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Bhomkar SU, Naik SM. Unveiling the potential of microbial bioluminescence for marine pollution monitoring: a review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2025; 32:8679-8697. [PMID: 40095306 DOI: 10.1007/s11356-025-36208-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 02/27/2025] [Indexed: 03/19/2025]
Abstract
Marine pollution threatens global ecosystems, underscoring the urgent need for robust and efficient monitoring systems. Microbial bioluminescence has emerged as a promising tool for pollution detection, offering unique advantages due to its simplicity, sensitivity, and ecological relevance. This review explores the fundamental principles of bacterial and dinoflagellate bioluminescence, ecological significance, and their applications in marine pollution monitoring. Bioluminescence-based detection systems are broadly categorized into whole-cell biosensors (WCBs) and enzyme-based biosensors. WCBs are further classified into recombinant organisms based WCBs (Class I and Class II WCBs) and wild-type organisms based WCBs (Class III WCBs), demonstrating distinct pollutant detection and stress-response monitoring capabilities. We highlight their potential to improve pollution monitoring strategies by critically evaluating these technologies. Integrating bioluminescence-based systems into current frameworks could significantly enhance the assessment of marine ecosystem health, facilitate timely pollution management, and support the conservation and sustainable use of marine resources.
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Affiliation(s)
- Snesha Umesh Bhomkar
- School of Earth, Ocean, and Atmospheric Sciences, Goa University, Taleigao, 403206, Goa, India
- Discipline of Biotechnology, School of Biological Sciences and Biotechnology, Goa University, Taleigao, 403206, Goa, India
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2
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Esimbekova EN, Torgashina IG, Nemtseva EV, Kratasyuk VA. Enzymes Immobilized into Starch- and Gelatin-Based Hydrogels: Properties and Application in Inhibition Assay. MICROMACHINES 2023; 14:2217. [PMID: 38138386 PMCID: PMC10745932 DOI: 10.3390/mi14122217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 12/04/2023] [Accepted: 12/07/2023] [Indexed: 12/24/2023]
Abstract
The present work is a review of the research on using hydrogels based on natural biodegradable polymers, starch, and gelatin for enzyme immobilization. This review addresses the main properties of starch and gelatin that make them promising materials in biotechnology for producing enzyme preparations stable during use and storage and insensitive to chemical and physical impacts. The authors summarize their achievements in developing the preparations of enzymes immobilized in starch and gelatin gels and assess their activity, stability, and sensitivity for use as biorecognition elements of enzyme inhibition-based biosensors.
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Affiliation(s)
- Elena N. Esimbekova
- Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.N.E.); (I.G.T.); (E.V.N.)
- Laboratory of Photobiology, Institute of Biophysics of Siberian Branch of Russian Academy of Science, 660036 Krasnoyarsk, Russia
| | - Irina G. Torgashina
- Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.N.E.); (I.G.T.); (E.V.N.)
| | - Elena V. Nemtseva
- Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.N.E.); (I.G.T.); (E.V.N.)
- Laboratory of Photobiology, Institute of Biophysics of Siberian Branch of Russian Academy of Science, 660036 Krasnoyarsk, Russia
| | - Valentina A. Kratasyuk
- Institute of Fundamental Biology and Biotechnology, Siberian Federal University, 660041 Krasnoyarsk, Russia; (E.N.E.); (I.G.T.); (E.V.N.)
- Laboratory of Photobiology, Institute of Biophysics of Siberian Branch of Russian Academy of Science, 660036 Krasnoyarsk, Russia
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3
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Toxicity of Different Types of Surfactants via Cellular and Enzymatic Assay Systems. Int J Mol Sci 2022; 24:ijms24010515. [PMID: 36613956 PMCID: PMC9820146 DOI: 10.3390/ijms24010515] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Revised: 12/26/2022] [Accepted: 12/27/2022] [Indexed: 12/29/2022] Open
Abstract
Surfactants have a widespread occurrence, not only as household detergents, but also in their application in industry and medicine. There are numerous bioassays for assessing surfactant toxicity, but investigations of their impact on biological systems at the molecular level are still needed. In this paper, luminous marine bacteria and their coupled NAD(P)H:FMN-oxidoreductase + luciferase (Red + Luc) enzyme system was applied to examine the effects of different types of surfactants, including cationic cetyltrimethylammonium bromide (CTAB), non-ionic polyoxyethylene 20 sorbitan monooleate (Tween 80) and anionic sodium lauryl sulfate (SLS), and to assess whether the Red + Luc enzyme system can be used as a more sensitive indicator of toxicity. It was shown that the greatest inhibitory effect of the surfactants on the activity of luminous bacteria and the Red + Luc enzyme system was in the presence of SLS samples. The calculated IC50 and EC50 values of SLS were 10-5 M and 10-2 M for the enzymatic and cellular assay systems, respectively. The results highlight the benefits of using the enzymatic assay system in ecotoxicology as a tool for revealing surfactant effects on intracellular proteins if the cellular membrane is damaged under a long-term exposure period in the presence of the surfactants. For this purpose, the bioluminescent enzyme-inhibition-based assay could be used as an advanced research tool for the evaluation of surfactant toxicity at the molecular level of living organisms due to its technical simplicity and rapid response time.
