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Pei X, Wang J, Zheng H, Xiao Q, Wang A, Su W. Catalytically active inclusion bodies (CatIBs) induced by terminally attached self-assembling coiled-coil domains: To enhance the stability of (R)-hydroxynitrile lyase. Enzyme Microb Technol 2021; 153:109915. [PMID: 34670185 DOI: 10.1016/j.enzmictec.2021.109915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Revised: 09/04/2021] [Accepted: 09/07/2021] [Indexed: 11/18/2022]
Abstract
The catalytically-active inclusion bodies (CatIBs) represent a promising strategy for immobilizing enzyme without additional carriers and chemicals, which has aroused great attention in academic and industrial communities. In this work, we discovered two natural parallel right-handed coiled-coil tetramer peptides from PDB database by a structural mining strategy. The two self-assembling peptides, NSPdoT from rotavirus and HVdoT from human Vasodilator-stimulated phosphoprotein, efficiently induced the CatIBs formation of a (R)-Hydroxynitrile lyase from Arabidopsis thaliana (AtHNL) in Escherichia coli cells. This is convenient to simultaneously purify and immobilize the target proteins as biocatalysts. As expected, HVdoT-AtHNL and NSPdoT-AtHNL possessed drastically increased tolerance toward lower pH values, which will be very critical to synthesize cyanohydrins under acidic condition for suppressing the non-enzymatic side reaction. In addition. AtHNL-CatIBs are produced at high yield in host cells as bioactive microparticles, which exhibited high thermal and pH stabilities. Therefore, the CatIBs method represent a promising application for the immobilization of enzymes in the biocatalysis field.
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Affiliation(s)
- Xiaolin Pei
- Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology, Hangzhou, China; College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China.
| | - Jiapao Wang
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Haoteng Zheng
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Qinjie Xiao
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Anming Wang
- College of Material, Chemistry and Chemical Engineering, Hangzhou Normal University, Hangzhou, China
| | - Weike Su
- Collaborative Innovation Center of Yangtze River Delta Region Green Pharmaceuticals, Zhejiang University of Technology, Hangzhou, China.
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2
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Tomescu MS, Davids D, DuPlessis M, Darnhofer B, Birner-Gruenberger R, Archer R, Schwendenwein D, Thallinger G, Winkler M, Rumbold K. High-throughput in-field bioprospecting for cyanogenic plants and hydroxynitrile lyases. BIOCATAL BIOTRANSFOR 2020. [DOI: 10.1080/10242422.2020.1726895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
Affiliation(s)
- M. S. Tomescu
- School of Molecular and Cell Biology, University of the Witwatersrand, Johannesburg, South Africa
| | - D. Davids
- School of Molecular and Cell Biology, University of the Witwatersrand, Johannesburg, South Africa
| | - M. DuPlessis
- School of Molecular and Cell Biology, University of the Witwatersrand, Johannesburg, South Africa
| | - B. Darnhofer
- ACIB GmbH, Graz, Austria
- Institute for Pathology, Medical University of Graz, Graz, Austria
- Omics Center Graz, BioTechMed, Graz, Austria
| | - R. Birner-Gruenberger
- ACIB GmbH, Graz, Austria
- Institute for Pathology, Medical University of Graz, Graz, Austria
- Omics Center Graz, BioTechMed, Graz, Austria
| | - R. Archer
- National Herbarium, South African National Biodiversity Institute, Pretoria, South Africa
| | | | | | - M. Winkler
- ACIB GmbH, Graz, Austria
- Institute of Molecular Biotechnology, Graz University of Technology, NAWI Graz, Graz, Austria
| | - K. Rumbold
- School of Molecular and Cell Biology, University of the Witwatersrand, Johannesburg, South Africa
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3
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Jangir N, Preeti, Padhi SK. A study on increasing enzymatic stability and activity of Baliospermum montanum hydroxynitrile lyase in biocatalysis. Process Biochem 2020. [DOI: 10.1016/j.procbio.2019.10.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
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4
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Vilím J, Knaus T, Mutti FG. Catalytic Promiscuity of Galactose Oxidase: A Mild Synthesis of Nitriles from Alcohols, Air, and Ammonia. Angew Chem Int Ed Engl 2018; 57:14240-14244. [PMID: 30176101 PMCID: PMC6220830 DOI: 10.1002/anie.201809411] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Indexed: 11/26/2022]
Abstract
We report an unprecedented catalytically promiscuous activity of the copper-dependent enzyme galactose oxidase. The enzyme catalyses the one-pot conversion of alcohols into the related nitriles under mild reaction conditions in ammonium buffer, consuming ammonia as the source of nitrogen and dioxygen (from air at atmospheric pressure) as the only oxidant. Thus, this green method does not require either cyanide salts, toxic metals, or undesired oxidants in stoichiometric amounts. The substrate scope of the reaction includes benzyl and cinnamyl alcohols as well as 4- and 3-pyridylmethanol, giving access to valuable chemical compounds. The oxidation proceeds through oxidation from alcohol to aldehyde, in situ imine formation, and final direct oxidation to nitrile.
