Meiobenthos and free-living nematodes as tools for biomonitoring environments affected by riverine impact

Nematode community structures in the presence of wastewater treatment plant discharge

Wastewater treatment plants (WWTPs) represent major point sources of pollution in coastal systems, affecting benthic ecosystems. In the present study, we assessed the potential role that WWTPs have in shaping nematode communities and established baseline knowledge of free-living nematode community structures in St. Andrew Bay, Florida. Sediment samples were collected from four sites representing areas of WWTP outflow and areas with no apparent outflow, during the winter and summer. Nematode communities across sites were significantly different, and the differences were strongly associated with the distance to the nearest WWTP. While the communities were not different along transects at each site, nor across seasons, community dissimilarity across sites was high, implying strong contrasts throughout the bay system. Dominance of tolerant, opportunistic genera and Ecological Quality Status assessments suggest that the system is stressed by organic enrichment, possibly linked to the WWTPs. Our results suggest that knowledge on the life-history of dominant genera is imperative to assess the ecological quality of a benthic system, in addition to taxonomic and functional metrics. Considering the value of marine nematodes as bioindicators, more work should be done to monitor temporal variability in nematode communities in this system as future infrastructure changes alter its dynamics.

Multi-benthic size approach to unveil different environmental conditions in a Mediterranean harbor area (Ancona, Adriatic Sea, Italy)

Harbors are hubs of human activity and are subject to the continuous discharge and release of industrial, agricultural, and municipal waste and contaminants. Benthic organisms are largely known to reflect environmental conditions they live in. Despite meio- and macrofauna interacting within the benthic system, they are ecologically distinct components of the benthos and as such may not necessarily respond to environmental conditions and/or disturbances in the same way. However, in a few field studies the spatial patterns of meio- and macrofauna have been simultaneously compared. In the present study, we assess the response and patterns in the abundance, diversity, and distribution of the two benthic size classes to the different environmental conditions they live in (i.e., sediment concentrations of selected trace metals and polycyclic aromatic hydrocarbons (PAHs); organic matter contents and grain size) characterizing the Ancona Harbor (Adriatic Sea). Meio- and macrofauna provided partially similar types of information depending on the indices used (univariate measures or community structure/species composition) and the different 'response-to-stress'. The community structure (i.e., taxa composition) of both benthic size components clearly showed differences among sampling stations located from inside to outside the harbor, reflecting the marked environmental heterogeneity and disturbance typically characterizing these systems. Notwithstanding, the univariate measures (i.e., meio- and macrofauna total abundance, diversity indices and equitability) didn't show similar spatial patterns. Meiofauna were likely to be more sensitive to the effects of environmental features and contaminants than macrofauna. Overall, trace metals and PAHs affected the community composition of the two benthic components, but only the meiofauna abundance and diversity were related to the environmental variables considered (i.e., quantity and quality of organic matter). Our results pinpoint the importance of studying both meio- and macrofauna communities, which could provide greater insight into the processes affecting the investigated area and reveal different aspects of the benthic ecosystems in response to harbor conditions.

Free-living nematodes of Mediterranean ports: A mandatory contribution for their use in ecological quality assessment

Free-living nematodes were investigated in three Mediterranean commercial ports (Ancona and Trieste, Italy; Koper, Slovenia) in terms of abundance, diversity and functionality. Results indicated that r-strategist genera were dominant in all ports and that a more diverse assemblage characterized Trieste, despite the high contamination levels, suggesting a potential adaptation to long-standing contamination. The main environmental factor that shaped the assemblage in all ports were Total Polycyclic Aromatic Hydrocarbons, while Total Organic Carbon and the grain-size were less relevant. A co-occurrence analysis was applied for identifying which genera cohesively respond to site-specific environmental conditions in order to recalibrate and implement the sets of bioindicator genera in relation to their different opportunistic behaviour. Finally, we provided some suggestions for a proper application of the nematode indices (Maturity Index, Index of Trophic Diversity, Shannon diversity) in order to encourage the use of free-living nematodes for the environmental quality assessment of commercial ports.