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Yakimov AS, Denisov IA, Bukatin AS, Lukyanenko KA, Belousov KI, Kukhtevich IV, Esimbekova EN, Evstrapov AA, Belobrov PI. Droplet Microfluidic Device for Chemoenzymatic Sensing. MICROMACHINES 2022; 13:1146. [PMID: 35888963 PMCID: PMC9325247 DOI: 10.3390/mi13071146] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Revised: 07/15/2022] [Accepted: 07/18/2022] [Indexed: 12/14/2022]
Abstract
The rapid detection of pollutants in water can be performed with enzymatic probes, the catalytic light-emitting activity of which decreases in the presence of many types of pollutants. Herein, we present a microfluidic system for continuous chemoenzymatic biosensing that generates emulsion droplets containing two enzymes of the bacterial bioluminescent system (luciferase and NAD(P)H:FMN-oxidoreductase) with substrates required for the reaction. The developed chip generates "water-in-oil" emulsion droplets with a volume of 0.1 μL and a frequency of up to 12 drops per minute as well as provides the efficient mixing of reagents in droplets and their distancing. The bioluminescent signal from each individual droplet was measured by a photomultiplier tube with a signal-to-noise ratio of up to 3000/1. The intensity of the luminescence depended on the concentration of the copper sulfate with the limit of its detection of 5 μM. It was shown that bioluminescent enzymatic reactions could be carried out in droplet reactors in dispersed streams. The parameters and limitations required for the bioluminescent reaction to proceed were also studied. Hereby, chemoenzymatic sensing capabilities powered by a droplet microfluidics manipulation technique may serve as the basis for early-warning online water pollution systems.
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Affiliation(s)
- Anton S. Yakimov
- Laboratory of Physical and Chemical Technologies for the Development of Hard-to-Recover Hydrocarbon Reserves, Siberian Federal University, 660041 Krasnoyarsk, Russia;
| | - Ivan A. Denisov
- Laboratory of Physical and Chemical Technologies for the Development of Hard-to-Recover Hydrocarbon Reserves, Siberian Federal University, 660041 Krasnoyarsk, Russia;
- Laboratory of Bioluminescent Biotechnologies, Siberian Federal University, 660041 Krasnoyarsk, Russia;
| | - Anton S. Bukatin
- Laboratory of Renewable Energy Sources, Alferov University, 194021 Saint Petersburg, Russia; (A.S.B.); (K.I.B.)
- Institute for Analytical Instrumentation RAS, 194021 Saint Petersburg, Russia;
| | - Kirill A. Lukyanenko
- Laboratory of Bioluminescent Biotechnologies, Siberian Federal University, 660041 Krasnoyarsk, Russia;
- Laboratory for Biomolecular and Medical Technologies, Prof. V.F. Voino-Yasenetsky Krasnoyarsk State Medical University, 660022 Krasnoyarsk, Russia
- Laboratory for Digital Controlled Drugs and Theranostics, Federal Research Center “Krasnoyarsk Science Center SB RAS”, 660036 Krasnoyarsk, Russia
| | - Kirill I. Belousov
- Laboratory of Renewable Energy Sources, Alferov University, 194021 Saint Petersburg, Russia; (A.S.B.); (K.I.B.)
| | - Igor V. Kukhtevich
- Institute of Silicate Chemistry of RAS, 199034 Saint Petersburg, Russia;
- Institute of Functional Epigenetics, Helmholtz Zentrum München, 85764 Neuherberg, Germany
| | - Elena N. Esimbekova
- Institute of Biophysics SB RAS, 660036 Krasnoyarsk, Russia;
- Department of Biophysics, Siberian Federal University, 660041 Krasnoyarsk, Russia;
| | | | - Peter I. Belobrov
- Department of Biophysics, Siberian Federal University, 660041 Krasnoyarsk, Russia;
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Lisitsa AE, Sukovatyi LA, Bartsev SI, Deeva AA, Kratasyuk VA, Nemtseva EV. Mechanisms of Viscous Media Effects on Elementary Steps of Bacterial Bioluminescent Reaction. Int J Mol Sci 2021; 22:8827. [PMID: 34445534 PMCID: PMC8396235 DOI: 10.3390/ijms22168827] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2021] [Revised: 08/06/2021] [Accepted: 08/10/2021] [Indexed: 12/16/2022] Open
Abstract
Enzymes activity in a cell is determined by many factors, among which viscosity of the microenvironment plays a significant role. Various cosolvents can imitate intracellular conditions in vitro, allowing to reduce a combination of different regulatory effects. The aim of the study was to analyze the media viscosity effects on the rate constants of the separate stages of the bacterial bioluminescent reaction. Non-steady-state reaction kinetics in glycerol and sucrose solutions was measured by stopped-flow technique and analyzed with a mathematical model developed in accordance with the sequence of reaction stages. Molecular dynamics methods were applied to reveal the effects of cosolvents on luciferase structure. We observed both in glycerol and in sucrose media that the stages of luciferase binding with flavin and aldehyde, in contrast to oxygen, are diffusion-limited. Moreover, unlike glycerol, sucrose solutions enhanced the rate of an electronically excited intermediate formation. The MD simulations showed that, in comparison with sucrose, glycerol molecules could penetrate the active-site gorge, but sucrose solutions caused a conformational change of functionally important αGlu175 of luciferase. Therefore, both cosolvents induce diffusion limitation of substrates binding. However, in sucrose media, increasing enzyme catalytic constant neutralizes viscosity effects. The activating effect of sucrose can be attributed to its exclusion from the catalytic gorge of luciferase and promotion of the formation of the active site structure favorable for the catalysis.
