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Oxadiazole Schiff Base as Fe 3+ Ion Chemosensor: "Turn-off" Fluorescent, Biological and Computational Studies. J Fluoresc 2023; 33:751-772. [PMID: 36515760 DOI: 10.1007/s10895-022-03083-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Accepted: 11/09/2022] [Indexed: 12/15/2022]
Abstract
Compound, (E)-5-(4-((thiophen-2-ylmethylene)amino)phenyl)-1,3,4-oxadiazole-2-thiol (3) was synthesized via condensation reaction of 5-(4-aminophenyl)-1,3,4-oxadiazole-2-thiol with thiophene-2-carbaldehyde in ethanol. For the synthesis and structural confirmation the FT-IR, 1H, 13C-NMR, UV-visible spectroscopy, and mass spectrometry were carried out. The long-term stability of the probe (3) was validated by the experimental as well as theoretical studies. The sensing behaviour of the compound 3 was monitored with various metal ions (Ca2+, Cr3+, Fe3+, Co2+, Mg2+, Na+, Ni2+, K+) using UV- Vis. and fluorescence spectroscopy techniques by various methods (effect of pH and density functional theory) which showing the most potent sensing behaviour with iron. Job's plot analysis confirmed the binding stoichiometry ratio 1:1 of Fe3+ ion and compound 3. The limit of detection (LOD), the limit of quantification (LOQ), and association constant (Ka) were calculated as 0.113 µM, 0.375 µM, and 5.226 × 105 respectively. The sensing behavior was further confirmed through spectroscopic techniques (FT-IR and 1H-NMR) and DFT calculations. The intercalative mode of binding of oxadiazole derivative 3 with Ct-DNA was supported through UV-Vis spectroscopy, fluorescence spectroscopy, viscosity, cyclic voltammetry, and circular dichroism measurements. The binding constant, Gibb's free energy, and stern-volmer constant were find out as 1.24 × 105, -29.057 kJ/mol, and 1.82 × 105 respectively. The cleavage activity of pBR322 plasmid DNA was also observed at 3 × 10-5 M concentration of compound 3. The computational binding score through molecular docking study was obtained as -7.4 kcal/mol. Additionally, the antifungal activity for compound 3 was also screened using broth dilution and disc diffusion method against C. albicans strain. The synthesized compound 3 showed good potential scavenging antioxidant activity against DPPH and H2O2 free radicals.
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2
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Hydrobenzoic acid-based ‘Turn-Off’ fluorescent sensor for selective detection of Cu2+ ions: Chemical preparation, characterization and photophysical studies. INORG CHEM COMMUN 2023. [DOI: 10.1016/j.inoche.2023.110467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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3
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Wang X, Huang J, Wei H, Wu L, Xing H, Zhu J, Kan C. A novel Fe3+ fluorescent probe based on rhodamine derivatives and its application in biological imaging. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133979] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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4
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Yasmeen S, Qais FA, Rana M, Islam A, Rahisuddin. Binding and thermodynamic study of thalidomide with calf thymus DNA: Spectroscopic and computational approaches. Int J Biol Macromol 2022; 207:644-655. [PMID: 35278515 DOI: 10.1016/j.ijbiomac.2022.03.036] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 03/04/2022] [Accepted: 03/07/2022] [Indexed: 02/09/2023]
Abstract
The thalidomide-DNA interactions have been investigated in detail by numerous biophysical techniques such as UV-vis, dye displacement assay, viscosity, cyclic voltammetry, circular dichroism, molecular docking, molecular dynamic simulation, FT-IR and 1H NMR spectroscopy. CD spectroscopy, thermal denaturation and viscosity measurement explained that thalidomide is groove binder. Molecular docking analysis highlighted that thalidomide binds trough minor groove of calf thymus DNA which also confirmed from dye displacement experiment. To our knowledge, this is the first instance thalidomide was shown to binds with calf thymus DNA. Molecular dynamic simulation indicated that the thalidomide-DNA system was stabilized by electrostatic attraction as the main interaction and mode of binding is minor groove. Our study provides a better understanding to the DNA-thalidomide binding affinity and it mechanism. Overall, all these in formations can be used for further understanding the pharmacological effects of thalidomide.
