
Affiliation(s)
- Meng Yang
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| | - Gang Wen
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China.
| | - Shuangli Cao
- Hanjiang to Weihe River Valley Water Diversion Project Construction Co. Ltd., Shaanxi Province, Xi'an 710055, People's Republic of China
| | - Kai Li
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| | - Tinglin Huang
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| | - Gang Ji
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| | - Sihan Wang
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| | - Ruikang Xue
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| | - Ruihua Cao
- Key Laboratory of Northwest Water Resource, Environment and Ecology, MOE, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China; Shaanxi Key Laboratory of Environmental Engineering, Xi'an University of Architecture and Technology, Xi'an 710055, People's Republic of China
| |
Collapse
|
2
|
Yan Q, Deng J, Wang F, Liu Y, Liu K. Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes. Front Microbiol 2021; 12:695465. [PMID: 34745022 PMCID: PMC8567192 DOI: 10.3389/fmicb.2021.695465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 08/09/2021] [Indexed: 11/13/2022] Open
Abstract
Microbial communities normally comprise a few core species and large numbers of satellite species. These two sub-communities have different ecological and functional roles in natural environments, but knowledge on the assembly processes and co-occurrence patterns of the core and satellite species in Tibetan lakes is still sparse. Here, we investigated the ecological processes and co-occurrence relationships of the core and satellite bacterial sub-communities in the Tibetan lakes via 454 sequencing of 16S rRNA gene. Our studies indicated that the core and satellite bacterial sub-communities have similar dominant phyla (Proteobacteria, Bacteroidetes, and Actinobacteria). But the core sub-communities were less diverse and exhibited a stronger distance-decay relationship than the satellite sub-communities. In addition, topological properties of nodes in the network demonstrated that the core sub-communities had more complex and stable co-occurrence associations and were primarily driven by stochastic processes (58.19%). By contrast, the satellite sub-communities were mainly governed by deterministic processes (62.17%). Overall, this study demonstrated the differences in the core and satellite sub-community assembly and network stability, suggesting the importance of considering species traits to understand the biogeographic distribution of bacterial communities in high-altitude lakes.
Collapse
Affiliation(s)
- Qi Yan
- School of Life Sciences, Lanzhou University, Lanzhou, China.,Center for the Pan-Third Pole Environment, Lanzhou University, Lanzhou, China
| | - Jianming Deng
- School of Life Sciences, Lanzhou University, Lanzhou, China.,State Key Laboratory of Grassland and Agro-Ecosystems, School of Life Sciences, Lanzhou University, Lanzhou, China
| | - Feng Wang
- State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China.,College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, China
| | - Yongqin Liu
- Center for the Pan-Third Pole Environment, Lanzhou University, Lanzhou, China.,State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China
| | - Keshao Liu
- State Key Laboratory of Tibetan Plateau Earth System, Resources and Environment (TPESRE), Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China
| |
Collapse
|
3
|
Zhu D, Shen G, Wang Z, Han R, Long Q, Gao X, Xing J, Li Y, Wang R. Distinctive distributions of halophilic Archaea across hypersaline environments within the Qaidam Basin of China. Arch Microbiol 2021; 203:2029-2042. [PMID: 33554274 DOI: 10.1007/s00203-020-02181-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2020] [Revised: 11/12/2020] [Accepted: 12/31/2020] [Indexed: 10/22/2022]
Abstract
Halophilic Archaea are widely distributed globally in hypersaline environments. However, little is known of how dominant halophilic archaeal genera are distributed across environments and how they may co-associate across ecosystems. Here, the archaeal community composition and diversity from hypersaline environments (> 300 g/L salinity; total of 33 samples) in the Qaidam Basin of China were investigated using high-throughput Illumina sequencing of 16S rRNA genes. The archaeal communities (total of 3,419 OTUs) were dominated by the class Halobacteria (31.7-99.6% relative abundances) within the phylum Euryarchaeota (90.8-99.9%). Five predominant taxa, including Halorubrum, Halobacterium, Halopenitus, Methanothrix, and Halomicrobium, were observed across most samples. However, several distinct genera were associated with individual samples and were inconsistently distributed across samples, which contrast with previous studies of hypersaline archaeal communities. Additionally, co-occurrence network analysis indicated that five network clusters were present and potentially reflective of interspecies interactions among the environments, including three clusters (clusters II, III, and IV) comprising halophilic archaeal taxa within the Halobacteriaceae and Haloferacaceae families. In addition, two other clusters (clusters I and V) were identified that comprised methanogens. Finally, salinity comprising ionic concentrations (in the order of Na+ > Ca2+ > Mg2+) and pH were most correlated with taxonomic distributions across sample sites.