Free-living marine nematodes community structure in the conservation area (Chaojing Park) and its adjacent area of Keelung, Taiwan

Studies conducted in the same seas or even study sites nearby each other, showed very different community structure, implying the patchiness of free-living marine nematodes which may be related to the sedimentary environment such as sediment type and food availability of the study area. This study was motivated by the concerns about the impacts of high level of anthropogenic activities on Chaojing Park (gazetted as Wanghaixiang’s Chao-Jing Bay Resource Conservation Area (WCJBRA) in 2016). The present study provides baseline knowledge of free-living marine nematode community structure in WCJBRA and identify potential marine nematodes as bioindicators to indicate possible impacts of the anthropogenic activities to the Chaojing Park. A total of 15 stations were selected in the subtidal zones of WCJBRA and its adjacent area. Marine nematode sample collection was carried out on the 13th and 14th of September 2019 using SCUBA diving technique. Results showed positive correlation between nematode density and medium sand (500μm-1.0mm). Presence of certain species such as Daptonema sp., Pomponema sp. and Innocuonema sp. indicates presence of disturbances in S12 and S13. Several species also showed potential to be introduced as indicator for healthy environment subjected to further studies on nematode-pollutants relationship, particularly on autecology as per se. Higher species diversity, H’ index of S1-S8 and S11 was categorised as Good Condition; followed by station with moderate species diversity index (S9, S10, S14 –Moderate Condition) zone; and lastly S12, S13 and S15 (Poor Condition).

Simple Is the Best: An Alternative Method for the Analysis of Free-Living Nematode Assemblage Structure

An alternative approach to notice changes of the nematode community structure was evaluated in five study cases in the Mediterranean Sea. In detail, we suggested a combination of morpho-functional traits (i.e., amphid, cuticle, buccal cavity, and tail shape) as an alternative to the taxonomic identification of nematodes. The results clearly demonstrated that the matrixes made using the trait code numbers perfectly mirror the changes of the nematode community structure at the genus level. The combination of the morpho-functional traits more frequently observed in areas under human pressure were ascribable to genera belonging to Xyalidae, Linhomoeidae and Chromadoridae families. This approach might greatly speed the analyses of nematode fauna in biomonitoring programs and might also be adopted for other meiobenthic organisms that may be categorized in functional groups opening new perspectives in the ecological assessment of meiofauna.

Environmental drivers of meiofaunal natural variability, Egypt, Southeastern Mediterranean

Sandy beaches are challenging ecosystems, in which biota experience extreme physical conditions. We sampled meiofauna in conjunction with environmental factors that are well-known to affect faunal associations to describe the ecological state of sandy beaches that experience natural and human-made disturbances. We applied a random stratified sampling design with monthly collections (1800 cores) at three beaches on the Alexandria, Egypt, coast during two sampling periods over 1 year from November to April and May to September. We used multivariate analyses to compare beaches for water quality, particle size, and meiofaunal assemblages. The environmental analysis explained 60% of the total variation of physical factors among beaches and grouped beaches that moderately sorted fine-grained sand and high water salinity vs. the beach with well-sorted, coarse-grain, and low salinity. Meiofaunal analyses revealed unexpected results. The abundance and temporal variation were low, and the explained proportion of natural variation by the putative environmental factors was small. The natural variation was an indicator of long-term beach ruin and oligotrophic conditions. Our results suggest that a large fraction of natural variation in beach meiofauna is stochastic or that other, non-measured, the natural forces (e.g., storm events) or human-made forces (e.g., tourism activities) are essential contributors to variation. Our best models indicate that meiofauna is more resilient to natural disturbances than to human-made stressors, and the higher the beach exposure to the synergetic effects of natural forces and anthropogenic stressors, the lower the ecological state is.

Meiobenthic nematodes in the assessment of the relative impact of human activities on coastal marine ecosystem

Ecological quality (EcoQ) status of the Southwest and West coasts of South Korea was evaluated within the "National Investigation of Marine Ecosystems in Korea" in the 2015. In particular, the study dealt to assess the ecological quality of the sediments using free-living nematode communities. A total of 149 species were found in the study area, and Daptonema, Sabatieria, Parodontophora, Sphaerolaimus, and Viscosia were found as dominant genera. Statistical analysis of both environmental and faunal parameters showed an increasing human pressure from Western to Southern coasts. The community structure changed with the environmental features of the study area and allowed the detection of a suite of possible nematode indicators that might be used in monitoring studies. In particular, Dorylaimopsis spp. appeared heavy metal and organic matter resistant taxa, Sabatieria an eutrophication resistant genus, while Paracanthonchus and Neotonchus as heavy metal and organic matter sensitive genera. The principal component analysis (PCA) results showed a clear negative correlation between maturity index and both heavy metal and organic matter increasing, while diversity indices did not appear to be significantly influenced by them. Appling the thresholds of the synthetic nematode indices, the EcoQ of the study area was assessed as poor to moderate.