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Affiliation(s)
- Shama Yasmeen
- Department of Chemistry, Jamia Millia Islamia, New Delhi 110025, India
| | - Faizan Abul Qais
- Department of Agricultural Microbiology, Aligarh Muslim University, Aligarh, UP 202002, India
| | - Manish Rana
- Department of Chemistry, Jamia Millia Islamia, New Delhi 110025, India
| | - Asimul Islam
- Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi 110025, India
| | - Rahisuddin
- Department of Chemistry, Jamia Millia Islamia, New Delhi 110025, India.
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5
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Arif R, Rana M, Yasmeen S, Amaduddin, Khan MS, Abid M, Khan M, Rahisuddin. Facile synthesis of chalcone derivatives as antibacterial agents: Synthesis, DNA binding, molecular docking, DFT and antioxidant studies. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.127905] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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6
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Shamsi F, Aneja B, Hasan P, Zeya B, Zafaryab M, Mehdi SH, Rizvi MMA, Patel R, Rana S, Abid M. Synthesis, Anticancer Evaluation and DNA‐Binding Spectroscopic Insights of Quinoline‐Based 1,3,4‐Oxadiazole‐1,2,3‐triazole Conjugates. ChemistrySelect 2019. [DOI: 10.1002/slct.201902797] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Farheen Shamsi
- Medicinal Chemistry LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
- Genome Biology LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - Babita Aneja
- Medicinal Chemistry LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - Phool Hasan
- Medicinal Chemistry LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - Bushra Zeya
- Genome Biology LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - M Zafaryab
- Genome Biology LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - Syed Hassan Mehdi
- Genome Biology LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - M. Moshahid Alam Rizvi
- Genome Biology LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - Rajan Patel
- Biophysical Chemistry LaboratoryCentre for Interdisciplinary Research in Basic SciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
| | - Sandeep Rana
- Eppley Institute for Research in Cancer & Allied DiseasesUniversity of Nebraska Medical Center Omaha NE 68198–6805 USA
| | - Mohammad Abid
- Medicinal Chemistry LaboratoryDepartment of BiosciencesJamia Millia Islamia, Jamia Nagar New Delhi 110025 India
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7
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Synthesis, DNA Binding, and Molecular Docking Studies of Dimethylaminobenzaldehyde-Based Bioactive Schiff Bases. J CHEM-NY 2019. [DOI: 10.1155/2019/8152721] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
A new series of p-dimethylaminobenzaldehyde derivatives were tested for therapeutic potential by exploring their properties through characterization. The derivatives were synthesized by 1 : 1 condensation reaction of p-dimethylaminobenzaldehyde and substituted amines. The synthesized compounds 1–8 were characterized by different characterization techniques including IR, mass, 1H NMR, and 13C NMR spectroscopy, elemental analysis, and mass spectrometry. Furthermore, binding of these Schiff bases to Ct-DNA was examined by absorption spectroscopy, fluorescence quenching, circular dichroic, viscosity measurement, molecular docking, and molecular dynamics simulation methods. Schiff bases were tested for antimicrobial activity against bacterial species Escherichia coli, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Staphylococcus aureus by the disc diffusion method. The pharmacological treatment of Schiff bases showed that 1–8 have promising potential against tested bacterial strains. The molecular docking study of the target compounds was also carried out against B-DNA dodecamer d(CGCGAATTCGCG)2, and it has been found that 1–8 can bind to Ct-DNA via an intercalative mode. DPPH free radical and hydrogen peroxide scavenging assays were employed to assess the antioxidant potential of synthesized Schiff bases.