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Affiliation(s)
- Albert E Lisitsa
- Biophysics Department, Siberian Federal University, Svobodny 79, 660041 Krasnoyarsk, Russia
| | - Lev A Sukovatyi
- Biophysics Department, Siberian Federal University, Svobodny 79, 660041 Krasnoyarsk, Russia
| | - Sergey I Bartsev
- Biophysics Department, Siberian Federal University, Svobodny 79, 660041 Krasnoyarsk, Russia
- The Institute of Biophysics SB RAS, Akademgorodok 50/50, 660036 Krasnoyarsk, Russia
| | - Anna A Deeva
- Biophysics Department, Siberian Federal University, Svobodny 79, 660041 Krasnoyarsk, Russia
| | - Valentina A Kratasyuk
- Biophysics Department, Siberian Federal University, Svobodny 79, 660041 Krasnoyarsk, Russia
- The Institute of Biophysics SB RAS, Akademgorodok 50/50, 660036 Krasnoyarsk, Russia
| | - Elena V Nemtseva
- Biophysics Department, Siberian Federal University, Svobodny 79, 660041 Krasnoyarsk, Russia
- The Institute of Biophysics SB RAS, Akademgorodok 50/50, 660036 Krasnoyarsk, Russia
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6
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Esimbekova EN, Torgashina IG, Kalyabina VP, Kratasyuk VA. Enzymatic Biotesting: Scientific Basis and Application. CONTEMP PROBL ECOL+ 2021. [DOI: 10.1134/s1995425521030069] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Kratasyuk VA, Stepanova LV, Ranjan R, Sutormin OS, Pande S, Zhukova GV, Miller OM, Maznyak NV, Kolenchukova OA. A noninvasive and qualitative bioluminescent assay for express diagnostics of athletes' responses to physical exertion. LUMINESCENCE 2020; 36:384-390. [PMID: 32986910 DOI: 10.1002/bio.3954] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2019] [Revised: 08/10/2020] [Accepted: 09/14/2020] [Indexed: 11/08/2022]
Abstract
Upcoming professional sports authorities seek rapid noninvasive biosensing tools for regular monitoring of athletes' physiological states. The analysis of saliva through luminescence-based biosensors has been perceived as a suitable candidate for such purposes. The present study reports a qualitative bioluminescence assay based on a coupled enzyme system that consists of bacterial luciferase (BLuc) and nicotinamide adenine dinucleotide (NADH):flavin mononucleotide (FMN) oxidoreductase (Red), BLuc-Red, for the express diagnostics of athletes' stress levels before and after physical exertion. The volunteers who participated in the study were grouped as freestyle wrestlers and students who adapted to different levels of physical activities. Under physical exertion modelling conditions, the influence of participant saliva on BLuc-Red catalyzed light emission was investigated. Results showed a significant increase in residual luminescence (Iexp , mean maximum bioluminescence intensity of the experimental measurement (Iexp ); Ic , luminescence intensity in control; Iexp /Ic , %) values for participants in the wrestler group while a decrease in the student group (P < 0.05). Such contrasting residual luminescence values in both groups were found to be dependent on the catalase activity of saliva. The proposed bioluminescence assay can be utilized as a potential nonspecific biosensing tool for determining the physical state of athletes under high loads.
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Affiliation(s)
- Valentina A Kratasyuk
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia.,Federal Research Center 'Krasnoyarsk Science Center SB RAS', Institute of Biophysics SB RAS, Akademgorodok 50/50, Krasnoyarsk, Russia
| | - Lyudmila V Stepanova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Rajeev Ranjan
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Oleg S Sutormin
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Shubhra Pande
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia.,Krasnoyarsk State Medical University named after professor V.F.Voyno-Yasenetsky of the Ministry of Health of the Russian Federation, Av. Partizan Zheleznyak 1, Krasnoyarsk, Russia
| | - Galina V Zhukova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Olga M Miller
- Krasnoyarsk Maternity and Childhood Protection Center, Kirenskogo Street 2a, Krasnoyarsk, Russia
| | - Natalya V Maznyak
- School of Non-Ferrous Metals and Materials Science, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia
| | - Oksana A Kolenchukova
- Department of Biophysics, Institute of Fundamental Biology and Biotechnology, Siberian Federal University, Svobodny prospect 79, Krasnoyarsk, Russia.,Scientific Research Institute of Medical Problems of the North, Av. Partizan Zheleznyak 3g, Krasnoyarsk, Russia
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8
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Kudryasheva NS, Kovel ES. Monitoring of Low-Intensity Exposures via Luminescent Bioassays of Different Complexity: Cells, Enzyme Reactions, and Fluorescent Proteins. Int J Mol Sci 2019; 20:E4451. [PMID: 31509958 PMCID: PMC6770735 DOI: 10.3390/ijms20184451] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Revised: 09/01/2019] [Accepted: 09/04/2019] [Indexed: 02/06/2023] Open
Abstract
The current paper reviews the applications of luminescence bioassays for monitoring the results of low-intensity exposures which produce a stimulative effect. The impacts of radioactivity of different types (alpha, beta, and gamma) and bioactive compounds (humic substances and fullerenols) are under consideration. Bioassays based on luminous marine bacteria, their enzymes, and fluorescent coelenteramide-containing proteins were used to compare the results of the low-intensity exposures at the cellular, biochemical, and physicochemical levels, respectively. High rates of luminescence response can provide (1) a proper number of experimental results under comparable conditions and, therefore, proper statistical processing, with this being highly important for "noisy" low-intensity exposures; and (2) non-genetic, i.e., biochemical and physicochemical mechanisms of cellular response for short-term exposures. The results of cellular exposures were discussed in terms of the hormesis concept, which implies low-dose stimulation and high-dose inhibition of physiological functions. Dependencies of the luminescence response on the exposure time or intensity (radionuclide concentration/gamma radiation dose rate, concentration of the bioactive compounds) were analyzed and compared for bioassays of different organization levels.
