Looking to the past and the future: were the Madeira River rapids a geographical barrier to the boto (Cetacea: Iniidae)?

Virulence factors of Gram-negative bacteria from free-ranging Amazon river dolphins (Inia geoffrensis)

Freshwater cetaceans play a significant role as sentinel animals, providing important data on animal species and aquatic ecosystem health. They also may serve as potential reservoirs of emerging pathogens and host virulence genes in their microbiota. In this study, we evaluated virulence factors produced by Gram-negative bacteria recovered from individuals belonging to two populations of free-ranging Amazon river dolphins (Inia geoffrensis). A total of 132 isolates recovered from the oral cavity, blowhole, genital opening and rectum of 21 river dolphins, 13 from Negro River and 8 from Tapajós River, Brazil, were evaluated for the production of virulence factors, such as biofilms and exoproducts (proteases, hemolysins and siderophores), in planktonic and biofilm forms. In planktonic form, 81.1% (107/132) of the tested bacteria of free-ranging Amazon river dolphins were able to produce virulence factors, with 44/132 (33.4%), 65/132 (49,2%) and 54/132 (40,9%) positive for protease, hemolysin and siderophore production, respectively. Overall, 57/132 (43.2%) of the isolates produced biofilms and, under this form of growth, 66/132 (50%), 88/132 (66.7%) and 80/132 (60.6%) of the isolates were positive for protease, hemolysin and siderophore production. In general, the isolates showed a higher release of exoproducts in biofilm than in planktonic form (P < 0.001). The present findings show that Amazon river dolphins harbor potentially pathogenic bacteria in their microbiota, highlighting the importance of monitoring the micro-organisms from wild animals, as they may emerge as pathogens for humans and other animals.

Density and Abundance Estimation of Amazonian River Dolphins: Understanding Population Size Variability

The dolphins Inia geoffrensis—boto and Sotalia fluviatilis—tucuxi are threatened cetaceans inhabiting river ecosystems in South America; population numbers are still lacking for many areas. This paper provides density and abundance estimations of boto and tucuxi in 15 rivers sampled during the past nine years as part of a multinational research alliance. Visual boat-survey data collection protocols and analyses have been developed since 2012 (based on Distance Sampling methods) and recently reviewed (2019) to improve robustness and comparability. Differences across the sampled rivers and the analyzed river basins (Amazon and Orinoco) pointed to a density/population size gradient with lower densities and abundances observed in the Orinoco basin (0.9–1.5 ind./km²), passing through the eastern Amazon basin (2–5 ind./km²), and the largest numbers found at the central Brazilian Amazon (lower Purus River—2012 (14.5 boto/km², N = 7672; 17.1 tucuxi/km², N = 9238)). However, in other parts of the central Amazon, the density of dolphins was smaller than expected for high productive whitewater rivers (1–1.7 ind./km² in the Japurá and Solimões rivers). We attributed these differences to specific features of the basin (e.g., hydro-geomorphology) as well as to the cumulative effects of anthropogenic activities.

Total mercury and methylmercury in river dolphins (Cetacea: Iniidae: Inia spp.) in the Madeira River Basin, Western Amazon

In the Amazon, mercury (Hg) contamination comes from ASGM operations along with soil remobilization processes associated with deforestation. The objective of this study was to evaluate the exposure to methylmercury (MeHg) and total mercury (THg) in 88 samples of skin and blubber tissue obtained from live captured river dolphins (Inia boliviensis, Inia geoffrensis, and Inia spp.) in the Madeira River Basin. THg and MeHg measurements were performed by CV-AAS and GC-AFS, respectively. We also calculated the daily intake rate (DIR) of THg (wet weight) by Inia spp. THg levels in blubber tissue of adult river dolphins (Inia spp.) ranged from 0.015 to 3.804 mg kg^-1, while MeHg concentrations in blubber tissue varied from 0.04 to 2.65 mg kg^-1 and in skin tissue from 0.09 to 0.66 mg kg^-1. There were no significant differences in MeHg concentration in blubber (p = 0.616) and skin (p = 0.498) tissue samples between adult males and females in the different sampling locations. The adult animals showed differences in THg and MeHg concentrations significantly higher than in the calves. The estimate of the DIR of the genus Inia ranged from 1.17 to 12.35 μg kg^-1 day^-1 (bw), from the consumption of fish species with herbivorous to piscivorous habits, respectively. More biological and ecological data, such as the precise determination of age, mediated length, weight, and diet of river dolphins, are necessary to verify the Hg biomagnification. However, our data indicate that bioaccumulation is an active process in the dolphins of the Madeira River Basin.

