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Reinhardt A, Chew PY, Cheng B. A streamlined molecular-dynamics workflow for computing solubilities of molecular and ionic crystals. J Chem Phys 2023; 159:184110. [PMID: 37962445 DOI: 10.1063/5.0173341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2023] [Accepted: 10/20/2023] [Indexed: 11/15/2023] Open
Abstract
Computing the solubility of crystals in a solvent using atomistic simulations is notoriously challenging due to the complexities and convergence issues associated with free-energy methods, as well as the slow equilibration in direct-coexistence simulations. This paper introduces a molecular-dynamics workflow that simplifies and robustly computes the solubility of molecular or ionic crystals. This method is considerably more straightforward than the state-of-the-art, as we have streamlined and optimised each step of the process. Specifically, we calculate the chemical potential of the crystal using the gas-phase molecule as a reference state, and employ the S0 method to determine the concentration dependence of the chemical potential of the solute. We use this workflow to predict the solubilities of sodium chloride in water, urea polymorphs in water, and paracetamol polymorphs in both water and ethanol. Our findings indicate that the predicted solubility is sensitive to the chosen potential energy surface. Furthermore, we note that the harmonic approximation often fails for both molecular crystals and gas molecules at or above room temperature, and that the assumption of an ideal solution becomes less valid for highly soluble substances.
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Affiliation(s)
- Aleks Reinhardt
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Pin Yu Chew
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - Bingqing Cheng
- Institute of Science and Technology Austria, Am Campus 1, 3400 Klosterneuburg, Austria
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2
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Rahimpour E, Moradi M, Sheikhi-Sovari A, Rezaei H, Rezaei H, Jouyban-Gharamaleki V, Kuentz M, Jouyban A. Comparative Drug Solubility Studies Using Shake-Flask Versus a Laser-Based Robotic Method. AAPS PharmSciTech 2023; 24:207. [PMID: 37817041 DOI: 10.1208/s12249-023-02667-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 09/20/2023] [Indexed: 10/12/2023] Open
Abstract
Drug solubility is of central importance to the pharmaceutical sciences, but reported values often show discrepancies. Various factors have been discussed in the literature to account for such differences, but the influence of manual testing in comparison to a robotic system has not been studied adequately before. In this study, four expert researchers were asked to measure the solubility of four drugs with various solubility behaviors (i.e., paracetamol, mesalazine, lamotrigine, and ketoconazole) in the same laboratory with the same instruments, method, and material sources and repeated their measurements after a time interval. In addition, the same solubility data were determined using an automated laser-based setup. The results suggest that manual testing leads to a handling influence on measured solubility values, and the results were discussed in more detail as compared to the automated laser-based system. Within the framework of unavoidable uncertainties of solubility testing, it is a possibility to combine minimal experimental testing that is preferably automated with mathematical modeling. That is a practical suggestion to support future pharmaceutical development in a more efficient way.
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Affiliation(s)
- Elaheh Rahimpour
- Pharmaceutical Analysis Research Center and Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran
- Infectious and Tropical Diseases Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Milad Moradi
- Drug Applied Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | | | - Homa Rezaei
- Immunology Research Center, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Hadis Rezaei
- Research Center for Pharmaceutical Nanotechnology, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Vahid Jouyban-Gharamaleki
- Kimia Idea Pardaz Azarbayjan (KIPA) Science Based Company, Tabriz University of Medical Sciences, Tabriz, Iran
| | - Martin Kuentz
- Institute of Pharma Technology, University of Applied Sciences and Arts Northwestern Switzerland, Hofackerstr. 30, 4132, Muttenz, Switzerland
| | - Abolghasem Jouyban
- Pharmaceutical Analysis Research Center and Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz, Iran.
- Faculty of Pharmacy, Near East University, Mercin, Turkey.
