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Patange S, Ball DA, Wan Y, Karpova TS, Girvan M, Levens D, Larson DR. MYC amplifies gene expression through global changes in transcription factor dynamics. Cell Rep 2022; 38:110292. [PMID: 35081348 DOI: 10.1016/j.celrep.2021.110292] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Revised: 10/16/2021] [Accepted: 12/30/2021] [Indexed: 12/14/2022] Open
Abstract
The MYC oncogene has been studied for decades, yet there is still intense debate over how this transcription factor controls gene expression. Here, we seek to answer these questions with an in vivo readout of discrete events of gene expression in single cells. We engineered an optogenetic variant of MYC (Pi-MYC) and combined this tool with single-molecule RNA and protein imaging techniques to investigate the role of MYC in modulating transcriptional bursting and transcription factor binding dynamics in human cells. We find that the immediate consequence of MYC overexpression is an increase in the duration rather than in the frequency of bursts, a functional role that is different from the majority of human transcription factors. We further propose that the mechanism by which MYC exerts global effects on the active period of genes is by altering the binding dynamics of transcription factors involved in RNA polymerase II complex assembly and productive elongation.
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Affiliation(s)
- Simona Patange
- Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA; Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742, USA
| | - David A Ball
- Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA
| | - Yihan Wan
- Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA
| | - Tatiana S Karpova
- Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA
| | - Michelle Girvan
- Institute for Physical Science and Technology, University of Maryland, College Park, MD 20742, USA
| | - David Levens
- Laboratory of Pathology, National Cancer Institute, NIH, Bethesda, MD 20892, USA
| | - Daniel R Larson
- Laboratory of Receptor Biology and Gene Expression, National Cancer Institute, NIH, Bethesda, MD 20892, USA.
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2
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Kim KN, Jo YC, Huang ZJ, Song HS, Ryu KH, Huang QY, Lei CL. Influence of green light illumination at night on biological characteristics of the oriental armyworm, Mythimna separata (Lepidoptera: Noctuidae). BULLETIN OF ENTOMOLOGICAL RESEARCH 2020; 110:136-143. [PMID: 31203829 DOI: 10.1017/s0007485319000397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
The oriental armyworm, Mythimna separata is an important crop pest in eastern Asia. Nocturnal insects, including nocturnal moths, have phototactic behavior to an artificial light source. Phototactic behavior in insects is species-specific in response to different wavelengths of light sources. Our previous study showed that green (520 nm) light emitting diode (LED) light resulted in a significantly higher phototactic behavior in M. separata moths compared to the other wavelength LED lights. The goal of the present study is to investigate the influence of green light illumination on biological characteristics of different developmental stages in M. separata. Our results revealed that when different developmental stages of M. separata were exposed to the green light illumination in a dark period, several biological characteristics in all developmental stages except for egg stage were positively changed, but those of F1 generation M. separata which are next generation of the adults exposed to the green light did not significantly change compared with the control level. These findings suggest that green light illumination at night (or dark period) has a positive effect on the development and longevity of M. separata.
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Affiliation(s)
- K-N Kim
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
- Institute for Biodiversity, State Academy of Sciences, Pyongyang, Democratic People's Republic of Korea
| | - Y-C Jo
- Institute of Zoology, State Academy of Sciences, Pyongyang, Democratic People's Republic of Korea
| | - Z-J Huang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Hye-Seng Song
- Institute for Biodiversity, State Academy of Sciences, Pyongyang, Democratic People's Republic of Korea
| | - K-H Ryu
- Institute for Biodiversity, State Academy of Sciences, Pyongyang, Democratic People's Republic of Korea
| | - Q-Y Huang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
| | - C-L Lei
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
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Chernov AS, Reshetnikov DA, Ristsov GK, Kovalitskaya YA, Ermakov AM, Manokhin AA, Simakin AV, Vasilov RG, Gudkov SV. Influence of electromagnetic waves, with maxima in the green or red range, on the morphofunctional properties of multipotent stem cells. J Biol Phys 2019; 45:317-334. [PMID: 31595390 PMCID: PMC6917679 DOI: 10.1007/s10867-019-09531-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2019] [Accepted: 08/27/2019] [Indexed: 12/16/2022] Open
Abstract
This paper examines the effect of electromagnetic waves, with maxima in the green or red regions of the spectrum, on the morphofunctional state of multipotent mesenchymal stromal cells. The illumination regimes used in our experiments did not lead to any substantial heating of the samples; the physical parameters of the lighting were carefully monitored. When the samples were illuminated with a green light, no significant photostimulatory effect was observed. Red light, on the other hand, had an evident photostimulatory effect. It is shown that photostimulation with a red light decreases the enzymatic activities of mitochondrial dehydrogenases and enhances the viability of cells, their proliferative activity, and their ability to form bone tissue. It is also established that red light stimulates cell proliferation, while not activating the genes that increase the risk of the subsequent malignant transformation of cells or their death. This paper discusses the possible role of hydrogen peroxide in the processes examined.