Meiofaunal communities in four Adriatic ports: Baseline data for risk assessment in ballast water management

Ports receive a variety of contaminants related to a wide range of anthropogenic activities - including ship ballast water (BW) - that ultimately find their way to sediments. Benthic meiofauna from four Adriatic ports (Ancona, Trieste, Koper, and Split) was assessed for the main environmental pollutants, to evaluate the effects of human activities on meiobenthos and identify the most appropriate descriptor to assess the ecological quality of marine ecosystems. Sediment analysis demonstrated that Trieste and Split were the most contaminated ports, followed by Koper and Ancona. All meiofaunal parameters showed high spatial and temporal variability, in line with the marked heterogeneity of the four ports. Sand, total organic carbon, and pollutants seemed to be the variables that best explained meiofaunal patterns. Community structure and rare taxa were the meiofaunal descriptors that reflected the environmental status and biological response most accurately. The present data suggest that meiofauna can be used to assess the biological impact of BW.

Spatio-temporal distribution of meiofaunal assemblages and its relationship with environmental factors in a semi-enclosed bay

In order to reveal the spatio-temporal distribution of meiofaunal assemblages and its relationship with environmental factors in semi-enclosed bay habitats, meiofaunal and sediment samples were collected in February (winter), May (spring), August (summer) and November (autumn) 2014 in Jiaozhou Bay, China. A total of 20 meiofaunal taxa were identified. The most dominant group was free-living marine nematode, followed by benthic copepod. During the four sampling seasons, the values of meiofaunal average abundance were (912.3 ± 603.1), (1576.4 ± 659.5), (1074.6 ± 417.6), (2152.4 ± 1062.3) ind./10 cm² while those of biomass were (575.0 ± 398.5), (874.3 ± 518.4), (617.9 ± 337.8), (1203.6 ± 719.6) μg dwt/10 cm², respectively. In terms of vertical distribution, meiofauna were mainly found in the (0-2) cm sediment layer (59.92%), followed by (2-5) cm layer (28.25%) and (5-8) cm layer (11.82%). Results of correlation analysis showed that bottom water temperature was the main factor influencing meiofaunal distribution and food source (sediment organic matter content) was the main factor influencing meiofaunal assemblages.

Ecostructuring of marine nematode communities by submarine groundwater discharge

Inputs of submarine groundwater discharge (SGD) to the coastal ocean may alter local and regional-scale biology. Here, we report on nematode assemblages along the north shore of Long Island, NY. We test if nematode communities differed between sites impacted by mixed fresh-saline SGD and where SGD is exclusively saline. Diversity of nematodes was low at sites impacted by fresh SGD and communities were dominated by a few opportunistic genera. Moreover, a set of typical freshwater nematode genera restricted to impacted sites was observed. Their presence in the marine coastal zone is exceptional and underlines the structuring role that fresh SGD plays in the local ecosystem. Saline SGD structured nematode assemblages differently compared to sites impacted by fresh SGD. The number of nematode genera was markedly higher at saline SGD sites, with a different community structure. This study highlights the importance to which inputs of fresh SGD may have on local ecosystem diversity in marine coastal environments.

Cross shelf benthic biodiversity patterns in the Southern Red Sea

The diversity of coral reef and soft sediment ecosystems in the Red Sea has to date received limited scientific attention. This study investigates changes in the community composition of both reef and macrobenthic communities along a cross shelf gradient. Coral reef assemblages differed significantly in species composition and structure with location and depth. Inner shelf reefs harbored less abundant and less diverse coral assemblages with higher percentage macroalgae cover. Nutrient availability and distance from the shoreline were significantly related to changes in coral composition and structure. This study also observed a clear inshore offshore pattern for soft sediment communities. In contrast to the coral reef patterns the highest diversity and abundance of soft sediment communities were recorded at the inshore sites, which were characterized by a higher number of opportunistic polychaete species and bivalves indicative of mild disturbance. Sediment grain size and nutrient enrichment were important variables explaining the variability. This study aims to contribute to our understanding of ecosystem processes and biodiversity in the Red Sea region in an area that also has the potential to provide insight into pressing topics, such as the capacity of reef systems and benthic macrofaunal organisms to adapt to global climate change.