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3
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Cysewski P, Jeliński T, Przybyłek M, Nowak W, Olczak M. Solubility Characteristics of Acetaminophen and Phenacetin in Binary Mixtures of Aqueous Organic Solvents: Experimental and Deep Machine Learning Screening of Green Dissolution Media. Pharmaceutics 2022; 14:pharmaceutics14122828. [PMID: 36559321 PMCID: PMC9781932 DOI: 10.3390/pharmaceutics14122828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Revised: 12/10/2022] [Accepted: 12/12/2022] [Indexed: 12/23/2022] Open
Abstract
The solubility of active pharmaceutical ingredients is a mandatory physicochemical characteristic in pharmaceutical practice. However, the number of potential solvents and their mixtures prevents direct measurements of all possible combinations for finding environmentally friendly, operational and cost-effective solubilizers. That is why support from theoretical screening seems to be valuable. Here, a collection of acetaminophen and phenacetin solubility data in neat and binary solvent mixtures was used for the development of a nonlinear deep machine learning model using new intuitive molecular descriptors derived from COSMO-RS computations. The literature dataset was augmented with results of new measurements in aqueous binary mixtures of 4-formylmorpholine, DMSO and DMF. The solubility values back-computed with the developed ensemble of neural networks are in perfect agreement with the experimental data, which enables the extensive screening of many combinations of solvents not studied experimentally within the applicability domain of the trained model. The final predictions were presented not only in the form of the set of optimal hyperparameters but also in a more intuitive way by the set of parameters of the Jouyban-Acree equation often used in the co-solvency domain. This new and effective approach is easily extendible to other systems, enabling the fast and reliable selection of candidates for new solvents and directing the experimental solubility screening of active pharmaceutical ingredients.
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5
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Behboudi E, Soleymani J, Martinez F, Jouyban A. Solubility of amlodipine besylate in binary mixtures of polyethylene glycol 400 + water at various temperatures: Measurement and modelling. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118394] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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6
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Ahn B, Bosetti L, Mazzotti M. Accounting for the Presence of Molecular Clusters in Modeling and Interpreting Nucleation and Growth. CRYSTAL GROWTH & DESIGN 2022; 22:661-672. [PMID: 35024005 PMCID: PMC8739834 DOI: 10.1021/acs.cgd.1c01193] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 11/30/2021] [Indexed: 06/02/2023]
Abstract
The effect of molecular cluster formation on the estimation of kinetic parameters for primary nucleation and growth in different systems has been studied using computationally generated data and three sets of experimental data in the literature. It is shown that the formation of molecular clusters decreases the concentration of monomers and hence the thermodynamic driving force for crystallization, which consequently affects the crystallization kinetics. For a system exhibiting a strong tendency to form molecular clusters, accounting for cluster formation in a kinetic model is critical to interpret kinetic data accurately, for instance, to estimate the specific surface energy γ from a set of primary nucleation rates. On the contrary, for a system with negligible cluster formation, a consideration of cluster formation does not affect parameter estimation outcomes. Moreover, it is demonstrated that using a growth kinetic model that accounts for cluster formation allows the estimation of γ from typical growth kinetic data (i.e., de-supersaturation profiles of seeded batch crystallization), which is a novel method of estimating γ developed in this work. The applicability of the novel method to different systems is proven by showing that the estimated values of γ are closely comparable to the actual values used for generating the kinetic data or the corresponding estimates reported in the literature.