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Affiliation(s)
- Nadezhda S Kudryasheva
- Institute of Biophysics, Federal Research Center "Krasnoyarsk Science Center, Russian Academy of Sciences, Siberian Branch", Krasnoyarsk 660036, Russia.
- Siberian Federal University, Krasnoyarsk 660041, Russia.
| | - Ekaterina S Kovel
- Institute of Biophysics, Federal Research Center "Krasnoyarsk Science Center, Russian Academy of Sciences, Siberian Branch", Krasnoyarsk 660036, Russia
- Institute of Physics, Federal Research Center "Krasnoyarsk Science Center, Russian Academy of Sciences, Siberian Branch", Krasnoyarsk 660036, Russia
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9
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Kovel ES, Sachkova AS, Vnukova NG, Churilov GN, Knyazeva EM, Kudryasheva NS. Antioxidant Activity and Toxicity of Fullerenols via Bioluminescence Signaling: Role of Oxygen Substituents. Int J Mol Sci 2019; 20:ijms20092324. [PMID: 31083407 PMCID: PMC6539272 DOI: 10.3390/ijms20092324] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2019] [Revised: 05/04/2019] [Accepted: 05/09/2019] [Indexed: 12/17/2022] Open
Abstract
Fullerenols are nanosized water-soluble polyhydroxylated derivatives of fullerenes, a specific allotropic form of carbon, bioactive compounds, and perspective basis for drug development. Our paper analyzes the antioxidant activity and toxicity of a series of fullerenols with different number of oxygen substituents. Two groups of fullerenols were under investigation: (1) C60Oy(OH)x, C60,70Oy(OH)x, where x+y = 24–28 and (2) C60,70Oy(OH)x, Fe0,5C60Oy(OH)x, Gd@C82Oy(OH)x, where x+y = 40–42. Bioluminescent cellular and enzymatic assays (luminous marine bacteria and their enzymatic reactions, respectively) were applied to monitor toxicity in the model fullerenol solutions and bioluminescence was applied as a signaling physiological parameter. The inhibiting concentrations of the fullerenols were determined, revealing the fullerenols’ toxic effects. Antioxidant fullerenol’ ability was studied in solutions of model oxidizer, 1,4-benzoquinone, and detoxification coefficients of general and oxidative types (DGT and DOxT) were calculated. All fullerenols produced toxic effect at high concentrations (>0.01 g L−1), while their antioxidant activity was demonstrated at low and ultralow concentrations (<0.001 g L−1). Quantitative toxic and antioxidant characteristics of the fullerenols (effective concentrations, concentration ranges, DGT, and DOxT) were found to depend on the number of oxygen substituents. Lower toxicity and higher antioxidant activity were determined in solutions of fullerenols with fewer oxygen substituents (x+y = 24–28). The differences in fullerenol properties were attributed to their catalytic activity due to reversible electron acceptance, radical trapping, and balance of reactive oxygen species in aqueous solutions. The results provide pharmaceutical sciences with a basis for selection of carbon nanoparticles with appropriate toxic and antioxidant characteristics. Based on the results, we recommend, to reduce the toxicity of prospective endohedral gadolinium-fullerenol preparations Gd@C82Oy(OH)x, decreasing the number of oxygen groups to x+y = 24–28. The potential of bioluminescence methods to compare toxic and antioxidant characteristics of carbon nanostructures were demonstrated.
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Affiliation(s)
- Ekaterina S Kovel
- Institute of Biophysics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia.
- Institute of Physics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia.
| | - Anna S Sachkova
- National Research Tomsk Polytechnic University, 634050 Tomsk, Russia.
| | - Natalia G Vnukova
- Institute of Physics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia.
- Siberian Federal University, 660041 Krasnoyarsk, Russia.
| | - Grigoriy N Churilov
- Institute of Physics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia.
- Siberian Federal University, 660041 Krasnoyarsk, Russia.
| | - Elena M Knyazeva
- National Research Tomsk Polytechnic University, 634050 Tomsk, Russia.
| | - Nadezhda S Kudryasheva
- Institute of Biophysics SB RAS, FRC KSC SB RAS, 660036 Krasnoyarsk, Russia.
- Siberian Federal University, 660041 Krasnoyarsk, Russia.
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10
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Handheld Enzymatic Luminescent Biosensor for Rapid Detection of Heavy Metals in Water Samples. CHEMOSENSORS 2019. [DOI: 10.3390/chemosensors7010016] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Enzymatic luminescent systems are a promising tool for rapid detection of heavy metals ions for water quality assessment. Nevertheless, their widespread use is limited by the lack of test procedure automation and available sensitive handheld luminometers. Herein we describe integration of disposable microfluidic chips for bioluminescent enzyme-inhibition based assay with a handheld luminometer, which detection system is based on a thermally stabilized silicon photomultiplier (SiPM). Microfluidic chips were made of poly(methyl methacrylate) by micro-milling method and sealed using a solvent bonding technique. The composition of the bioluminescent system in microfluidic chip was optimized to achieve higher luminescence intensity and storage time. Results indicate that developed device provided comparable sensitivity with bench-scale PMT-based commercial luminometers. Limit of detection for copper (II) sulfate reached 2.5 mg/L for developed biosensor. Hereby we proved the concept of handheld enzymatic optical biosensors with disposable chips for bioassay. The proposed biosensor can be used as an early warning field-deployable system for rapid detection of heavy metals salts and other toxic chemicals, which affect bioluminescent signal of enzymatic reaction.
