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Ramírez-Reyes T, Armendáriz-Toledano F, Rodríguez LGC. Rearranging and completing the puzzle: Phylogenomic analysis of bark beetles Dendroctonus reveals new hypotheses about genus diversification. Mol Phylogenet Evol 2023; 187:107885. [PMID: 37467902 DOI: 10.1016/j.ympev.2023.107885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 07/07/2023] [Accepted: 07/16/2023] [Indexed: 07/21/2023]
Abstract
Studies carried out on bark beetles within Dendroctonus have been extensive and revealed diverse information in different areas of their natural history, taxonomy, evolution, and interactions, among others. Despite these efforts, phylogenetic hypotheses have remained obscured mainly due to limited information analyzed (taxonomic, gene sampling, or both) in studies focused on obtaining evolutionary hypotheses for this genus. With the aim of filling these gaps in the evolutionary history for Dendroctonus, we analyzed ∼1800 loci mapped to a reference genome obtained for 20 of the 21 species recognized to date, minimizing the impact of missing information and improving the assumption of orthology in a phylogenomic framework. We obtained congruent phylogenetic topologies from two phylogenomic inference strategies: loci concatenation (ML framework) and a multispecies coalescent model (MSC) through the analysis of site pattern frequencies (SNPs). Dendroctonus is composed of two major clades (A and B), each containing five and four subclades, respectively. According to our divergence dating analysis, the MRCA for Dendroctonus dates back to the early Eocene, while the MRCA for each major clade diverged in the mid-Eocene. Interestingly, most of the speciation events of extant species occurred during the Miocene, which could be correlated with the diversification of pine trees (Pinus). The MRCA for Dendroctonus inhabited large regions of North America, with all ancestors and descendants of clade A having diversified within this region. The Mexican Transition Zone is important in the diversification processes for the majority of clade A species. For clade B, we identified two important colonization events to the Old World from America: the first in the early Oligocene from the Arctic to Asia (via Beringia), and the second during the Miocene from the Arctic-Western-Alleghany region to Europe and Siberia (also via Beringia). Our genomic analyses also supported the existence of hidden structured lineages within the frontalis complex, and also that D. beckeri represent a lineage independent from D. valens, as previously suggested. The information presented here updates the knowledge concerning the diversification of a genus with remarkable ecological and economic importance.
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Affiliation(s)
- Tonatiuh Ramírez-Reyes
- Instituto de Biología, Departamento de Zoología, Colección Nacional de Insectos, Universidad Nacional Autónoma de México, Circuito Zona Deportiva S/N, C.U., Coyoacán, 04510 Ciudad de México, Mexico; Facultad de Ciencias Forestales, Universidad Autónoma de Nuevo León, Carretera Nacional 85, Km. 145, 67700 Linares, Nuevo León, Mexico
| | - Francisco Armendáriz-Toledano
- Instituto de Biología, Departamento de Zoología, Colección Nacional de Insectos, Universidad Nacional Autónoma de México, Circuito Zona Deportiva S/N, C.U., Coyoacán, 04510 Ciudad de México, Mexico.
| | - Luis Gerardo Cuéllar Rodríguez
- Facultad de Ciencias Forestales, Universidad Autónoma de Nuevo León, Carretera Nacional 85, Km. 145, 67700 Linares, Nuevo León, Mexico
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Vazquez-Ortiz K, Pineda-Mendoza RM, González-Escobedo R, Davis TS, Salazar KF, Rivera-Orduña FN, Zúñiga G. Metabarcoding of mycetangia from the Dendroctonus frontalis species complex (Curculionidae: Scolytinae) reveals diverse and functionally redundant fungal assemblages. Front Microbiol 2022; 13:969230. [PMID: 36187976 PMCID: PMC9524821 DOI: 10.3389/fmicb.2022.969230] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 08/18/2022] [Indexed: 11/13/2022] Open
Abstract
Dendroctonus-bark beetles are associated with microbes that can detoxify terpenes, degrade complex molecules, supplement and recycle nutrients, fix nitrogen, produce semiochemicals, and regulate ecological interactions between microbes. Females of some Dendroctonus species harbor microbes in specialized organs called mycetangia; yet little is known about the microbial diversity contained in these structures. Here, we use metabarcoding to characterize mycetangial fungi from beetle species in the Dendroctonus frontalis complex, and analyze variation in biodiversity of microbial assemblages between beetle species. Overall fungal diversity was represented by 4 phyla, 13 classes, 25 orders, 39 families, and 48 genera, including 33 filamentous fungi, and 15 yeasts. The most abundant genera were Entomocorticium, Candida, Ophiostoma-Sporothrix, Ogataea, Nakazawaea, Yamadazyma, Ceratocystiopsis, Grosmannia-Leptographium, Absidia, and Cyberlindnera. Analysis of α-diversity indicated that fungal assemblages of D. vitei showed the highest richness and diversity, whereas those associated with D. brevicomis and D. barberi had the lowest richness and diversity, respectively. Analysis of β-diversity showed clear differentiation in the assemblages associated with D. adjunctus, D. barberi, and D. brevicomis, but not between closely related species, including D. frontalis and D. mesoamericanus and D. mexicanus and D. vitei. A core mycobiome was not statistically identified; however, the genus Ceratocystiopsis was shared among seven beetle species. Interpretation of a tanglegram suggests evolutionary congruence between fungal assemblages and species of the D. frontalis complex. The presence of different amplicon sequence variants (ASVs) of the same genus in assemblages from species of the D. frontalis complex outlines the complexity of molecular networks, with the most complex assemblages identified from D. vitei, D. mesoamericanus, D. adjunctus, and D. frontalis. Analysis of functional variation of fungal assemblages indicated multiple trophic groupings, symbiotroph/saprotroph guilds represented with the highest frequency (∼31% of identified genera). These findings improve our knowledge about the diversity of mycetangial communities in species of the D. frontalis complex and suggest that minimal apparently specific assemblages are maintained and regulated within mycetangia.