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Affiliation(s)
- Byeongho Ahn
- Institute of Energy and Process
Engineering, ETH Zurich, 8092 Zurich, Switzerland
| | - Luca Bosetti
- Institute of Energy and Process
Engineering, ETH Zurich, 8092 Zurich, Switzerland
| | - Marco Mazzotti
- Institute of Energy and Process
Engineering, ETH Zurich, 8092 Zurich, Switzerland
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7
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Rahimpour E, Mazaher Haji Agha E, Martinez F, Barzegar-Jalali M, Jouyban A. Solubility study of acetaminophen in the mixtures of acetonitrile and water at different temperatures. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114708] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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8
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Romdhani A, Martínez F, Almanza OA, Jouyban A, Acree WE. Solubility of acetaminophen in (ethanol + propylene glycol + water) mixtures: Measurement, correlation, thermodynamics, and volumetric contribution at saturation. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.114065] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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9
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Bellucci MA, Gobbo G, Wijethunga TK, Ciccotti G, Trout BL. Solubility of paracetamol in ethanol by molecular dynamics using the extended Einstein crystal method and experiments. J Chem Phys 2019; 150:094107. [PMID: 30849885 DOI: 10.1063/1.5086706] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023] Open
Abstract
Li and co-workers [Li et al., J. Chem. Phys. 146, 214110 (2017)] have recently proposed a methodology to compute the solubility of molecular compounds from first principles, using molecular dynamics simulations. We revise and further explore their methodology that was originally applied to naphthalene in water at low concentration. In particular, we compute the solubility of paracetamol in an ethanol solution at ambient conditions. For the simulations, we used a force field that we previously reparameterized to reproduce certain thermodynamic properties of paracetamol but not explicitly its solubility in ethanol. In addition, we have determined the experimental solubility by performing turbidity measurements using a Crystal16 over a range of temperatures. Our work serves a dual purpose: (i) methodologically, we clarify how to compute, with a relatively straightforward procedure, the solubility of molecular compounds and (ii) applying this procedure, we show that the solubility predicted by our force field (0.085 ± 0.014 in mole ratio) is in good agreement with the experimental value obtained from our experiments and those reported in the literature (average 0.0585 ± 0.004), considering typical deviations for predictions from first principle methods. The good agreement between the experimental and the calculated solubility also suggests that the method used to reparameterize the force field can be used as a general strategy to optimize force fields for simulations in solution.
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Affiliation(s)
- Michael A Bellucci
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Gianpaolo Gobbo
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Tharanga K Wijethunga
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | | | - Bernhardt L Trout
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
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Hatefi A, Jouyban A, Mohammadian E, Acree WE, Rahimpour E. Prediction of paracetamol solubility in cosolvency systems at different temperatures. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2018.10.031] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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11
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Singh S, Talukdar M, Dash UN. Ultrasonic studies on paracetamol in aqueous solutions of sodium salicylate and nicotinamide. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2017.11.099] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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12
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Khan K, Badshah SL, Ahmad N, Rashid HU, Mabkhot Y. Inclusion Complexes of a New Family of Non-Ionic Amphiphilic Dendrocalix[4]arene and Poorly Water-Soluble Drugs Naproxen and Ibuprofen. Molecules 2017; 22:molecules22050783. [PMID: 28492508 PMCID: PMC6154630 DOI: 10.3390/molecules22050783] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2017] [Revised: 05/09/2017] [Accepted: 05/09/2017] [Indexed: 11/16/2022] Open
Abstract
The inclusion complexes of a new family of nonionic amphiphilic calix[4]arenes with the anti-inflammatory hydrophobic drugs naproxen (NAP) and ibuprofen (IBP) were investigated. The effects of the alkyl chain’s length and the inner core of calix[4]arenes on the interaction of the two drugs with the calix[4]arenes were explored. The inclusion complexes of Amphiphiles 1a–c with NAP and IBP increased the solubility of these drugs in aqueous media. The interaction of 1a–c with the drugs in aqueous media was investigated through fluorescence, molecular modeling, and 1H-NMR analysis. TEM studies further supported the formation of inclusion complexes. The length of lipophilic alkyl chains and the intrinsic cyclic nature of cailx[4]arene derivatives 1a–c were found to have a significant impact on the solubility of NAP and IBP in pure water.
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Affiliation(s)
- Khalid Khan
- Department of Chemistry, Islamia College University, Peshawar 25120, Khyber Pukhtunkhwa, Pakistan.
| | - Syed Lal Badshah
- Department of Chemistry, Islamia College University, Peshawar 25120, Khyber Pukhtunkhwa, Pakistan.
| | - Nasir Ahmad
- Department of Chemistry, Islamia College University, Peshawar 25120, Khyber Pukhtunkhwa, Pakistan.
| | - Haroon Ur Rashid
- Department of Chemistry, Sarhad University of Science and Technology, Peshawar 25120, Khyber Pukhtunkhwa, Pakistan.
| | - Yahia Mabkhot
- Department of Chemistry, College of Science, King Saud University, Riyadh 11495, Saudi Arabia.