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Petrova AS, Lukonina AA, Dementyev DV, Ya Bolsunovsky A, Popov AV, Kudryasheva NS. Protein-based fluorescent bioassay for low-dose gamma radiation exposures. Anal Bioanal Chem 2018; 410:6837-6844. [PMID: 30062510 DOI: 10.1007/s00216-018-1282-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Revised: 07/10/2018] [Accepted: 07/17/2018] [Indexed: 01/30/2023]
Abstract
The study suggests an application of a coelenteramide-containing fluorescent protein (CLM-CFP) as a simplest bioassay for gamma radiation exposures. "Discharged obelin," a product of the bioluminescence reaction of the marine coelenterate Obelia longissima, was used as a representative of the CLM-CFP group. The bioassay is based on a simple enzymatic reaction-photochemical proton transfer in the coelenteramide-apoprotein complex. Components of this reaction differ in fluorescence color, providing, by this, an evaluation of the proton transfer efficiency in the photochemical process. This efficiency depends on the microenvironment of the coelenteramide within the protein complex, and, hence, can evaluate a destructive ability of gamma radiation. The CLM-CFP samples were exposed to gamma radiation (137Cs, 2 mGy/h) for 7 and 16 days at 20 °C and 5 °C, respectively. As a result, two fluorescence characteristics (overall fluorescence intensity and contributions of color components to the fluorescence spectra) were identified as bioassay parameters. Both parameters demonstrated high sensitivity of the CLM-CFP-based bioassay to the low-dose gamma radiation exposure (up to 100 mGy). Higher temperature (20 °C) enhanced the response of CLM-CFP to gamma radiation. This new bioassay can provide fluorescent multicolor assessment of protein destruction in cells and physiological liquids under exposure to low doses of gamma radiation. Graphical abstract ᅟ.
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Affiliation(s)
- Alena S Petrova
- Krasnoyarsk State Agrarian University, Mira Avenue 90, Krasnoyarsk, 660049, Russia
| | - Anna A Lukonina
- Siberian Federal University, Svobodnyy Ave 79, Krasnoyarsk, 660041, Russia
| | - Dmitry V Dementyev
- Institute of Biophysics SB RAS, FRC KSC SB RAS, Krasnoyarsk, 660036, Russia
| | | | - Anatoliy V Popov
- Department of Radiology, University of Pennsylvania, 3401 N Broad St., Philadelphia, PA, 19140, USA
| | - Nadezhda S Kudryasheva
- Siberian Federal University, Svobodnyy Ave 79, Krasnoyarsk, 660041, Russia. .,Institute of Biophysics SB RAS, FRC KSC SB RAS, Krasnoyarsk, 660036, Russia.
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Denisov I, Lukyanenko K, Yakimov A, Kukhtevich I, Esimbekova E, Belobrov P. Disposable luciferase-based microfluidic chip for rapid assay of water pollution. LUMINESCENCE 2018; 33:1054-1061. [DOI: 10.1002/bio.3508] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Revised: 04/22/2018] [Accepted: 04/30/2018] [Indexed: 12/16/2022]
Affiliation(s)
| | | | | | | | - Elena Esimbekova
- Siberian Federal University; Krasnoyarsk Russia
- Institute of Biophysics SB RAS Federal Research Center'Krasnoyarsk Science Center SB RAS’; Krasnoyarsk Russia
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13
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Bioluminescent enzyme inhibition-based assay to predict the potential toxicity of carbon nanomaterials. Toxicol In Vitro 2017; 45:128-133. [DOI: 10.1016/j.tiv.2017.08.022] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Revised: 08/28/2017] [Accepted: 08/31/2017] [Indexed: 01/02/2023]
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14
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Metal-enhanced luminescence: Current trend and future perspectives- A review. Anal Chim Acta 2017; 971:1-13. [DOI: 10.1016/j.aca.2017.03.051] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Revised: 03/22/2017] [Accepted: 03/23/2017] [Indexed: 01/06/2023]
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15
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Alieva RR, Kudryasheva NS. Variability of fluorescence spectra of coelenteramide-containing proteins as a basis for toxicity monitoring. Talanta 2017; 170:425-431. [PMID: 28501192 DOI: 10.1016/j.talanta.2017.04.043] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2017] [Revised: 04/10/2017] [Accepted: 04/16/2017] [Indexed: 11/30/2022]
Abstract
Nowadays, physicochemical approach to understanding toxic effects remains underdeveloped. A proper development of such mode would be concerned with simplest bioassay systems. Coelenteramide-Containing Fluorescent Proteins (CLM-CFPs) can serve as proper tools for study primary physicochemical processes in organisms under external exposures. CLM-CFPs are products of bioluminescent reactions of marine coelenterates. As opposed to Green Fluorescent Proteins, the CLM-CFPs are not widely applied in biomedical research, and their potential as colored biomarkers is undervalued now. Coelenteramide, fluorophore of CLM-CFPs, is a photochemically active molecule; it acts as a proton donor in its electron-excited states, generating several forms of different fluorescent state energy and, hence, different fluorescence color, from violet to green. Contributions of the forms to the visible fluorescence depend on the coelenteramide microenvironment in proteins. Hence, CLM-CFPs can serve as fluorescence biomarkers with color differentiation to monitor results of destructive biomolecule exposures. The paper reviews experimental and theoretical studies of spectral-luminescent and photochemical properties of CLM-CFPs, as well as their variation under different exposures - chemicals, temperature, and ionizing radiation. Application of CLM-CFPs as toxicity bioassays of a new type is justified.
