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Rahman A, Roy KJ, Deb GK, Ha T, Rahman S, Aktar MK, Ali MI, Kafi MA, Choi JW. Nano-Enabled Antivirals for Overcoming Antibody Escaped Mutations Based SARS-CoV-2 Waves. Int J Mol Sci 2023; 24:13130. [PMID: 37685938 PMCID: PMC10488153 DOI: 10.3390/ijms241713130] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 08/11/2023] [Accepted: 08/21/2023] [Indexed: 09/10/2023] Open
Abstract
This review discusses receptor-binding domain (RBD) mutations related to the emergence of various SARS-CoV-2 variants, which have been highlighted as a major cause of repetitive clinical waves of COVID-19. Our perusal of the literature reveals that most variants were able to escape neutralizing antibodies developed after immunization or natural exposure, pointing to the need for a sustainable technological solution to overcome this crisis. This review, therefore, focuses on nanotechnology and the development of antiviral nanomaterials with physical antagonistic features of viral replication checkpoints as such a solution. Our detailed discussion of SARS-CoV-2 replication and pathogenesis highlights four distinct checkpoints, the S protein (ACE2 receptor coupling), the RBD motif (ACE2 receptor coupling), ACE2 coupling, and the S protein cleavage site, as targets for the development of nano-enabled solutions that, for example, prevent viral attachment and fusion with the host cell by either blocking viral RBD/spike proteins or cellular ACE2 receptors. As proof of this concept, we highlight applications of several nanomaterials, such as metal and metal oxide nanoparticles, carbon-based nanoparticles, carbon nanotubes, fullerene, carbon dots, quantum dots, polymeric nanoparticles, lipid-based, polymer-based, lipid-polymer hybrid-based, surface-modified nanoparticles that have already been employed to control viral infections. These nanoparticles were developed to inhibit receptor-mediated host-virus attachments and cell fusion, the uncoating of the virus, viral gene expression, protein synthesis, the assembly of progeny viral particles, and the release of the virion. Moreover, nanomaterials have been used as antiviral drug carriers and vaccines, and nano-enabled sensors have already been shown to enable fast, sensitive, and label-free real-time diagnosis of viral infections. Nano-biosensors could, therefore, also be useful in the remote testing and tracking of patients, while nanocarriers probed with target tissue could facilitate the targeted delivery of antiviral drugs to infected cells, tissues, organs, or systems while avoiding unwanted exposure of non-target tissues. Antiviral nanoparticles can also be applied to sanitizers, clothing, facemasks, and other personal protective equipment to minimize horizontal spread. We believe that the nanotechnology-enabled solutions described in this review will enable us to control repeated SAR-CoV-2 waves caused by antibody escape mutations.
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Affiliation(s)
- Aminur Rahman
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (A.R.); (K.J.R.); (S.R.); (M.K.A.); (M.I.A.)
| | - Kumar Jyotirmoy Roy
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (A.R.); (K.J.R.); (S.R.); (M.K.A.); (M.I.A.)
| | - Gautam Kumar Deb
- Department of Biotechnology, Bangladesh Livestock Research Institute, Dhaka 1341, Bangladesh;
| | - Taehyeong Ha
- Department of Chemical and Biomolecular Engineering, Sogang University, 35 Baekbeom-ro, Mapo-gu, Seoul 04107, Republic of Korea;
| | - Saifur Rahman
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (A.R.); (K.J.R.); (S.R.); (M.K.A.); (M.I.A.)
| | - Mst. Khudishta Aktar
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (A.R.); (K.J.R.); (S.R.); (M.K.A.); (M.I.A.)
| | - Md. Isahak Ali
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (A.R.); (K.J.R.); (S.R.); (M.K.A.); (M.I.A.)
| | - Md. Abdul Kafi
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh; (A.R.); (K.J.R.); (S.R.); (M.K.A.); (M.I.A.)