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13
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Ghanbari A, SArbaz Y, Jouyban-Gharamaleki V, Jouyban-Gharamaleki K, Soleymani J, Jouyban A. An Improved Automated Setup for Solubility Determination of Drugs. PHARMACEUTICAL SCIENCES 2016. [DOI: 10.15171/ps.2016.33] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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14
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Muñoz MM, Rodríguez CJ, Delgado DR, Peña MÁ, Jouyban A, Martínez F. Solubility and saturation apparent specific volume of some sodium sulfonamides in propylene glycol + water mixtures at 298.15 K. J Mol Liq 2015. [DOI: 10.1016/j.molliq.2015.07.016] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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15
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Jouyban-Gharamaleki V, Jouyban-Gharamaleki K, Shayanfar A, Khoubnasabjafari M, Jouyban A. An Automated System for Determining Drug Solubility Based on Laser Monitoring Technique. ACTA ACUST UNITED AC 2015; 20:3-9. [DOI: 10.1177/2211068214554801] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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16
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Chahiyan H, Gharib F, Farajtabar A. Thermodynamic studies on solubility and protonation constant of acetaminophen at different ionic strengths and various temperatures. J Mol Liq 2014. [DOI: 10.1016/j.molliq.2014.08.033] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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17
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Filippa MA, Gasull EI. Experimental determination of Naproxen solubility in organic solvents and aqueous binary mixtures: Interactions and thermodynamic parameters relating to the solvation process. J Mol Liq 2014. [DOI: 10.1016/j.molliq.2014.06.031] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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18
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Vahdati S, Shayanfar A, Hanaee J, Martínez F, Acree WE, Jouyban A. Solubility of Carvedilol in Ethanol + Propylene Glycol Mixtures at Various Temperatures. Ind Eng Chem Res 2013. [DOI: 10.1021/ie403054z] [Citation(s) in RCA: 186] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sahel Vahdati
- Biotechnology
Research Center, Tabriz University of Medical Sciences, Tabriz 51664, Iran
| | - Ali Shayanfar
- Students’
Research Committee, Tabriz University of Medical Sciences, Tabriz 51664, Iran
| | - Jalal Hanaee
- Drug
Applied Research Center and Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz 51664, Iran
- School
of Life Sciences, University of Bradford, Bradford BD7 1DP, U.K
| | - Fleming Martínez
- Grupo
de Investigaciones Farmacéutico-Fisicoquímicas, Departamento
de Farmacia, Universidad Nacional de Colombia, A.A. 14490, Bogotá D.C., Colombia
| | - William E. Acree
- Department
of Chemistry, University of North Texas, Denton, Texas 76203-5070, United States
| | - Abolghasem Jouyban
- Drug
Applied Research Center and Faculty of Pharmacy, Tabriz University of Medical Sciences, Tabriz 51664, Iran
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19
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Cantillo EA, Delgado DR, Martinez F. Solution thermodynamics of indomethacin in ethanol+propylene glycol mixtures. J Mol Liq 2013. [DOI: 10.1016/j.molliq.2013.02.008] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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20
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Hsieh CM, Lin ST. First-principles prediction of phase equilibria using the PR + COSMOSAC equation of state. ASIA-PAC J CHEM ENG 2011. [DOI: 10.1002/apj.608] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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21
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Rodríguez SJ, Cristancho DM, Neita PC, Vargas EF, Martínez F. Solution Thermodynamics of Ethylhexyl Triazone in Some Ethanol + Ethyl Acetate Mixtures. J SOLUTION CHEM 2010. [DOI: 10.1007/s10953-010-9575-0] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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22
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Mota FL, Carneiro AP, Queimada AJ, Pinho SP, Macedo EA. Temperature and solvent effects in the solubility of some pharmaceutical compounds: Measurements and modeling. Eur J Pharm Sci 2009; 37:499-507. [DOI: 10.1016/j.ejps.2009.04.009] [Citation(s) in RCA: 91] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2009] [Revised: 04/17/2009] [Accepted: 04/19/2009] [Indexed: 10/20/2022]
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23
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Manrique YJ, Pacheco DP, Martínez F. Thermodynamics of Mixing and Solvation of Ibuprofen and Naproxen in Propylene Glycol + Water Cosolvent Mixtures. J SOLUTION CHEM 2007. [DOI: 10.1007/s10953-007-9228-0] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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