Collapse
Affiliation(s)
- Derui Zhu
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Guoping Shen
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Zhibo Wang
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Rui Han
- Qinghai Key Laboratory of Vegetable Genetics and Physiology, Academy of Agriculture and Forestry Sciences, Qinghai University, Xining, 810016, Qinghai, China
| | - Qifu Long
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Xiang Gao
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Jiangwa Xing
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Yongzhen Li
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China
| | - Rong Wang
- Research Center of Basic Medical Science, Medical College, Qinghai University, Xining, 810016, Qinghai, China.
| |
Collapse
|
4
|
Wu K, Zhao W, Li M, Picazo F, Soininen J, Shen J, Zhu L, Cheng X, Wang J. Taxonomic dependency of beta diversity components in benthic communities of bacteria, diatoms and chironomids along a water-depth gradient. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 741:140462. [PMID: 32886961 DOI: 10.1016/j.scitotenv.2020.140462] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Revised: 06/09/2020] [Accepted: 06/21/2020] [Indexed: 06/11/2023]
Abstract
Community variation (i.e., beta diversity) along geographical gradients is a well-known ecological pattern, but the corresponding variation in beta diversity components (e.g., species turnover and nestedness) and underlying drivers remain poorly understood. Based on two alternative approaches (that is, the beta diversity partitioning proposed by Baselga and the Local Contributions to Beta Diversity (LCBD) partitioning proposed by Legendre), we examined the patterns of beta diversity components of lacustrine benthos, from bacteria to diatoms and chironomids, in the surface sediments along a 100-m water-depth gradient in Lugu Lake. We further quantified the relative importance of spatial, environmental and biotic variables in explaining water-depth patterns in beta diversity. Based on the Baselga's framework, there was a taxonomic dependency for the patterns of beta diversity components with water-depth, showing a significant species turnover pattern for bacteria, while diatoms and chironomids showed significant nestedness. This dependency was also evident in the patterns of community uniqueness with water-depth because based on Legendre's framework, the LCBD decreased with water depth for bacteria whereas increased with depth for diatoms. The total beta diversity and species turnover of bacteria could be explained by the pure effects of spatial, environmental and biotic variables. A total of 26.8% and 23.6% of the nestedness component of diatoms and chironomids was explained by environmental variables, respectively, while species turnover was mostly related to spatial variables. Bacteria total LCBD and species replacement were driven only by environmental variables. For diatoms and chironomids, however, most of the total LCBD and its two components were explained by spatial variables, and biotic variables were most important for the diatom replacement component. Our findings provide insights into the mechanisms responsible for community organizations along water-depth gradients from the perspective of beta diversity components.
Collapse
Affiliation(s)
- Kaiyuan Wu
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China
| | - Wenqian Zhao
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; School of Biological Sciences, Nanjing Normal University, Nanjing 210046, China
| | - Mingjia Li
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Félix Picazo
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Janne Soininen
- Department of Geosciences and Geography, University of Helsinki, PO, Box 64, Helsinki FIN-00014, Finland
| | - Ji Shen
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China
| | - Lifeng Zhu
- School of Biological Sciences, Nanjing Normal University, Nanjing 210046, China
| | - Xiaoying Cheng
- School of Environment and Civil Engineering, Jiangnan University, Wuxi 214122, China.