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Arif R, Nayab PS, Akrema, Abid M, Yadava U, Rahisuddin. Investigation of DNA binding and molecular docking propensity of phthalimide derivatives: in vitro antibacterial and antioxidant assay. J Anal Sci Technol 2019. [DOI: 10.1186/s40543-019-0177-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
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9
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Sennappan M, Murali Krishna P, Hari Krishna R. Facile synthesis, characterization, nucleic acid interaction and photoluminescent properties of (E)-furan-2-yl(2-(2-hydroxybenzylidene)hydrazinyl) methaniminium and its Mn(II), Co(II), Ni(II), Cu(II), Zn(II) and Cd(II) complexes. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.10.037] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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10
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Synthesis, structure and DNA binding properties of a homodinuclear Cu(II) complex: An experimental and theoretical approach. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.081] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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11
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Khan MS, Khalid M, Ahmad MS, Ahmad M, Ashafaq M, Rahisuddin, Arif R, Shahid M. Synthesis, spectral and crystallographic study, DNA binding and molecular docking studies of homo dinuclear Co(II) and Ni(II) complexes. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2018.08.048] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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12
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Ahamad MN, Shahid M, Ansari A, Kumar M, Khan IM, Ahmad M, Rahisuddin R, Arif R. A combined experimental and theoretical approach to investigate the structure, magnetic properties and DNA binding affinity of a homodinuclear Cu(ii) complex. NEW J CHEM 2019. [DOI: 10.1039/c9nj00228f] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
A dicopper(ii) complex of a flexible amino alcohol anchored with an acetate auxiliary was designed and characterized by spectral, X-ray crystallographic, magnetic and DFT studies; moreover, it was evaluated for its DNA binding properties. The experimental results are supported by theoretical analyses.
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Affiliation(s)
- M. Naqi Ahamad
- Department of Chemistry
- Aligarh Muslim University
- Aligarh-202002
- India
| | - M. Shahid
- Department of Chemistry
- Aligarh Muslim University
- Aligarh-202002
- India
| | - Azaj Ansari
- Department of Chemistry
- Central University of Haryana
- Mahendergarh-123031
- India
| | - Manjeet Kumar
- Department of Chemistry
- Central University of Haryana
- Mahendergarh-123031
- India
| | - Ishaat M. Khan
- Department of Chemistry
- Aligarh Muslim University
- Aligarh-202002
- India
| | - Musheer Ahmad
- Department of Applied Chemistry (ZHCET)
- Aligarh Muslim University
- Aligarh-202002
- India
| | | | - Rizwan Arif
- Department of Chemistry
- Jamia Millia Islamia (A Central University)
- New Delhi
- India
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Mohapatra RK, Das PK, Pradhan MK, Maihub AA, El-ajaily MM. Biological aspects of Schiff base–metal complexes derived from benzaldehydes: an overview. JOURNAL OF THE IRANIAN CHEMICAL SOCIETY 2018. [DOI: 10.1007/s13738-018-1411-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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14
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Synthesis, molecular docking and DNA binding studies of phthalimide-based copper(II) complex: In vitro antibacterial, hemolytic and antioxidant assessment. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2018.02.008] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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15
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Dubey R, Yerrasani R, Karunakar M, Singh AK, Kumar S, Rao T. Synthesis, structural and mesophase characterization of isoindoline-1,3-dione based mesogenic Schiff bases. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2017.12.067] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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16
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Tian Z, Cui H, Liu H, Dong J, Dong H, Zhao L, Li X, Zhang Y, Huang Y, Song L, Bian L, Wang Y, Xu X, Wang C. Study on the interaction between the 1,4,5,8-naphthalene diimide-spermine conjugate (NDIS) and DNA using a spectroscopic approach and molecular docking. MEDCHEMCOMM 2017; 8:2079-2092. [PMID: 30108725 PMCID: PMC6072523 DOI: 10.1039/c7md00389g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Accepted: 09/26/2017] [Indexed: 01/23/2023]
Abstract
The interaction of herring sperm DNA with the 1,4,5,8-naphthalene diimide-spermine conjugate (NDIS) was studied by UV/vis absorption, fluorescence and CD spectroscopic methods. Compared with the 1,8-naphthalimide-spermidine conjugate (NIS), the values of KSV (quenching constant) and Kb (binding constant) of NDIS were larger, and the hypochromic effect in the UV/vis spectra and the quenching effect in the fluorescence of NDIS were more significant. The interaction mode between NDIS and DNA was mainly groove binding. The fluorescence experiments at varying temperatures showed that the binding process of NDIS and DNA was static, as both hydrogen bonds and hydrophobic forces played a major role in the binding of NDIS and DNA. The CD spectrum indicated that NDIS caused a conformational change, like the B to A-DNA transition, and the tests using KI and NaCl and 1H NMR spectroscopy indicated that NDIS was not a classical DNA inserter. All the results demonstrated that both the polyamine side chain and the aromatic rings affect the process of NDIS binding to DNA, which is thus obviously different from that of NIS. The conclusion was confirmed by the in silico molecular docking experiments.