Home range and movements of Amazon river dolphins Inia geoffrensis in the Amazon and Orinoco river basins

Studying the variables that describe the spatial ecology of threatened species allows us to identify and prioritize areas that are critical for species conservation. To estimate the home range and core area of the Endangered (EN) Amazon river dolphin Inia geoffrensis, 23 individuals (6&female;, 17&male;) were tagged during the rising water period in the Amazon and Orinoco river basins between 2017 and 2018. The satellite tracking period ranged from 24 to 336 d (mean ± SE = 107 ± 15.7 d), and river dolphin movements ranged from 7.5 to 298 km (58 ± 13.4 km). Kernel density estimates were used to determine minimum home ranges at 95% (K95 = 6.2 to 233.9 km2; mean = 59 ± 13.5 km2) and core areas at 50% (K50 = 0.6 to 54.9 km2; mean = 9 ± 2.6 km2). Protected areas accounted for 45% of the K50 estimated core area. We observed dolphin individuals crossing country borders between Colombia and Peru in the Amazon basin, and between Colombia and Venezuela in the Orinoco basin. Satellite tracking allowed us to determine the different uses of riverine habitat types: main rivers (channels and bays, 52% of recorded locations), confluences (32%), lagoons (9.6%), and tributaries (6.2%). Satellite monitoring allowed us to better understand the ecological preferences of the species and demonstrated the importance of maintaining aquatic landscape heterogeneity and spatial connectivity for effective river dolphin conservation.

The biosonar of the boto: evidence of differences among species of river dolphins (Inia spp.) from the Amazon

Echolocation clicks can reflect the anatomy of the vocalizing animal, enabling the distinction of species. River dolphins from the family Iniidae are formally represented by one species and two subspecies (Inia geoffrensis geoffrensis and I. g. humboldtiana). Additionally, two other species have been proposed (I. boliviensis and I. araguaiaensis) regarding its level of restricted distribution and morph-genetics differences. For the Committee on Taxonomy of the Society for Marine Mammalogy, the specific status of the proposed species relies on further knowledge on morphology, ecology, and genetics. Given that species-specific status is required for conservation efforts, we described and compared the echolocation clicks of Inia spp., searching for specific differences on their vocalizations. The sounds were captured with a Cetacean Research ™ C54XRS (+3/−20 dB, −185 dB re: 1V/μPa) in Guaviare River (Orinoco basin), Madeira River (Madeira basin), Xingu River (Amazon Basin), and Araguaia River (Tocantins-Araguaia basin). We found significant differences in all analyzed parameters (peak frequency, 3 dB bandwidth, 10 dB bandwidth and inter-click interval) for all species and subspecies. Differences in acoustical parameters of clicks are mainly related to the animal’s internal morphology, thus this study may potentially support with information for the species-level classification mostly of I. araguaiaensis (the Araguaian boto). Classifying the Araguaian boto separately from I. geoffrensis has important implications for the species in terms of conservation status, since it is restricted to a highly impacted river system.

Morfología del cráneo de <em>Inia geoffrensis humboldtiana</em> Pilleri & Gihr, 1977 (Cetacea: Iniidae): un análisis morfométrico y taxonómico