| | - Jianjun Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing 210008, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| |
Collapse
|
5
|
Liu K, Hou J, Liu Y, Hu A, Wang M, Wang F, Chen Y, Gu Z. Biogeography of the free-living and particle-attached bacteria in Tibetan lakes. FEMS Microbiol Ecol 2020; 95:5513440. [PMID: 31183497 DOI: 10.1093/femsec/fiz088] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2019] [Accepted: 06/08/2019] [Indexed: 12/16/2022] Open
Abstract
The free-living (FL) and particle-attached (PA) bacteria have different dispersal potentials and ecological roles in aquatic ecosystems. However, our knowledge of their diversity and regional biogeographic patterns in high-altitude alpine lakes is limited. In this study, to investigate the diversity and geographic patterns of the FL and PA bacterial communities and to quantify the relative influence of environmental filtering and dispersal limitation in shaping the FL and PA bacterial communities, we collected surface water samples from 26 lakes over 1000 kilometers on the Tibetan Plateau. The majority of sequences exclusively in the FL bacteria were Actinobacteria (29.4%), Proteobacteria (27.7%) and Bacteroidetes (21.6%), while sequences exclusively in the PA bacteria were dominated by Proteobacteria (57.9%). The α-diversity indices, including Shannon index and Pielou's evenness, were significantly lower in the FL bacteria than that in PA bacteria. The surrounding soils as an important potential source contributed more to the diversity of the PA bacteria than the FL bacteria. Both of the FL and PA bacterial communities exhibited a significant regional distance-decay pattern. Environmental filtering and dispersal limitation were significantly related to the spatial variation of the FL and PA bacterial communities, whereas the environmental filtering/dispersal limitation effect ratio was higher in the FL bacterial communities. Our study is the first to describe the regional-scale spatial variability and to identify the factors that drive regional variability of the FL and PA bacterial communities in Tibetan lakes.
Collapse
Affiliation(s)
- Keshao Liu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Juzhi Hou
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences, Beijing 100101, China
| | - Yongqin Liu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences, Beijing 100101, China
| | - Anyi Hu
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Mingda Wang
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Feng Wang
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuying Chen
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhengquan Gu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| |
Collapse
|
6
|
Wang R, Han R, Long Q, Gao X, Xing J, Shen G, Zhu D. Bacterial and Archaeal Communities within an Ultraoligotrophic, High-altitude Lake in the Pre-Himalayas of the Qinghai-Tibet Plateau. Indian J Microbiol 2020; 60:363-373. [PMID: 32655200 DOI: 10.1007/s12088-020-00881-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2019] [Accepted: 05/06/2020] [Indexed: 11/25/2022] Open
Abstract
Puma Yumco Lake (PYL) is an ultraoligotrophic freshwater lake that sits an altitude of 5030 m within the Qinghai-Tibet Plateau of China. The bacterial and archaeal diversity of the lake remains poorly understood, despite their potential to inform on biogeochemical cycling and environment-microbial associations in these unique environments. Here, the bacterial and archaeal communities of PYL were investigated using high-throughput sequencing analysis of community 16S rRNA gene sequences. Further, the relationships among dominant taxa and environmental factors were comprehensively evaluated. Bacterial diversity comprised 31 phyla and 371 genera (10,645 operational taxonomic units [OTUs], Shannon index values of 5.21-6.16) and was significantly higher than that of Archaea (five phyla and 24 genera comprising 1141 OTUs and Shannon index values of 1.18-3.28). The bacterial communities were dominated by Proteobacteria (48.42-59.97% relative abundances), followed by Bacteroidetes (12.5-32.51%), Acidobacteria (2.07-11.56%), Firmicutes (0.65-6.32%), Planctomycetes (0.99-3.56%), Gemmatimonadetes (0.38-3.57%), Actinobacteria (1.67-3.52%), Verrucomicrobia (0.87-2.01%), and Chloroflexi (0.5-1.17%). In addition, archaeal communities were dominated by Thaumarchaeota (33.22-93.00%), followed by Euryarchaeota (2.89-35.47%), Woesearchaeota (0.99-31.04%), and Pacearchaeota (0.01-1.14%). The most abundant bacterial genus was Rhodoferax (5.73-26.62%) and the most abundant archaeal genus was the ammonia-oxidizing Nitrososphaera (29.18-91.46%). These results suggest that the Rhodoferax and Nitrososphaera are likely to participate in biogeochemical cycles in these environments through photoheterotrophy and nitrification, respectively. Taken together, these results provide valuable data for better understanding microbial interactions with each other and with these unique environments.