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Affiliation(s)
- A S Chernov
- National Research Center "Kurchatov Institute", Akademika Kurchatova pl. 1, Moscow, Russia, 123182.
| | - D A Reshetnikov
- Institute of Cell Biophysics, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Russian Academy of Sciences, Nauki Ave., 3, Pushchino, Moscow Region, Russia, 142290
| | - G K Ristsov
- Institute of Biochemistry and Physiology of Microorganisms, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Russian Academy of Sciences, Nauki Ave., 3, Pushchino, Moscow Region, Russia, 142290
| | - Yu A Kovalitskaya
- Branch of the Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Institutskaya St. 6, Pushchino, Moscow Oblast, Russia, 142290
| | - A M Ermakov
- Institute of Theoretical and Experimental Biophysics of the Russian Academy of Sciences, Institutskaya St. 6, Pushchino, Moscow Region, Russia, 142290
| | - A A Manokhin
- Institute of Cell Biophysics, Federal Research Center "Pushchino Scientific Center for Biological Research of the Russian Academy of Sciences", Russian Academy of Sciences, Nauki Ave., 3, Pushchino, Moscow Region, Russia, 142290
| | - A V Simakin
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Vavilova Ave., 38, Moscow, Russia, 119991
| | - R G Vasilov
- National Research Center "Kurchatov Institute", Akademika Kurchatova pl. 1, Moscow, Russia, 123182
| | - S V Gudkov
- Prokhorov General Physics Institute of the Russian Academy of Sciences, Vavilova Ave., 38, Moscow, Russia, 119991
- All-Russia Research Institute for Phytopathology, B. Vyazyomy, Moscow Region, Russia, 143050
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4
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Gandra UR, Sinopoli A, Moncho S, NandaKumar M, Ninković DB, Zarić SD, Sohail M, Al-Meer S, Brothers EN, Mazloum NA, Al-Hashimi M, Bazzi HS. Green Light-Responsive CO-Releasing Polymeric Materials Derived from Ring-Opening Metathesis Polymerization. ACS APPLIED MATERIALS & INTERFACES 2019; 11:34376-34384. [PMID: 31490644 DOI: 10.1021/acsami.9b12628] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Carbon monoxide (CO) is an important biological gasotransmitter in living cells. Precise spatial and temporal control over release of CO is a major requirement for clinical application. To date, the most reported carbon monoxide releasing materials use expensive fabrication methods and require harmful and poorly designed tissue-penetrating UV irradiation to initiate the CO release precisely at infected sites. Herein, we report the first example of utilizing a green light-responsive CO-releasing polymer P synthesized via ring-opening metathesis polymerization. Both monomer M and polymer P were very stable under dark conditions and CO release was effectively triggered using minimal power and low energy wavelength irradiation (550 nm, ≤28 mW). Time-dependent density functional theory (TD-DFT) calculations were carried out to simulate the electronic transition and insight into the nature of the excitations for both L and M. TD-DFT calculations indicate that the absorption peak of M is mainly due to the excitation of the seventh singlet excited state, S7. Furthermore, stretchable materials using polytetrafluoroethylene (PTFE) strips based on P were fabricated to afford P-PTFE, which can be used as a simple, inexpensive, and portable CO storage bandage. Insignificant cytotoxicity as well as cell permeability was found for M and P against human embryonic kidney cells.
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Affiliation(s)
- Upendar Reddy Gandra
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
| | - Alessandro Sinopoli
- Qatar Environmental & Energy Research Institute , Hamad Bin Khalifa University , P.O. Box 34110, Doha , Qatar
| | - Salvador Moncho
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
| | - Manjula NandaKumar
- Department of Microbiology and Immunology , Weill Cornell Medicine-Qatar , P.O. Box 24144, Doha , Qatar
| | - Dragan B Ninković
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
- Innovation Center of Faculty of Chemistry , Studentski trg 12-16 , 11000 Belgrade , Serbia
| | - Snežana D Zarić
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
- Faculty of Chemistry , Belgrade University , Studentski trg 12-16 , 11000 Belgrade , Serbia
| | - Muhammad Sohail
- Qatar Environmental & Energy Research Institute , Hamad Bin Khalifa University , P.O. Box 34110, Doha , Qatar
| | | | - Edward N Brothers
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
| | - Nayef A Mazloum
- Department of Microbiology and Immunology , Weill Cornell Medicine-Qatar , P.O. Box 24144, Doha , Qatar
| | - Mohammed Al-Hashimi
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
| | - Hassan S Bazzi
- Department of Chemistry , Texas A&M University at Qatar , P.O. Box 23874, Doha , Qatar
- Department of Materials Science & Engineering , Texas A&M University , 209 Reed McDonald Building , 77843-3003 College Station , Texas , United States
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Kim KN, Yun CN, Sin UC, Huang ZJ, Huang QY, Lei CL. Green light and light stress in moth: influence on antioxidant enzymes in the oriental armyworm, Mythimna separata (Lepidoptera: Noctuidae). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:35176-35183. [PMID: 30328544 DOI: 10.1007/s11356-018-3415-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2018] [Accepted: 10/08/2018] [Indexed: 06/08/2023]
Abstract
Recently, light traps equipped with light-emitting diodes (LEDs) have been widely applied for controlling nocturnal pest moths. The oriental armyworm, known as Mythimna separata Walker, is an important insect pest in eastern Asia. The present study aimed to evaluate an influence of green light irradiation on antioxidant enzymes and light stress in M. separata adults. We determined total antioxidant capacity (T-AOC) and an activity of superoxide dismutase (SOD), catalase (CAT), peroxidase (POD), and glutathione-S-transferase (GST) in the moth bodies according to an exposure time (0 to 180 min) of a green LED light. By our results, we suggested that the green (520 nm) LED light irradiation could induce a weak oxidative stress in M. separata adult moths, and the moths under the green light could restore the damage caused by this light stress. Additionally, we proposed that the adaptive ability to the light stress varied between the moths of different sexes. Our results may provide a theoretical and scientific basis for elucidating a reason of the phototactic behavior of nocturnal moths, including M. separata adults.