| | - Jeong-Woo Choi
- Department of Chemical and Biomolecular Engineering, Sogang University, 35 Baekbeom-ro, Mapo-gu, Seoul 04107, Republic of Korea;
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Adhesion and proliferation of living cell on surface functionalized with glycine nanostructures. NANO SELECT 2021. [DOI: 10.1002/nano.202100043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
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Kafi MA, Aktar K, Todo M, Dahiya R. Engineered chitosan for improved 3D tissue growth through Paxillin-FAK-ERK activation. Regen Biomater 2019; 7:141-151. [PMID: 32296533 PMCID: PMC7147363 DOI: 10.1093/rb/rbz034] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2019] [Revised: 08/25/2019] [Accepted: 09/07/2019] [Indexed: 01/15/2023] Open
Abstract
Scaffold engineering has attracted significant attention for three-dimensional (3D) growth, proliferation and differentiation of stem cells in vitro. Currently available scaffolds suffer from issues such as poor ability for cell adhesion, migration and proliferation. This paper addresses these issues with 3D porous chitosan scaffold, fabricated and functionalized with cysteine-terminated Arg-Gly-Asp (Cys-RGD) tri-peptide on their walls. The study reveals that the compressive moduli of the scaffold is independent to RGD functionalization but shows dependence on the applied freezing temperature (TM) during the fabrication process. The low freezing TM (-80°C) produces scaffold with high compressive moduli (14.64 ± 1.38 kPa) and high TM (-30°C) produces scaffold with low compressive moduli (5.6 ± 0.38 kPa). The Cys-RGD functionalized scaffolds lead to significant improvements in adhesion (150%) and proliferation (300%) of human mesenchymal stem cell (hMSC). The RGD-integrin coupling activates the focal adhesion signaling (Paxillin-FAK-ERK) pathways, as confirmed by the expression of p-Paxillin, p-FAK and p-ERK protein, and results in the observed improvement of cell adhesion and proliferation. The proliferation of hMSC on RGD functionalized surface was evaluated with scanning electron microscopy imaging and distribution though pore was confirmed by histochemistry of transversely sectioned scaffold. The hMSC adhesion and proliferation in scaffold with high compressive moduli showed a constant enhancement (with a slope value 9.97) of compressive strength throughout the experimental period of 28 days. The improved cell adhesion and proliferation with RGD functionalized chitosan scaffold, together with their mechanical stability, will enable new interesting avenues for 3D cell growth and differentiation in numerous applications including regenerative tissue implants.
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Affiliation(s)
- Md Abdul Kafi
- BEST Group, School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK.,Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh.,Research Institute for Applied Mechanics, Kyushu University, Kasuga, Fukuoka, Japan
| | - Khudishta Aktar
- BEST Group, School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
| | - Mitsugu Todo
- Research Institute for Applied Mechanics, Kyushu University, Kasuga, Fukuoka, Japan
| | - Ravinder Dahiya
- BEST Group, School of Engineering, University of Glasgow, Glasgow G12 8QQ, UK
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Advances in sensing and biosensing of bisphenols: A review. Anal Chim Acta 2017; 998:1-27. [PMID: 29153082 DOI: 10.1016/j.aca.2017.09.048] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2017] [Revised: 09/22/2017] [Accepted: 09/23/2017] [Indexed: 12/19/2022]
Abstract
Bisphenols (BPs) are well known endocrine disrupting chemicals (EDCs) that cause adverse effects on the environment, biotic life and human health. BPs have been studied extensively because of an increasing concern for the safety of the environment and for human health. They are major raw materials for manufacturing polycarbonates, thermal papers and epoxy resins and are considered hazardous environmental contaminants. A vast array of sensors and biosensors have been developed for the sensitive screening of BPs based on carbon nanomaterials (carbon nanotubes, fullerenes, graphene and graphene oxide), quantum dots, metal and metal oxide nanocomposites, polymer nanocomposites, metal organic frameworks, ionic liquids and molecularly imprinted polymers. This review is devoted mainly to a variety of sensitive, selective and reliable sensing and biosensing methods for the detection of BPs using electrochemistry, fluorescence, colorimetry, surface plasmon resonance, luminescence, ELISAs, circular dichroism, resonance Rayleigh scattering and adsorption techniques in plastic products, food samples, food packaging, industrial wastes, pharmaceutical products, human body fluids and many other matrices. It summarizes the advances in sensing and biosensing methods for the detection of BPs since 2010. Furthermore, the article discusses challenges and future perspectives in the development of novel sensing methods for the detection of BP analogs.
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Kafi MA, Cho HY, Choi JW. Engineered peptide-based nanobiomaterials for electrochemical cell chip. NANO CONVERGENCE 2016; 3:17. [PMID: 28191427 PMCID: PMC5271568 DOI: 10.1186/s40580-016-0077-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2016] [Accepted: 06/11/2016] [Indexed: 05/17/2023]
Abstract
Biomaterials having cell adhesion ability are considered to be integral part of a cell chip. A number of researches have been carried out to search for a suitable material for effective immobilization of cell on substrate. Engineered ECM materials or their components like collagen, Poly-l-Lysine (PLL), Arg-Gly-Asp (RGD) peptide have been extensively used for mammalian cell adhesion and proliferation with the aim of tissue regeneration or cell based sensing application. This review focuses on the various approaches for two- and three-dimensionally patterned nanostructures of a short peptide i.e. RGD peptide on chip surfaces together with their effects on cell behaviors and electrochemical measurements. Most of the study concluded with positive remarks on the well-oriented engineered RGD peptide over their homogenous thin film. The engineered RGD peptide not only influences cell adhesion, spreading and proliferation but also their periodic nano-arrays directly influence electrochemical measurements of the chips. The electrochemical signals found to be enhanced when RGD peptides were used in well-defined two-dimensional nano-arrays. The topographic alteration of three-dimensional structure of engineered RGD peptide was reported to be suitably contacted with the integrin receptors of cellular membrane which results indicated the enhanced cell-electrode adhesion and efficient electron exchange phenomenon. This enhanced electrochemical signal increases the sensitivity of the chip against the target analytes. Therefore, development of engineered cellular recognizable peptides and its 3D topological design for fabrication of cell chip will provide the synergetic effect on bio-affinity, sensitivity and accuracy for the in situ real-time monitoring of analytes.