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Affiliation(s)
- Karina Vazquez-Ortiz
- Laboratorio de Variación Biológica y Evolución, Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico
| | - Rosa María Pineda-Mendoza
- Laboratorio de Variación Biológica y Evolución, Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico
| | - Román González-Escobedo
- Laboratorio de Microbiología, Facultad de Zootecnia y Ecología, Universidad Autónoma de Chihuahua, Chihuahua, Mexico
| | - Thomas S. Davis
- Department of Forest and Rangeland Stewardship, Warner College of Natural Resources, Colorado State University, Fort Collins, CO, United States
| | - Kevin F. Salazar
- Laboratorio de Variación Biológica y Evolución, Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico
| | - Flor N. Rivera-Orduña
- Laboratorio de Ecología Microbiana, Departamento de Microbiología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico
- *Correspondence: Flor N. Rivera-Orduña,
| | - Gerardo Zúñiga
- Laboratorio de Variación Biológica y Evolución, Departamento de Zoología, Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Mexico City, Mexico
- Gerardo Zúñiga,
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Rivera-Dávila OL, Sánchez-Martínez G, Rico-Martínez R. Toxicity tests, bioaccumulation and residuality of pyrethroid insecticides commonly used to control conifer bark beetles in Mexico. ECOTOXICOLOGY (LONDON, ENGLAND) 2022; 31:782-796. [PMID: 35445954 DOI: 10.1007/s10646-022-02546-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 03/30/2022] [Indexed: 06/14/2023]
Abstract
Effectiveness of pyrethroid insecticides against pests including bark beetles (Dendroctonus spp.) is well known, but little is known about their (a) residuality and persistence in forests after application to control an outbreak and (b) ability to bioaccumulate in insects, which could cause adverse effects on the trophic chains. The 24 h lethal toxicity, bioaccumulation factors, and lethal body burdens of the pyrethroid insecticides bifenthrin, deltamethrin, and cypermethrin were evaluated in the bark beetle Dendroctonus mexicanus. The residuality and persistence of the insecticide bifenthrin in the forest ecosystem (soil, water, and sediment) was also monitored after its application in a region infested by bark beetles. We determined whether contamination of soil, water, and sediments occurred near the sanitation site. For D. mexicanus, the most toxic insecticide for adults was bifenthrin for topical application (LC50 = 0.94 mg/L) and cypermethrin for bark application (LC50 = 5.04 mg/L). The insecticide that bioaccumulated the most in the insect body was deltamethrin (622.41 μg g-1 dw) and the insecticide that bioaccumulated the least amount was cypermethrin (183.09 μg g-1 dw). However, cypermethrin was the active substance that presented the lowest body burdens, and therefore required a lower dose to cause death of D. mexicanus adults. Our results demonstrate that prolonged presence of bifenthrin in the forest ecosystem could lead to bioaccumulation in soil, sediment, and insects.
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Affiliation(s)
- Olga Lidia Rivera-Dávila
- Departamento de Química. Avenida Universidad 940. Aguascalientes, Universidad Autónoma de Aguascalientes. Centro de Ciencias Básicas, Aguascalientes, C.P. 20131, Mexico
| | - Guillermo Sánchez-Martínez
- Centro de Investigación Regional Norte Centro, Campo Experimental Pabellón, INIFAP, Km. 32.5 Carretera Aguascalientes-Zacatecas, Pabellón de Arteaga, Ags. C.P. 20670, Mexico.
| | - Roberto Rico-Martínez
- Departamento de Química. Avenida Universidad 940. Aguascalientes, Universidad Autónoma de Aguascalientes. Centro de Ciencias Básicas, Aguascalientes, C.P. 20131, Mexico.
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