Data Mining in HIV-AIDS Surveillance System : Application to Portuguese Data

Forecasting the monthly incidence rate of brucellosis in west of Iran using time series and data mining from 2010 to 2019

Background

The identification of statistical models for the accurate forecast and timely determination of the outbreak of infectious diseases is very important for the healthcare system. Thus, this study was conducted to assess and compare the performance of four machine-learning methods in modeling and forecasting brucellosis time series data based on climatic parameters.

Methods

In this cohort study, human brucellosis cases and climatic parameters were analyzed on a monthly basis for the Qazvin province–located in northwestern Iran- over a period of 9 years (2010–2018). The data were classified into two subsets of education (80%) and testing (20%). Artificial neural network methods (radial basis function and multilayer perceptron), support vector machine and random forest were fitted to each set. Performance analysis of the models were done using the Root Mean Square Error (RMSE), Mean Absolute Error (MAE), Mean Absolute Root Error (MARE), and R² criteria.

Results

The incidence rate of the brucellosis in Qazvin province was 27.43 per 100,000 during 2010–2019. Based on our results, the values of the RMSE (0.22), MAE (0.175), MARE (0.007) criteria were smaller for the multilayer perceptron neural network than their values in the other three models. Moreover, the R² (0.99) value was bigger in this model. Therefore, the multilayer perceptron neural network exhibited better performance in forecasting the studied data. The average wind speed and mean temperature were the most effective climatic parameters in the incidence of this disease.

Conclusions

The multilayer perceptron neural network can be used as an effective method in detecting the behavioral trend of brucellosis over time. Nevertheless, further studies focusing on the application and comparison of these methods are needed to detect the most appropriate forecast method for this disease.

Exploring the Important Attributes of Human Immunodeficiency Virus and Generating Decision Rules

Acquired Immunodeficiency Syndrome (AIDS) is the most severe phase of Human Immunodeficiency Virus (HIV) infection. Living with HIV results in a weakened immune system, with AIDS being the final stage of HIV and puzzling the world. The current medical environment remains unable to effectively cure AIDS, with treatment depending on long-term antiretroviral therapy (ART). To effectively treat and prevent HIV, it is important to elucidate the key factors of HIV propagation. This study proposes a rough set classifier based on adding recency (R) (i.e., the last physician visit), frequency (F) (i.e., the frequency of medical visits), and monetary (M) (i.e., medication adherence) attributes and integrated attribute selection methods to generate discriminatory rules and find the core attributes of HIV. The collected data consist of 1308 HIV infection records from Taiwan. From the experimental results, the frequency of CD4+ cells in the peripheral blood is able to determine patient medication, treatment willingness, and HIV infection stages, because HIV patients are less likely to be willing to receive long-term ART. Furthermore, drug abuse is found to be the greatest cause of HIV infection. These results show that the additional RFM attributes can improve classification accuracy, with the core attributes being M, R, plasma viral load (PVL) and age. Hence, we suggest that clinical physicians use these core attributes to understand the HIV infection stages.