Nematode morphometry and biomass in the Saigon River harbours in relation to antifouling contaminants

Morphometry and biomass of nematode communities in different harbours of the Saigon River were investigated in the dry and wet seasons in relation to environmental variables such as total organic carbon, pH, conductivity, salinity and oxygen redox potential, in addition to concentrations of different butyltin compounds. The results indicated that nematodes in contaminated sediments from the Saigon River harbours were mainly characterised by slender morphotypes, whilst very few thin and stout nematodes were observed. Individual nematode biomass was generally low, especially in the wet season. There was no significant correlation between butyltin compounds and nematode morphometrics in the dry season but significant correlations were found for the wet season. Although significant correlations were observed for the wet season, the strong seasonal differences in nematode biomass spectra suggest a potential limitation in their use for environmental monitoring.

Characterization of Macroinvertebrate Communities in the Hyporheic Zone of River Ecosystems Reflects the Pump-Sampling Technique Used

The hyporheic zone of river ecosystems provides a habitat for a diverse macroinvertebrate community that makes a vital contribution to ecosystem functioning and biodiversity. However, effective methods for sampling this community have proved difficult to establish, due to the inaccessibility of subsurface sediments. The aim of this study was to compare the two most common semi-quantitative macroinvertebrate pump-sampling techniques: Bou-Rouch and vacuum-pump sampling. We used both techniques to collect replicate samples in three contrasting temperate-zone streams, in each of two biogeographical regions (Atlantic region, central England, UK; Continental region, southeast France). Results were typically consistent across streams in both regions: Bou-Rouch samples provided significantly higher estimates of taxa richness, macroinvertebrate abundance, and the abundance of all UK and eight of 10 French common taxa. Seven and nine taxa which were rare in Bou-Rouch samples were absent from vacuum-pump samples in the UK and France, respectively; no taxon was repeatedly sampled exclusively by the vacuum pump. Rarefaction curves (rescaled to the number of incidences) and non-parametric richness estimators indicated no significant difference in richness between techniques, highlighting the capture of more individuals as crucial to Bou-Rouch sampling performance. Compared to assemblages in replicate vacuum-pump samples, multivariate analyses indicated greater distinction among Bou-Rouch assemblages from different streams, as well as significantly greater consistency in assemblage composition among replicate Bou-Rouch samples collected in one stream. We recommend Bou-Rouch sampling for most study types, including rapid biomonitoring surveys and studies requiring acquisition of comprehensive taxon lists that include rare taxa. Despite collecting fewer macroinvertebrates, vacuum-pump sampling remains an important option for inexpensive and rapid sample collection.

Biodiversity loss and turnover in alternative states in the Mediterranean Sea: a case study on meiofauna

In the Mediterranean Sea hard-bottom macroalgal meadows may switch to alternative and less-productive barrens grounds, as a result of sea urchins overgrazing. Meiofauna (and especially nematodes) represent key components of benthic ecosystems, are highly-diversified, sensitive to environmental change and anthropogenic impacts, but, so-far, have been neglected in studies on regime shifts. We report here that sedimentary organic matter contents, meiofaunal taxa richness and community composition, nematode α- and β-biodiversity vary significantly between alternative macroalgal and barren states. The observed differences are consistent in six areas spread across the Mediterranean Sea, irrespective of barren extent. Our results suggest also that the low biodiversity levels in barren states are the result of habitat loss/fragmentation, which is associated also with a lower availability of trophic resources. Furthermore, differences in meiofaunal and nematode abundance, biomass and diversity between macroalgal meadow and barren states persist when the latter is not fully formed, or consists of patches interspersed in macroalgal meadows. Since barren grounds are expanding rapidly along the Mediterranean Sea and meiofauna are a key trophic component in marine ecosystems, we suggest that the extension and persistence of barrens at the expenses of macroalgal meadows could also affect resilience of higher trophic level.