Collapse
Affiliation(s)
- Rong Wang
- Research Center of Basic Medical Science, Medical College of Qinghai University, Xining, 810016 Qinghai China
| | - Rui Han
- Qinghai Key Laboratory of Vegetable Genetics and Physiology, Academy of Agriculture and Forestry Sciences, Qinghai University, Xining, 810016 Qinghai China
| | - Qifu Long
- Research Center of Basic Medical Science, Medical College of Qinghai University, Xining, 810016 Qinghai China
| | - Xiang Gao
- Research Center of Basic Medical Science, Medical College of Qinghai University, Xining, 810016 Qinghai China
| | - Jiangwa Xing
- Research Center of Basic Medical Science, Medical College of Qinghai University, Xining, 810016 Qinghai China
| | - Guoping Shen
- Research Center of Basic Medical Science, Medical College of Qinghai University, Xining, 810016 Qinghai China
| | - Derui Zhu
- Research Center of Basic Medical Science, Medical College of Qinghai University, Xining, 810016 Qinghai China
| |
Collapse
|
7
|
Liu K, Liu Y, Hu A, Wang F, Chen Y, Gu Z, Anslan S, Hou J. Different community assembly mechanisms underlie similar biogeography of bacteria and microeukaryotes in Tibetan lakes. FEMS Microbiol Ecol 2020; 96:5822764. [DOI: 10.1093/femsec/fiaa071] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2020] [Accepted: 04/18/2020] [Indexed: 01/05/2023] Open
Abstract
ABSTRACTGeographic patterns of bacteria and microeukaryotes have attracted increasing attention. However, mechanisms underlying geographic patterns in the community composition of both microbial groups are still poorly resolved. In particular, knowledge of whether bacterial communities and microeukaryotic communities are subject to the same or different assembly mechanisms is still limited. In this study, we investigated the biogeographic patterns of bacterial and microeukaryotic communities of 23 lakes on the Tibetan Plateau and quantified the relative influence of assembly mechanisms in shaping both microbial communities. Results showed that water salinity was the major driving force in controlling the community structures of bacteria and microeukaryotes. Although bacterial and microeukaryotic communities exhibited similar distance-decay patterns, the bacterial communities were mainly governed by environmental filtering (a niche-related process), whereas microeukaryotic communities were strongly driven by dispersal limitation (a neutral-related process). Furthermore, we found that bacteria exhibited wider niche breadths and higher dispersal ability but lower community stabilities than microeukaryotes. The similar distribution patterns but contrasting assembly mechanisms effecting bacteria and microeukaryotes resulted from the differences in dispersal ability and community stability. Our results highlight the importance of considering organism types in studies of the assembly mechanisms that shape microbial communities in microbial ecology.