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Affiliation(s)
- Roza R Alieva
- Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Akademgorodok 50/50, Krasnoyarsk 660036, Russia; Siberian Federal University, Svobodny Prospect 79, Krasnoyarsk 660041, Russia
| | - Nadezhda S Kudryasheva
- Institute of Biophysics SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Akademgorodok 50/50, Krasnoyarsk 660036, Russia; Siberian Federal University, Svobodny Prospect 79, Krasnoyarsk 660041, Russia
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16
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On mechanism of antioxidant effect of fullerenols. Biochem Biophys Rep 2016; 9:1-8. [PMID: 28955983 PMCID: PMC5614482 DOI: 10.1016/j.bbrep.2016.10.011] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2016] [Revised: 10/12/2016] [Accepted: 10/21/2016] [Indexed: 12/11/2022] Open
Abstract
Fullerenols are nanosized water-soluble polyhydroxylated derivatives of fullerenes, specific allotropic form of carbon, bioactive compounds and perspective pharmaceutical agents. Antioxidant activity of fullerenols was studied in model solutions of organic and inorganic toxicants of oxidative type - 1,4-benzoquinone and potassium ferricyanide. Two fullerenol preparations were tested: С60О2-4(ОН)20-24 and mixture of two types of fullerenols С60О2-4(ОН)20-24+С70О2-4(ОН)20-24. Bacteria-based and enzyme-based bioluminescent assays were used to evaluate a decrease in cellular and biochemical toxicities, respectively. Additionally, the enzyme-based assay was used for the direct monitoring of efficiency of the oxidative enzymatic processes. The bacteria-based and enzyme-based assays showed similar peculiarities of the detoxification processes: (1) ultralow concentrations of fullerenols were active (ca 10-17-10-4 and 10-17-10-5 g/L, respectively), (2) no monotonic dependence of detoxification efficiency on fullerenol concentrations was observed, and (3) detoxification of organic oxidizer solutions was more effective than that of the inorganic oxidizer. The antioxidant effect of highly diluted fullerenol solutions on bacterial cells was attributed to hormesis phenomenon; the detoxification was concerned with stimulation of adaptive cellular response under low-dose exposures. Sequence analysis of 16S ribosomal RNA was carried out; it did not reveal mutations in bacterial DNA. The suggestion was made that hydrophobic membrane-dependent processes are involved to the detoxifying mechanism. Catalytic activity of fullerenol (10-8 g/L) in NADH-dependent enzymatic reactions was demonstrated and supposed to contribute to adaptive bacterial response.
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Kudryasheva NS, Kovel ES, Sachkova AS, Vorobeva AA, Isakova VG, Churilov GN. Bioluminescent Enzymatic Assay as a Tool for Studying Antioxidant Activity and Toxicity of Bioactive Compounds. Photochem Photobiol 2016; 93:536-540. [PMID: 27645453 DOI: 10.1111/php.12639] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2016] [Accepted: 08/05/2016] [Indexed: 01/17/2023]
Abstract
A bioluminescent assay based on a system of coupled enzymatic reactions catalyzed by bacterial luciferase and NADH:FMN-oxidoreductase was developed to monitor toxicity and antioxidant activity of bioactive compounds. The assay enables studying toxic effects at the level of biomolecules and physicochemical processes, as well as determining the toxicity of general and oxidative types. Toxic and detoxifying effects of bioactive compounds were studied. Fullerenols, perspective pharmaceutical agents, nanosized particles, water-soluble polyhydroxylated fullerene-60 derivatives were chosen as bioactive compounds. Two homologous fullerenols with different number and type of substituents, C60 O2-4 (OH)20-24 and Fe0.5 C60 (OH) x Oy (x + y = 40-42), were used. They suppressed bioluminescent intensity at concentrations >0.01 g L-1 and >0.001 g L-1 for C60 O2-4 (OH)20-24 and Fe0.5 C60 (OH)x Oy , respectively; hence, a lower toxicity of C60 O2-4 (OH)20-24 was demonstrated. Antioxidant activity of fullerenols was studied in model solutions of organic and inorganic oxidizers; changes in toxicities of general and oxidative type were determined; detoxification coefficients were calculated. Fullerenol C60 O2-4 (OH)20-24 revealed higher antioxidant ability at concentrations 10-17 -10-5 g L-1 . The difference in the toxicity and antioxidant activity of fullerenols was explained through their electron donor/acceptor properties and different catalytic activity. Principles of bioluminescent enzyme assay application for evaluating the toxic effect and antioxidant activity of bioactive compounds were summarized and the procedure steps were described.