Trophic restructuring (Wieser 1953) of free-living nematode in marine sediment experimentally enriched to increasing doses of pharmaceutical penicillin G

Trophic structure of free living nematode from Bizerte lagoon was tested by a microcosmic study after 30 days of exposure with 5 increasing doses of pharmaceutical penicillin G (D1: 3 mg L(-1), D2: 30 mg L(-1), D3: 300 mg L(-1), D4: 600 mg L(-1), D5: 700 mg L(-1)). Results showed significant differences between nematode assemblages from undisturbed controls and those from penicillin G treatments. Selective deposit-feeders (1A) or nonselective deposit-feeders (1B), very abundant in the control microcosm, were significantly affected and their dominance declined significantly. Epistrate feeders (2A) were significantly gradual increase for all microcosms treated with penicillin G, appeared to be more tolerant to the antibiotic and to take advantage of the growing scarcity of other trophic groups. Compared to the control microcosms, omnivorous-carnivorous (2B) was found to be higher in all treated microcosms, with the exception of those treated with D5. Trophic index (Σθ(2)) was significantly reduced in all microcosms treated whereas trophic ratio 1B/2A appears to be insignificant.

Trophic status and meiofauna biodiversity in the Northern Adriatic Sea: Insights for the assessment of good environmental status

The Descriptor 5 (Eutrophication) of the EU Marine Strategy Framework Directive aims at preventing the negative effects of eutrophication. However, in coastal systems all indicators based on water column parameters fail in identifying the trophic status and its effects on biodiversity and ecosystem functioning. We investigated benthic trophic status, in terms of sedimentary organic matter quantity, composition and quality, along with meiofaunal abundance, richness of taxa and community composition in three coastal sites (N Adriatic Sea) affected by different levels of anthropogenic stressors. We show that, on the basis of organic matter quantity and composition, the investigated areas can be classified from oligo-to mesotrophic, whereas using meiofauna as a descriptor, their environmental quality ranged from sufficient to moderately impacted. Our results show that the benthic trophic status based on organic matter variables, is not sufficient to provide a sound assessment of the environmental quality in marine coastal ecosystems. However, data reported here indicate that the integration of the meiofaunal variable allows providing robust assessments of the marine environmental status.

Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing

Biodiversity metrics are critical for assessment and monitoring of ecosystems threatened by anthropogenic stressors. Existing sorting and identification methods are too expensive and labour-intensive to be scaled up to meet management needs. Alternately, a high-throughput DNA sequencing approach could be used to determine biodiversity metrics from bulk environmental samples collected as part of a large-scale biomonitoring program. Here we show that both morphological and DNA sequence-based analyses are suitable for recovery of individual taxonomic richness, estimation of proportional abundance, and calculation of biodiversity metrics using a set of 24 benthic samples collected in the Peace-Athabasca Delta region of Canada. The high-throughput sequencing approach was able to recover all metrics with a higher degree of taxonomic resolution than morphological analysis. The reduced cost and increased capacity of DNA sequence-based approaches will finally allow environmental monitoring programs to operate at the geographical and temporal scale required by industrial and regulatory end-users.

Effects of increasing levels of pharmaceutical penicillin G contamination on structure of free living nematode communities in experimental microcosms

A microcosm experiment was conducted to examine the effects of the pharmaceutical (penicillin G) on free living nematode communities of a Tunisian coastal zone (South-Western Mediterranean Sea). Sediments were contaminated with five penicillin G dose [D1 (3 mgL(-1)), D2 (30 mgL(-1)), D3 (300 mgL(-1)), D4 (600 mgL(-1)), D5 (700 mgL(-1))], and effects were examined after 30 days. Results showed significant differences between nematode assemblages from undisturbed controls and those from penicillin G treatments. Most univariate measures, including diversity (H'), species richness (d), equitability (J) and number of species (S) decreased significantly with increasing level of the antibiotic contamination. Results from multivariate analyses of the species abundance data demonstrated that responses of nematode species to the penicillin treatments were varied: Kraspedonema octogoniata and Paracomesoma dubium were eliminated at all the antibiotic doses tested and seemed to be intolerant species to penicillin G contamination; Oncholaimus campylocercoides although survived even the highest dose D5, showed definite reduction in its abundance and may be classified as "opportunistic" species at this dose, whereas, Nannolaimoides decoratus which showed a positive response with an increase in density even at highest concentration of contaminant, seems to be "penicillin G resistant" species.