La morfología y anatomía de las dos subespecies actuales de Inia geoffrensis (Blainville, 1817) son muy similares. Debido a esto varios investigadores han evaluado la validez taxonómica de éstas. Con el fin de proporcionar información adicional para aclarar esta situación, se analizó la forma, el aspecto externo y las proporciones en 20 cráneos del delfín del río Orinoco, Inia geoffrensis humboldtiana Pilleri & Gihr, 1977. Para el análisis morfométrico, se seleccionaron 28 caracteres anatómicos más el recuento del número de alvéolos dentales. Todos los valores obtenidos en este estudio fueron analizados y comparados utilizando estadística univariada y multivariada con los datos publicados de Inia geoffrensis geoffrensis (Blainville, 1817). Tanto la “forma” como el “tamaño” del cráneo son componentes importantes de la diferenciación morfológica entre I. g. humboldtiana e I. g. geoffrensis. El análisis de la morfología craneal permitió identificar 10 caracteres que diferencian a I. g. humboldtiana de las demás subespecies y especies del género. Los análisis univariantes y multivariantes demostraron claras diferencias en la morfología craneal. La región facial concentra el 45,46% de esta variación y la región del cráneo presenta el 54,54%. 60,00% de las variables relacionadas directamente con la función de alimentación, en I. g. humboldtiana son más pequeñas que en I. g. geoffrensis. Mientras que el 24,00% de las variables asociadas a la configuración del cráneo presentan valores medios más altos. Para evaluar la diferenciación de cada subespecie se utilizó el análisis discriminante. El porcentaje de clasificación correcta por funciones discriminantes fue del 62,16%. La variación obtenida en este estudio permite sugerir que en I. g. humboldtiana las variables craneales han sido modificadas posiblemente como respuesta a presiones selectivas de tipo ambiental y ecológico. A pesar de cierta superposición, los resultados revelan suficientes pruebas para afirmar que las subespecies geoffrensis y humboldtiana son manifiestamente diferentes. Por lo tanto, y con base en las diferencias morfológicas y genéticas que existen entre estos taxones, se recomienda que el Inia del Orinoco sea considerado como una especie distinta o independiente.

Four decades of research on distribution and abundance of the Bolivian river dolphin Inia geoffrensis boliviensis

The Bolivian river dolphin, known locally as the bufeo, is one of 4 species of river dolphin in South America. Endemic to the upper basin of the Madeira in the Bolivian Amazon region, the species is categorized as Endangered on the IUCN Red List. This article provides information related to the geographic distribution of the species, and a review of the studies of its abundance that have been conducted in Bolivia since the 1970s. We discuss the surveys, the analysis methods used in the different studies, and the ways in which these methods might influence the population estimates. We found 63 population abundance estimates for the Bolivian river dolphin across 17 reviewed publications. These studies report relative abundance data for rivers that range from 0.2 to 2.81 bufeos km-1, and density ranges from 0 to 7.59 bufeos km-2. The information presented here reflects the knowledge of the population size of the species in Bolivia obtained over 4 decades, and will be useful for developing conservation strategies and as a tool for decision makers.

A Multilocus Approach to Understanding Historical and Contemporary Demography of the Keystone Floodplain Species Colossoma macropomum (Teleostei: Characiformes)

We studied the natural populations of a flagship fish species of the Amazon, Colossoma macropomum which in recent years has been suffering from severe exploitation. Our aim was to investigate the existence or not of genetic differentiation across the wide area of its distribution and to investigate changes in its effective population size throughout its evolutionary history. We sampled individuals from 21 locations distributed throughout the Amazon basin. We analyzed 539 individuals for mitochondrial genes (control region and ATPase gene 6/8), generating 1,561 base pairs, and genotyped 604 individuals for 13 microsatellite loci obtaining, on average, 21.4 alleles per locus. Mean H_E was 0.78 suggesting moderate levels of genetic variability. AMOVA and other tests used to detect the population structure based on both markers indicate that C. macropomum comprises a single and large panmitic population in the main channel of the Solimões-Amazonas River basin, on the other hand localities in the headwaters of the tributaries Juruá, Purus, Madeira, Tapajós, and localities of black water, showed genetic structure. The greatest genetic differentiation was observed between the Brazilian Amazon basin and the Bolivian sub-basin with restricted genetic flow between the two basins. Demographic analyzes of mitochondrial genes indicated population expansion in the Brazilian and Bolivian Amazon basins during the Pleistocene, and microsatellite data indicated a population reduction during the Holocene. This shows that the historical demography of C. macropomum is highly dynamic. Conservation and management strategies should be designed to respect the existing population structure and minimize the effects of overfishing by limiting fisheries C. macropomum populations.