Landscape determinants of genetic differentiation, inbreeding and genetic drift in the hazel dormouse (Muscardinus avellanarius)

One Step Away From Extinction: A Population Genomic Analysis of A Narrow Endemic, Tropical Plant Species

Intraspecific genetic variation plays a fundamental role in maintaining the evolutionary potential of wild populations. Hence, the assessment of genetic diversity patterns becomes essential to guide biodiversity conservation policies, particularly for threatened species. To inform management strategies for conservation of Mimosa catharinensis - a narrow endemic, critically endangered plant species - we identified 1,497 unlinked SNP markers derived from a reduced representation sequencing method (i.e., double digest restriction site associated DNA sequencing, or ddRADseq). This set of molecular markers was employed to assess intrapopulation genetic parameters and the demographic history of one extremely small population of M. catharinensis (N=33) located in the Brazilian Atlantic Forest. Contrary to what is expected for narrow endemic and threatened species with small population sizes, we observed a moderate level of genetic diversity for M. catharinensis [uH E(0%missing data)=0.205, 95% CI (0.160, 0.250); uH E(30%missing data)=0.233, 95% CI (0.174, 0.292)]. Interestingly, M. catharinensis, which is a lianescent shrub with no indication of seed production for at least two decades, presented high levels of outcrossing [t (0%missing data)=0.883, SE±0.0483; t (30%missing data)=0.909, SE±0.011] and an apparent absence of inbreeding [F (0%missing data)=-0.145, 95% CI (-0.189, -0.101); F (30%missing data)=-0.105, 95% CI (-0.199, -0.011)]. However, the reconstruction of demographic history of M. catharinensis indicated that the population should be suffered a recent bottleneck. Our population genomic study tackles a central issue in evolution and conservation biology and we expect that it will be useful to help safeguard the remaining genetic diversity reported for this unique genetic resource.

En route to the North: modelling crested porcupine habitat suitability and dispersal flows across a highly anthropized area in northern Italy

The crested porcupine (Hystrix cristata) underwent a rapid and widespread range expansion in Italy. Nowadays the species is moving towards the northernmost regions of the country and its occurrence is increasing in the highly anthropized Po Plain. Our objectives were to evaluate the suitability of the Po Plain for the species, as well as to identify dispersal corridors connecting the northern Apennines occurrence areas and the Prealps. We modelled the species home-range scale habitat suitability based on an ensemble modelling approach. Additionally, a habitat suitability prediction carried out at a finer scale was used to parametrize the landscape resistance, based on which we modelled the potential dispersal corridors for the species using a factorial least-cost path approach. The ensemble prediction estimated a potential occurrence of the crested porcupine in 27.4% of the study area. The species occurrence probability was mainly driven by the distribution of extensive cultivations, woodlands and shrublands, and water courses and by the annual mean temperature. Conversely, the movements of the species resulted mainly sustained by woodlands and shrublands and highly hindered by simple arable lands and rice paddies. The connectivity prediction showed that three main dispersal routes are likely to connect crested porcupine occurrence areas in the northern Apennines to currently unoccupied but highly suitable areas in the Prealps. The study allowed us to identify the areas in the Prealps with the highest probability to be colonized by the crested porcupine in the near future and provided important insights for the conservation of a strictly protected species in a human-dominated landscape.

Host Genetic Diversity and Infectious Diseases. Focus on Wild Boar, Red Deer and Tuberculosis

Host genetic diversity tends to limit disease spread in nature and buffers populations against epidemics. Genetic diversity in wildlife is expected to receive increasing attention in contexts related to disease transmission and human health. Ungulates such as wild boar (Sus scrofa) and red deer (Cervus elaphus) are important zoonotic hosts that can be precursors to disease emergence and spread in humans. Tuberculosis is a zoonotic disease with relevant consequences and can present high prevalence in wild boar and red deer populations. Here, we review studies on the genetic diversity of ungulates and determine to what extent these studies consider its importance on the spread of disease. This assessment also focused on wild boar, red deer, and tuberculosis. We found a disconnection between studies treating genetic diversity and those dealing with infectious diseases. Contrarily, genetic diversity studies in ungulates are mainly concerned with conservation. Despite the existing disconnection between studies on genetic diversity and studies on disease emergence and spread, the knowledge gathered in each discipline can be applied to the other. The bidirectional applications are illustrated in wild boar and red deer populations from Spain, where TB is an important threat for wildlife, livestock, and humans.

Combining ensemble models and connectivity analyses to predict wolf expected dispersal routes through a lowland corridor

The Italian wolf (Canis lupus italicus) population has remained isolated South of the Alps for the last few thousand years. After a strong decline, the species has recolonized the Apennines and the Western Alps, while it is currently struggling to colonize the Eastern Alps. Recently, the species was detected in a lowland park connecting the Northern Apennines to the Central Alps. If the park was able to sustain a net wolf dispersal flow, this could significantly boost the connection with the Eastern Alps and the Dinaric-Balkan population. We investigated the suitability of the park as a functional ecological corridor for the wolf through the unhospitable lowland of Northern Italy. We collected wolf occurrence data in two study areas. We modeled species distribution running a separate ensemble model for each study area and then merging the output of the models to obtain an integrated suitability map. We used this map to identify corridors for the wolf adopting a factorial least-cost path and a cumulative resistant kernel approach. The connectivity models showed that only two corridors exist in the lowland areas between the Northern Apennines and the Central Alps. The Western corridor is a blind route, while the eastern corridor passes through the park and has a continuous course. However, the models also revealed a scarce resilience of corridor connectivity in the passageways between the park and the Apennines and the Prealps, which suggests that urgent management actions are necessary to ensure the future functionality of this important corridor.

Hedgerow typology and condition analysis to inform greenway design in rural landscapes

Over the past decades, Western European hedgerows have been declining as a result of land use change. Disused infrastructure corridors such as railways and tramways can host a range of existing and returning semi-natural habitats, including extensive hedgerow networks. However, long term corridor abandonment can result in network deterioration to gappy hedgerows, lines of trees and eventually individual scrub features. The loss of hedgerows results in the loss of many ecosystem services, habitat for species and landscape connectivity. This highlights an increasing need to find innovative solutions to recognise and appropriately maintain these hedgerow networks. European Greenways typically 'upcycle' disused infrastructure transport corridors for multi-use, non-motorised recreational public infrastructure. The potential for European greenways to maintain and restore hedgerows is of interest as a novel planning mechanism for enhancing green infrastructure in general. The aim of this study is to inform Greenway design and management through the evaluation of hedgerow significance (historical, ecological and landscape), condition and composition within a rural European Greenway landscape context. 81 hedgerows were sampled along a 70 km proposed Greenway route traversing a range of extensive and intensive landscapes. Hedgerows were surveyed using a rapid field score sheet which enabled significance and condition scoring. A hedgerow typology was subsequently developed based on species composition assemblages. Hedgerows were found to be highly ecologically significant and species rich throughout the route. On-going land use intensification was evident as significant sections of the former railway corridor were subsumed into intensive agriculture and afforestation. Management recommendations need to be adapted to the particular hedgerow group and surrounding landscape context, and take into account the varied requirements of different taxonomic groups. The study findings show Greenways have the potential to act as multi-functional green infrastructure (accomplishing both ecological and recreational objectives) through informed design to reinforce their nature conservation role and recognising hedgerows as integral landscape feature of Greenway corridor, at local level and as part of a wider European network.