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Affiliation(s)
- Nadezhda S Kudryasheva
- Institute of Biophysics SB RAS, Krasnoyarsk, Russia.,Siberian Federal University, Krasnoyarsk, Russia
| | - Ekaterina S Kovel
- Institute of Biophysics SB RAS, Krasnoyarsk, Russia.,Siberian Federal University, Krasnoyarsk, Russia
| | - Anna S Sachkova
- National Research Tomsk Polytechnic University, Tomsk, Russia
| | - Anna A Vorobeva
- National Research Tomsk Polytechnic University, Tomsk, Russia
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18
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Esimbekova EN, Lonshakova-Mukina VI, Bezrukikh AE, Kratasyuk VA. Design of multicomponent reagents for enzymatic assays. DOKL BIOCHEM BIOPHYS 2015; 461:102-5. [PMID: 25937225 DOI: 10.1134/s1607672915020106] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2014] [Indexed: 11/23/2022]
Affiliation(s)
- E N Esimbekova
- Institute of Biophysics, Siberian Branch, Russian Academy of Sciences, Akademgorodok, Krasnoyarsk, 660036, Russia,
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19
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Kudryasheva NS, Rozhko TV. Effect of low-dose ionizing radiation on luminous marine bacteria: radiation hormesis and toxicity. JOURNAL OF ENVIRONMENTAL RADIOACTIVITY 2015; 142:68-77. [PMID: 25644753 DOI: 10.1016/j.jenvrad.2015.01.012] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Revised: 01/12/2015] [Accepted: 01/12/2015] [Indexed: 06/04/2023]
Abstract
The paper summarizes studies of effects of alpha- and beta-emitting radionuclides (americium-241, uranium-235+238, and tritium) on marine microorganisms under conditions of chronic low-dose irradiation in aqueous media. Luminous marine bacteria were chosen as an example of these microorganisms; bioluminescent intensity was used as a tested physiological parameter. Non-linear dose-effect dependence was demonstrated. Three successive stages in the bioluminescent response to americium-241 and tritium were found: 1--absence of effects (stress recognition), 2--activation (adaptive response), and 3--inhibition (suppression of physiological function, i.e. radiation toxicity). The effects were attributed to radiation hormesis phenomenon. Biological role of reactive oxygen species, secondary products of the radioactive decay, is discussed. The study suggests an approach to evaluation of non-toxic and toxic stages under conditions of chronic radioactive exposure.
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Affiliation(s)
- N S Kudryasheva
- Institute of Biophysics SB RAS, Akademgorodok 50, 660036, Krasnoyarsk, Russia; Siberian Federal University, Svobodny 79, 660041, Krasnoyarsk, Russia.
| | - T V Rozhko
- Siberian Federal University, Svobodny 79, 660041, Krasnoyarsk, Russia; Krasnoyarsk State Medical Academy, P. Zheleznyaka 1, 660022, Krasnoyarsk, Russia
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20
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Tarasova AS, Stom DI, Kudryasheva NS. Antioxidant activity of humic substances via bioluminescent monitoring in vitro. ENVIRONMENTAL MONITORING AND ASSESSMENT 2015; 187:89. [PMID: 25663400 DOI: 10.1007/s10661-015-4304-1] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2014] [Accepted: 01/13/2015] [Indexed: 06/04/2023]
Abstract
UNLABELLED This work considers antioxidant properties of natural detoxifying agents-humic substances (HS) in solutions of model inorganic and organic compounds of oxidative nature-complex salt K3[Fe(СN)6] and 1,4-benzoquinone. Bioluminescent system of coupled enzymatic reactions catalyzed by NAD(P)H FMN-oxidoreductase and bacterial luciferase was used as a bioassay in vitro to monitor toxicity of the oxidizer solutions. Toxicities of general and oxidative types were evaluated using bioluminescent kinetic parameters-bioluminescence intensity and induction period, respectively. Antioxidant activity of HS was attributed to their ability to decrease both general and oxidative toxicities; the HS antioxidant efficiency was characterized with detoxification coefficients D GT and D OxT, respectively. Dependencies of D GT and D OxT on HS concentration and time of preliminary incubation of the oxidizers with HS were demonstrated. The optimal conditions for detoxification of the oxidizers were >20-min incubation time and 0.5 × 10(-4) to 2 × 10(-4) M of HS concentration. The present study promotes application of the enzymatic luminescent bioassay to monitor toxicity of pollutants of oxidative nature in environmental and waste waters in remediation procedures.
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Affiliation(s)
- A S Tarasova
- Siberian Federal University, Krasnoyarsk, Russia, 660041,
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21
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Kudryasheva NS, Tarasova AS. Pollutant toxicity and detoxification by humic substances: mechanisms and quantitative assessment via luminescent biomonitoring. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2015; 22:155-167. [PMID: 25146119 DOI: 10.1007/s11356-014-3459-6] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2014] [Accepted: 08/14/2014] [Indexed: 06/03/2023]
Abstract
The paper considers mechanisms of detoxification of pollutant solutions by water-soluble humic substances (HSs), natural detoxifying agents. The problems and perspectives of bioassay application for toxicity monitoring of complex solutions are discussed from ecological point of view. Bioluminescence assays based on marine bacteria and their enzymes are of special attention here; they were shown to be convenient tools to study the detoxifying effects on cellular and biochemical levels. The advantages of bioluminescent enzymatic assay for monitoring both integral and oxidative toxicities in complex solutions of model pollutants and HS were demonstrated. The efficiencies of detoxification of the solutions of organic oxidizers and salts of metals (including radioactive ones) by HS were analyzed. The dependencies of detoxification efficiency on time of exposure to HS and HS concentrations were demonstrated. Antioxidant properties of HS were considered in detail. The detoxifying effects of HS were shown to be complex and regarded as 'external' (binding and redox processes in solutions outside the organisms) and/or 'internal' organismal processes. The paper demonstrates that the HS can stimulate a protective response of bacterial cells as a result of (1) changes of rates of biochemical reactions and (2) stabilization of mucous layers outside the cell walls. Acceleration of auto-oxidation of NADH, endogenous reducer, by HS was suggested as a reason for toxicity increase in the presence of HS due to abatement of reduction ability of intracellular media.