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Affiliation(s)
- Zhiyong Tian
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Hailong Cui
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - He Liu
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Jun Dong
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Huanyang Dong
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Luyao Zhao
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Xueting Li
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Yan Zhang
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Yingying Huang
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Lina Song
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Longxiang Bian
- The Key Laboratory of Natural Medicine and Immuno-Engineering , Henan University , Kaifeng 475004 , China . ; ; Tel: +86 18621534352 ; Tel: +86 13619810550
| | - Yuxia Wang
- Institute of Chemical Biology , Henan University , Kaifeng 475004 , China . ; Tel: +86 18739998722
| | - Xuejun Xu
- The Key Laboratory of Natural Medicine and Immuno-Engineering , Henan University , Kaifeng 475004 , China . ; ; Tel: +86 18621534352 ; Tel: +86 13619810550
| | - Chaojie Wang
- The Key Laboratory of Natural Medicine and Immuno-Engineering , Henan University , Kaifeng 475004 , China . ; ; Tel: +86 18621534352 ; Tel: +86 13619810550
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Nayab PS, Akrema, Ansari IA, Shahid M, Rahisuddin. New phthalimide-appended Schiff bases: Studies of DNA binding, molecular docking and antioxidant activities. LUMINESCENCE 2016; 32:829-838. [DOI: 10.1002/bio.3259] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Revised: 10/22/2016] [Accepted: 10/26/2016] [Indexed: 12/14/2022]
Affiliation(s)
| | - Akrema
- Department of Chemistry; Jamia Millia Islamia; New Delhi India
| | | | - Mohammad Shahid
- Department of Chemistry; Aligarh Muslim University; Aligarh India
| | - Rahisuddin
- Department of Chemistry; Jamia Millia Islamia; New Delhi India
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18
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RETRACTED: Synthesis and studies of selective chemosensor for naked-eye detection of anions and cations based on a new Schiff-base derivative. Talanta 2016; 159:292-299. [DOI: 10.1016/j.talanta.2016.06.042] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2015] [Revised: 06/18/2016] [Accepted: 06/20/2016] [Indexed: 01/25/2023]
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19
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Nayab PS, Irfan M, Abid M, Pulaganti M, Nagaraju C, Chitta SK, Rahisuddin. Experimental and molecular docking investigation on DNA interaction ofN-substituted phthalimides: antibacterial, antioxidant and hemolytic activities. LUMINESCENCE 2016; 32:298-308. [DOI: 10.1002/bio.3178] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2016] [Revised: 05/24/2016] [Accepted: 05/26/2016] [Indexed: 12/17/2022]
Affiliation(s)
| | - Mohammad Irfan
- Department of Biosciences; Jamia Millia Islamia; New Delhi 110025 Delhi India
| | - Mohammad Abid
- Department of Biosciences; Jamia Millia Islamia; New Delhi 110025 Delhi India
| | - Madhusudana Pulaganti
- Department of Biochemistry; Sri Krishnadevraya University; Ananthapuram 515003 Andhra Pradesh India
| | - Chinthakunta Nagaraju
- Department of Biochemistry; Sri Krishnadevraya University; Ananthapuram 515003 Andhra Pradesh India
| | - Suresh Kumar Chitta
- Department of Biochemistry; Sri Krishnadevraya University; Ananthapuram 515003 Andhra Pradesh India
| | - Rahisuddin
- Department of Chemistry; Jamia Millia Islamia; New Delhi 110025 Delhi India
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