Collapse
Affiliation(s)
- Keshao Liu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, 100101, China
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yongqin Liu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, 100101, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Anyi Hu
- CAS Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China
| | - Feng Wang
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yuying Chen
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Zhengquan Gu
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Sten Anslan
- Technische Universität Braunschweig, Zoological Institute, Mendelssohnstr. 4, 38106 Braunschweig, Germany
| | - Juzhi Hou
- Key Laboratory of Alpine Ecology, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences, Beijing 100101, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| |
Collapse
|
8
|
Feng C, Jia J, Wang C, Han M, Dong C, Huo B, Li D, Liu X. Phytoplankton and Bacterial Community Structure in Two Chinese Lakes of Different Trophic Status. Microorganisms 2019; 7:microorganisms7120621. [PMID: 31783682 PMCID: PMC6956004 DOI: 10.3390/microorganisms7120621] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 11/20/2019] [Accepted: 11/25/2019] [Indexed: 01/18/2023] Open
Abstract
Phytoplankton are the primary producers at the basis of aquatic food webs, and bacteria play an important role in energy flow and biochemical cycling in aquatic ecosystems. In this study, both the bacterial and phytoplankton communities were examined in the oligotrophic Lake Basomtso and the eutrophic Lake South (China). The results of this study showed that the phytoplankton density and diversity in the eutrophic lake were higher than those in the oligotrophic lake. Furthermore, Chlorophyta (68%) and Cryptophyta (24%) were the dominant groups in the eutrophic lake, while Bacillariophyta (95%) dominated in the oligotrophic lake. The bacterial communities in the waters and sediments of the two lakes were mainly composed of Proteobacteria (mean of 32%), Actinobacteria (mean of 25%), Bacteroidetes (mean of 12%), and Chloroflexi (mean of 6%). Comparative analysis showed that the abundance of bacteria in the eutrophic lake was higher than that in the oligotrophic lake (p < 0.05), but the bacterial diversity in the oligotrophic lake was higher than that in the eutrophic lake (p < 0.05). Finally, the bacterial abundance and diversity in the sediments of the two lakes were higher than those in the water samples (p < 0.05), and the Latescibacteria and Nitrospinae groups were identified only in the sediments. These results suggest that both the phytoplankton and bacterial communities differed considerably between the oligotrophic lake and the eutrophic lake.
Collapse
|
9
|
Wu K, Zhao W, Wang Q, Yang X, Zhu L, Shen J, Cheng X, Wang J. The Relative Abundance of Benthic Bacterial Phyla Along a Water-Depth Gradient in a Plateau Lake: Physical, Chemical, and Biotic Drivers. Front Microbiol 2019; 10:1521. [PMID: 31354648 PMCID: PMC6635551 DOI: 10.3389/fmicb.2019.01521] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2019] [Accepted: 06/18/2019] [Indexed: 02/01/2023] Open
Abstract
Water-depth biodiversity gradient, one of the typical biogeographical patterns on Earth, is understudied for bacteria in freshwater ecosystems, and thus left the underlying mechanisms poorly understood especially for benthic bacteria. Here, we investigated the water-depth distribution of surface sediment bacterial phyla and their driving factors in Lake Lugu, a plateau lake in Southwest China. Our results revealed that the relative abundance of 11 dominant bacterial phyla showed various water-depth patterns, such as increasing, decreasing, hump-shaped, and U-shaped patterns. These patterns across phyla were consistent with their different niche positions of water depth, while the occupancy-abundance relationships were not dependent on phylum attributes. Consistently, phylum abundance was best explained by water depth; other physical and chemical factors, such as metal ion concentrations, SiO2, and pH, can also explain the variations in some bacterial phyla. Chemical variables were the main drivers of the dominant bacterial phyla. However, biotic variables also showed substantial importance for some phyla, such as Planctomycetes, Actinobacteria, and WS3. This work could provide new insights into the general water-depth patterns and underlying mechanisms of the relative abundance of bacterial phyla in freshwater ecosystems.
Collapse
Affiliation(s)
- Kaiyuan Wu
- School of Environment and Civil Engineering, Jiangnan University, Wuxi, China.,State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Wenqian Zhao
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China.,School of Biological Sciences, Nanjing Normal University, Nanjing, China
| | - Qian Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Xiangdong Yang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Lifeng Zhu
- School of Biological Sciences, Nanjing Normal University, Nanjing, China
| | - Ji Shen
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China
| | - Xiaoying Cheng
- School of Environment and Civil Engineering, Jiangnan University, Wuxi, China
| | - Jianjun Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, China.,University of Chinese Academy of Sciences, Beijing, China
| |
Collapse
|
10
|
Partyka ML, Bond RF, Chase JA, Atwill ER. Spatial and temporal variability of bacterial indicators and pathogens in six California reservoirs during extreme drought. WATER RESEARCH 2018; 129:436-446. [PMID: 29179123 DOI: 10.1016/j.watres.2017.11.038] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Revised: 10/10/2017] [Accepted: 11/15/2017] [Indexed: 06/07/2023]
Abstract
California has one of the largest systems of surface water reservoirs in the world, providing irrigation water to California's agriculturally productive Central Valley. Irrigation water is recognized as a vehicle for the microbial contamination of raw produce and must be monitored according to new federal regulation. The purpose of this study was to further understanding of the variability of fecal indicator bacteria (Escherichia coli and fecal coliforms) and pathogens (E. coli O157:H7 (O157), non-O157 Shiga toxin-producing E. coli (STEC) and Salmonella) along both horizontal and vertical profiles within California reservoirs. Monthly sampling was conducted in six reservoirs located in the foothills of the Western Sierra Nevada during the summer irrigation season and extreme drought conditions of 2014 (n = 257). Concentrations of fecal indicator bacteria were highly variable between reservoirs (p < 0.05) and along the horizontal profile (p < 0.001) from upstream to downstream, with higher concentrations typically found outside of the reservoirs than within. Though many of the reservoirs were thermally stratified, bacterial concentrations were not associated with water temperature (p > 0.05) or any one particular depth strata (p < 0.05). However, prevalence of Salmonella and STEC (16/70 and 9/70 respectively) was higher in the deep strata than in mid or surface layers. We found no statistical association between samples collected downstream of reservoirs and those from the reservoirs themselves. Continued monitoring and modeling of both bacterial indicators and enteric pathogens are critical to our ability to estimate the risk of surface irrigation water supplies and make appropriate management decisions.