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Affiliation(s)
- N S Kudryasheva
- Institute of Biophysics SB RAS, Krasnoyarsk, Russia, 660036,
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22
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Zhang J, Liu SS. Time-dependent stimulations of 1-alkyl-3-methylimidazolium chloride on redox reactants and antioxidases in Vibrio qinghaiensis sp.-Q67. JOURNAL OF HAZARDOUS MATERIALS 2014; 283:568-573. [PMID: 25464297 DOI: 10.1016/j.jhazmat.2014.09.059] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Revised: 08/20/2014] [Accepted: 09/19/2014] [Indexed: 06/04/2023]
Abstract
Previously, 1-alkyl-3-methylimidazolium chloride ([Cnmim]Cl) showed time-dependent hormesis on Vibrio qinghaiensis sp.-Q67 (Q67). Yet, the underlying mechanism remained unexplored. Currently, the biochemical effects of [Cnmim]Cl in Q67 were studied by ELISA kits. [C2mim]Cl firstly inhibited (0.25h) and then stimulated flavin mononucleotide (FMN), nicotinamide adenine dinucleotide (NADH), superoxide dismutase (SOD) and catalase (CAT). The stimulations of [C2mim]Cl firstly increased (from 2 to 8h) and then decreased (from 8 to 12h). Positive correlations among FMN, NADH and luminescence indicated the essential role of NADH:FMN reaction in the light production system, and those among SOD, CAT and luminescence indicated a time-dependent generation of reactive oxygen species (ROS). Notably, the maximum stimulations of [C2mim]Cl on FMN and NADH were at 4h, and the stimulations were 184% and 186% higher than the control, respectively, earlier and stronger than those on luminescence. The FMN/NADH ratios were 3.7 at 0.25h and decreased to 1.15 at 12h, without a concentration-dependence. The maximum stimulations of [C4mim]Cl were at 8h and the stimulations were 48.8% and 47.9% higher than the control for FMN and NADH, respectively. Meanwhile, the inductions of [C4mim]Cl on SOD and CAT continuously increased from 2 to 12h. Thus, [C4mim]Cl showed lower stimulation levels and different time-dependences. [Cnmim]Cl (n=6, 8, 12) did not show significant biochemical effects. Therefore, the biochemical effects of [Cnmim]Cl depended on both time and side chain. Our findings demonstrated a common pattern, FMN/NADH stimulations and antioxidant inductions, in the hormesis of ILs, and also called for future mechanisms studies.
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Affiliation(s)
- Jing Zhang
- College of Biological, Chemical Sciences and Engineering, Jiaxing University, Jiaxing 314001, Zhejiang, PR China; State Key Laboratory of Pollution Control and Resource Reuse, Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China
| | - Shu-Shen Liu
- State Key Laboratory of Pollution Control and Resource Reuse, Key Laboratory of Yangtze River Water Environment, Ministry of Education, College of Environmental Science and Engineering, Tongji University, Shanghai 200092, PR China.
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Application of enzyme bioluminescence in ecology. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2014; 144:67-109. [PMID: 25084995 DOI: 10.1007/978-3-662-43385-0_3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
: This review examines the general principles of bioluminescent enzymatic toxicity bioassays and describes the applications of these methods and the implementation in commercial biosensors. Bioluminescent enzyme system technology (BEST) has been proposed in the bacterial coupled enzyme system, wherein NADH:FMN-oxidoreductase-luciferase substitutes for living organisms. BEST was introduced to facilitate and accelerate the development of cost-competitive enzymatic systems for use in biosensors for medical, environmental, and industrial applications. For widespread use of BEST, the multicomponent reagent "Enzymolum" has been developed, which contains the bacterial luciferase, NADH:FMN-oxidoreductase, and their substrates, co-immobilized in starch or gelatin gel. Enzymolum is the central part of Portable Laboratory for Toxicity Detection (PLTD), which consists of a biodetector module, a sampling module, a sample preparation module, and a reagent module. PLTD instantly signals chemical-biological hazards and allows us to detect a wide range of toxic substances. Enzymolum can be integrated as a biological module into the portable biodetector-biosensor originally constructed for personal use. Based on the example of Enzymolum and the algorithm for creating new enzyme biotests with tailored characteristics, a new approach was demonstrated in biotechnological design and construction. The examples of biotechnological design of various bioluminescent methods for ecological monitoring were provided. Possible applications of enzyme bioassays are seen in the examples for medical diagnostics, assessment of the effect of physical load on sportsmen, analysis of food additives, and in practical courses for higher educational institutions and schools. The advantages of enzymatic assays are their rapidity (the period of time required does not exceed 3-5 min), high sensitivity, simplicity and safety of procedure, and possibility of automation of ecological monitoring; the required luminometer is easily available.
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