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Affiliation(s)
- Jan Vilím
- Van't Hoff Institute for Molecular Sciences, HIMS-BiocatUniversity of AmsterdamScience Park 9041098 XHAmsterdamThe Netherlands
| | - Tanja Knaus
- Van't Hoff Institute for Molecular Sciences, HIMS-BiocatUniversity of AmsterdamScience Park 9041098 XHAmsterdamThe Netherlands
| | - Francesco G. Mutti
- Van't Hoff Institute for Molecular Sciences, HIMS-BiocatUniversity of AmsterdamScience Park 9041098 XHAmsterdamThe Netherlands
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5
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Vilím J, Knaus T, Mutti FG. Catalytic Promiscuity of Galactose Oxidase: A Mild Synthesis of Nitriles from Alcohols, Air, and Ammonia. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201809411] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Jan Vilím
- Van't Hoff Institute for Molecular Sciences, HIMS-Biocat; University of Amsterdam; Science Park 904 1098 XH Amsterdam The Netherlands
| | - Tanja Knaus
- Van't Hoff Institute for Molecular Sciences, HIMS-Biocat; University of Amsterdam; Science Park 904 1098 XH Amsterdam The Netherlands
| | - Francesco G. Mutti
- Van't Hoff Institute for Molecular Sciences, HIMS-Biocat; University of Amsterdam; Science Park 904 1098 XH Amsterdam The Netherlands
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6
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Schwendenwein D, Winkler M, Archer R, Karl R. Screening for new plant hydroxynitrile lyases. N Biotechnol 2018. [DOI: 10.1016/j.nbt.2018.05.878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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7
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Yildirim D, Toprak A, Alagöz D, Tukel SS. Protein-coated microcrystals of Prunus armeniaca hydroxynitrile lyase: an effective and recyclable biocatalyst for synthesis of (R)-mandelonitrile. CHEMICAL PAPERS 2018. [DOI: 10.1007/s11696-018-0577-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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8
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Bracco P, Busch H, von Langermann J, Hanefeld U. Enantioselective synthesis of cyanohydrins catalysed by hydroxynitrile lyases - a review. Org Biomol Chem 2018; 14:6375-89. [PMID: 27282284 DOI: 10.1039/c6ob00934d] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The first enantioselective synthesis was the selective addition of cyanide to benzaldehyde catalysed by a hydroxynitrile lyase (HNL). Since then these enzymes have been developed into a reliable tool in organic synthesis. HNLs to prepare either the (R)- or the (S)-enantiomer of the desired cyanohydrin are available and a wide variety of reaction conditions can be applied. As a result of this, numerous applications of these enzymes in organic synthesis have been described. Here the examples of the last decade are summarised, the enzyme catalysed step is discussed and the follow-up chemistry is shown. This proves HNLs to be part of main stream organic synthesis. Additionally the newest approaches via immobilisation and reaction engineering are introduced.
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Affiliation(s)
- Paula Bracco
- Gebouw voor Scheikunde, Biokatalyse, Afdeling Biotechnologie, Technische Universiteit Delft, Julianalaan 136, 2628BL Delft, The Netherlands.
| | - Hanna Busch
- Gebouw voor Scheikunde, Biokatalyse, Afdeling Biotechnologie, Technische Universiteit Delft, Julianalaan 136, 2628BL Delft, The Netherlands.
| | - Jan von Langermann
- Institute of Chemistry, University of Rostock, Albert-Einstein-Str. 3a, 18059 Rostock, Germany
| | - Ulf Hanefeld
- Gebouw voor Scheikunde, Biokatalyse, Afdeling Biotechnologie, Technische Universiteit Delft, Julianalaan 136, 2628BL Delft, The Netherlands.