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Affiliation(s)
- Md. Abdul Kafi
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensigh, 2202 Bangladesh
- Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul, 04107 South Korea
| | - Hyeon-Yeol Cho
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul, 04107 South Korea
| | - Jeong-Woo Choi
- Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul, 04107 South Korea
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul, 04107 South Korea
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Kafi MA, Cho HY, Choi JW. Neural Cell Chip Based Electrochemical Detection of Nanotoxicity. NANOMATERIALS (BASEL, SWITZERLAND) 2015; 5:1181-1199. [PMID: 28347059 PMCID: PMC5304640 DOI: 10.3390/nano5031181] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/21/2015] [Revised: 06/26/2015] [Accepted: 06/29/2015] [Indexed: 12/13/2022]
Abstract
Development of a rapid, sensitive and cost-effective method for toxicity assessment of commonly used nanoparticles is urgently needed for the sustainable development of nanotechnology. A neural cell with high sensitivity and conductivity has become a potential candidate for a cell chip to investigate toxicity of environmental influences. A neural cell immobilized on a conductive surface has become a potential tool for the assessment of nanotoxicity based on electrochemical methods. The effective electrochemical monitoring largely depends on the adequate attachment of a neural cell on the chip surfaces. Recently, establishment of integrin receptor specific ligand molecules arginine-glycine-aspartic acid (RGD) or its several modifications RGD-Multi Armed Peptide terminated with cysteine (RGD-MAP-C), C(RGD)₄ ensure farm attachment of neural cell on the electrode surfaces either in their two dimensional (dot) or three dimensional (rod or pillar) like nano-scale arrangement. A three dimensional RGD modified electrode surface has been proven to be more suitable for cell adhesion, proliferation, differentiation as well as electrochemical measurement. This review discusses fabrication as well as electrochemical measurements of neural cell chip with particular emphasis on their use for nanotoxicity assessments sequentially since inception to date. Successful monitoring of quantum dot (QD), graphene oxide (GO) and cosmetic compound toxicity using the newly developed neural cell chip were discussed here as a case study. This review recommended that a neural cell chip established on a nanostructured ligand modified conductive surface can be a potential tool for the toxicity assessments of newly developed nanomaterials prior to their use on biology or biomedical technologies.
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Affiliation(s)
- Md Abdul Kafi
- Department of Microbiology and Hygiene, Bangladesh Agricultural University, Mymensigh-2202, Bangladesh.
- Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul 121-742, Korea.
| | - Hyeon-Yeol Cho
- Department of Chemical and Bimolecular Engineering, Sogang University, Seoul 121-742, Korea.
| | - Jeong Woo Choi
- Interdisciplinary Program of Integrated Biotechnology, Sogang University, Seoul 121-742, Korea.
- Department of Chemical and Bimolecular Engineering, Sogang University, Seoul 121-742, Korea.
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Kim TH, El-Said WA, An JH, Choi JW. ITO/gold nanoparticle/RGD peptide composites to enhance electrochemical signals and proliferation of human neural stem cells. NANOMEDICINE-NANOTECHNOLOGY BIOLOGY AND MEDICINE 2013; 9:336-44. [DOI: 10.1016/j.nano.2012.08.006] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2011] [Revised: 07/12/2012] [Accepted: 08/13/2012] [Indexed: 01/09/2023]
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Electrochemical cell chip to detect environmental toxicants based on cell cycle arrest technique. Biosens Bioelectron 2013; 41:192-8. [DOI: 10.1016/j.bios.2012.08.023] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2012] [Revised: 08/06/2012] [Accepted: 08/08/2012] [Indexed: 01/26/2023]
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Kafi MA, Kim TH, An JH, Choi JW. Fabrication of Cell Chip for Detection of Cell Cycle Progression Based on Electrochemical Method. Anal Chem 2011; 83:2104-11. [DOI: 10.1021/ac102895b] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Md. Abdul Kafi
- Interdisciplinary Program of Integrated Biotechnology and ‡Department of Chemical & Biomolecular Engineering, Sogang University, Shinsu-Dong, Mapo-Gu, Seoul 121-742, Republic of Korea
| | - Tae-Hyung Kim
- Interdisciplinary Program of Integrated Biotechnology and ‡Department of Chemical & Biomolecular Engineering, Sogang University, Shinsu-Dong, Mapo-Gu, Seoul 121-742, Republic of Korea
| | - Jeung Hee An
- Interdisciplinary Program of Integrated Biotechnology and ‡Department of Chemical & Biomolecular Engineering, Sogang University, Shinsu-Dong, Mapo-Gu, Seoul 121-742, Republic of Korea
| | - Jeong-Woo Choi
- Interdisciplinary Program of Integrated Biotechnology and ‡Department of Chemical & Biomolecular Engineering, Sogang University, Shinsu-Dong, Mapo-Gu, Seoul 121-742, Republic of Korea
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