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Affiliation(s)
- Kil-Nam Kim
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
- The Institute for Biodiversity, State Academy of Sciences, Pyongyang, Democratic People's Republic of Korea
| | - Chol-Nam Yun
- The Institute for Biodiversity, State Academy of Sciences, Pyongyang, Democratic People's Republic of Korea
| | - Un-Chol Sin
- Biochemistry Laboratory, Pyong yang Medical College, Kim Il Sung University, Pyongyang, Democratic People's Republic of Korea
| | - Zhi-Juan Huang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Qiu-Ying Huang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
| | - Chao-Liang Lei
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, Hubei, China.
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Visible light neutralizes the effect produced by ultraviolet radiation in proteins. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2017; 167:15-19. [DOI: 10.1016/j.jphotobiol.2016.11.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2016] [Revised: 11/15/2016] [Accepted: 11/17/2016] [Indexed: 12/24/2022]
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Stimulatory and possible antioxidant effects of High Density Green Photons (HDGP) on cellular systems. J Med Life 2014; 7:619-22. [PMID: 25713633 PMCID: PMC4316150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Accepted: 10/20/2014] [Indexed: 11/28/2022] Open
Abstract
The interactions between the electromagnetic field and the biological systems were extensively investigated, with remarkable results and advanced technologies. Nevertheless, the visible domain of the spectrum has been rather neglected, since the classic physics did not allow electronic transitions induced by visible light. Recently, the interaction of light with the matter has generated a new scientific domain known in Physics as optical manipulation, with the new concepts of optical matter and optical force. This article presents the results of our work concerning in vitro effects of High Density Green Photons (HDGP) irradiation on cell cultures: stimulation of cell proliferation and migration and a possible antioxidant action.
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Farcasanu IC, Mitrica R, Cristache L, Nicolau I, Ruta LL, Paslaru L, Comorosan S. Optical manipulation ofSaccharomyces cerevisiaecells reveals that green light protection against UV irradiation is favored by low Ca2+and requires intact UPR pathway. FEBS Lett 2013; 587:3514-21. [DOI: 10.1016/j.febslet.2013.09.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2013] [Revised: 09/05/2013] [Accepted: 09/10/2013] [Indexed: 12/16/2022]
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9
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Comorosan S, Polosan S, Jipa S, Popescu I, Marton G, Ionescu E, Cristache L, Badila D, Mitrica R. Green light radiation effects on free radicals inhibition in cellular and chemical systems. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2011; 102:39-44. [PMID: 20934350 DOI: 10.1016/j.jphotobiol.2010.09.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2010] [Revised: 08/25/2010] [Accepted: 09/06/2010] [Indexed: 10/19/2022]
Abstract
Free radicals generation is inhibited through green light (GL) irradiation in cellular systems and in chemical reactions. Standard melanocyte cultures were UV-irradiated and the induced cellular reactive oxygen species (ROS) were quantified by the fluorescence technique. The same cell cultures, previously protected by a 24h GL exposure, displayed a significantly lower ROS production. A simple chemical reaction is subsequently chosen, in which the production of free radicals is well defined. Paraffin wax and mineral oil were GL irradiated during thermal degradation and the oxidation products checked by chemiluminescence [CL] and Fourier transform infrared spectra [FT-IR]. The same clear inhibition of the radical oxidation of alkanes is recorded. A quantum chemistry modeling of these results is performed and a mechanism involving a new type of Rydberg macromolecular systems with implications for biology and medicine is suggested.
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Affiliation(s)
- Sorin Comorosan
- Department of Biophysics, University of Medicine and Pharmacy, Bucharest, Romania.
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Structural studies on serum albumins under green light irradiation. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2010; 39:1483-91. [DOI: 10.1007/s00249-010-0606-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2009] [Revised: 04/02/2010] [Accepted: 04/20/2010] [Indexed: 10/19/2022]
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