Collapse
Affiliation(s)
- Melissa L Partyka
- Western Center for Food Safety, School of Veterinary Medicine, University of California, Davis, USA.
| | - Ronald F Bond
- Western Center for Food Safety, School of Veterinary Medicine, University of California, Davis, USA
| | - Jennifer A Chase
- Western Center for Food Safety, School of Veterinary Medicine, University of California, Davis, USA
| | - Edward R Atwill
- Western Center for Food Safety, School of Veterinary Medicine, University of California, Davis, USA
| |
Collapse
|
11
|
Ma M, Du H, Wang D, Kang S, Sun T. Biotically mediated mercury methylation in the soils and sediments of Nam Co Lake, Tibetan Plateau. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2017; 227:243-251. [PMID: 28475977 DOI: 10.1016/j.envpol.2017.04.037] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2017] [Revised: 04/10/2017] [Accepted: 04/17/2017] [Indexed: 05/16/2023]
Abstract
Previous research found that methylmercury (MeHg) levels in the fish of Nam Co Lake of Tibetan Plateau were remarkably higher than those obtained from Hg-polluted areas, probably indicating a stronger biomagnification and higher MeHg transfer efficient. Until now, little research has been carried out on the distribution of Hg methylators here, which maybe important to explain the higher fish MeHg levels. MeHg concentrations were remarkably different between the soil and sediment samples in both seasons. Illumina MiSeq sequencing of 16S rRNA gene amplicons showed that species richness estimates of the soil and sediment samples were both quite low based on Ace and Chao estimators. Community composition differed between the sediment and bank soil samples. DsrB gene quantities were relatively high, but the hgcA quantities were low, which indicated that most of the SRB found may not be Hg methylators. It is predicted that strains in Ruminococcaceae may be the main Hg methylators in the sediment, whose Hg methylation abilities were lower comparing with those in δ-proteobacteria. The relative abundances of the genera that contain known Hg methylators were all below 0.8%, which may explain the relatively lower levels of MeHg in the sediment of Nam Co Lake compared to other aquatic systems. This may also reflect that Hg methylators were relatively rare among most clades and abiotically regulated Hg methylation may exert relatively more important role here.
Collapse
Affiliation(s)
- Ming Ma
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Research Center of Bioenergy and Bioremediation, Southwest University, Chongqing 400715, China
| | - Hongxia Du
- College of Resources and Environment, Southwest University, Chongqing 400715, China
| | - Dingyong Wang
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Research Center of Bioenergy and Bioremediation, Southwest University, Chongqing 400715, China.
| | - Shichang Kang
- Northeast Institute of Eco-Environment and Resources, CAS, Lanzhou, 730000, China.
| | - Tao Sun
- College of Resources and Environment, Southwest University, Chongqing 400715, China; Research Center of Bioenergy and Bioremediation, Southwest University, Chongqing 400715, China
| |
Collapse
|