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9
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Nitrile Metabolizing Enzymes in Biocatalysis and Biotransformation. Appl Biochem Biotechnol 2018; 185:925-946. [DOI: 10.1007/s12010-018-2705-7] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2017] [Accepted: 01/19/2018] [Indexed: 11/26/2022]
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10
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Lanfranchi E, Grill B, Raghoebar Z, Van Pelt S, Sheldon RA, Steiner K, Glieder A, Winkler M. Production of Hydroxynitrile Lyase from Davallia tyermannii
(Dt
HNL) in Komagataella phaffii
and Its Immobilization as a CLEA to Generate a Robust Biocatalyst. Chembiochem 2017; 19:312-316. [DOI: 10.1002/cbic.201700419] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2017] [Indexed: 01/15/2023]
Affiliation(s)
- Elisa Lanfranchi
- acib GmbH; Petersgasse 14 8010 Graz Austria
- Present address: School of Food and Nutritional Sciences; University College Cork; College Road Cork Ireland
| | | | - Zainab Raghoebar
- CLEA-Technologies; Delftechpark 34 2628 XH Delft The Netherlands
- Present address: Avantium Chemicals BV; Zekeringstraat 29 1014 BV Amsterdam The Netherlands
| | - Sander Van Pelt
- CLEA-Technologies; Delftechpark 34 2628 XH Delft The Netherlands
- Present address: Bioprocess Pilot Facility B.V.; Alexander Fleminglaan 1 2613 AX Delft The Netherlands
| | - Roger A. Sheldon
- Molecular Sciences Institute; School of Chemistry; University of the Witwatersrand; Johannesburg PO Wits 2050 South Africa
| | | | - Anton Glieder
- acib GmbH; Petersgasse 14 8010 Graz Austria
- Institute for Molecular Biotechnology; Graz University of Technology; Petersgasse 14 8010 Graz Austria
| | - Margit Winkler
- acib GmbH; Petersgasse 14 8010 Graz Austria
- Institute for Molecular Biotechnology; Graz University of Technology; Petersgasse 14 8010 Graz Austria
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11
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Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily. Sci Rep 2017; 7:46738. [PMID: 28466867 PMCID: PMC5413884 DOI: 10.1038/srep46738] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 03/27/2017] [Indexed: 11/09/2022] Open
Abstract
Homology and similarity based approaches are most widely used for the identification of new enzymes for biocatalysis. However, they are not suitable to find truly novel scaffolds with a desired function and this averts options and diversity. Hydroxynitrile lyases (HNLs) are an example of non-homologous isofunctional enzymes for the synthesis of chiral cyanohydrins. Due to their convergent evolution, finding new representatives is challenging. Here we show the discovery of unique HNL enzymes from the fern Davallia tyermannii by coalescence of transcriptomics, proteomics and enzymatic screening. It is the first protein with a Bet v1-like protein fold exhibiting HNL activity, and has a new catalytic center, as shown by protein crystallography. Biochemical properties of D. tyermannii HNLs open perspectives for the development of a complementary class of biocatalysts for the stereoselective synthesis of cyanohydrins. This work shows that systematic integration of -omics data facilitates discovery of enzymes with unpredictable sequences and helps to extend our knowledge about enzyme diversity.
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12
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Padhi SK. Modern Approaches to Discovering New Hydroxynitrile Lyases for Biocatalysis. Chembiochem 2016; 18:152-160. [DOI: 10.1002/cbic.201600495] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2016] [Indexed: 11/08/2022]
Affiliation(s)
- Santosh Kumar Padhi
- Biocatalysis and Enzyme Engineering Laboratory; Department of Biochemistry; School of Life Sciences; University of Hyderabad; Hyderabad 500 046 India
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13
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Zhao Y, Chen N, Wang C, Cao Z. A Comprehensive Understanding of Enzymatic Catalysis by Hydroxynitrile Lyases with S Stereoselectivity from the α/β-Hydrolase Superfamily: Revised Role of the Active-Site Lysine and Kinetic Behavior of Substrate Delivery and Sequential Product Release. ACS Catal 2016. [DOI: 10.1021/acscatal.5b02855] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yuan Zhao
- The Key Laboratory of Natural Medicine
and Immuno-Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| | - Nanhao Chen
- School
of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou 510006, People’s Republic of China
| | - Chaojie Wang
- The Key Laboratory of Natural Medicine
and Immuno-Engineering, Henan University, Kaifeng 475004, People’s Republic of China
| | - Zexing Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and
Fujian Provincial Key Laboratory of Theoretical and Computational
Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 360015, People’s Republic of China
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