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Georgiadou EC, Mina M, Neoptolemou V, Koundouras S, D'Onofrio C, Bellincontro A, Mencarelli F, Fotopoulos V, Manganaris GA. The beneficial effect of leaf removal during fruit set on physiological, biochemical, and qualitative indices and volatile organic compound profile of the Cypriot reference cultivar 'Xynisteri'. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2023; 103:3776-3786. [PMID: 36226589 DOI: 10.1002/jsfa.12268] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2022] [Revised: 10/08/2022] [Accepted: 10/13/2022] [Indexed: 05/03/2023]
Abstract
BACKGROUND 'Xynisteri' is the reference Cypriot white cultivar that, despite its significant societal and economic impact, is poorly characterized regarding its qualitative properties, while scarce information exists regarding its aroma profile. In the current study, the effect of leaf removal during fruit set (BBCH 71) on 6-year cordon-trained, spur-pruned grapevines was assessed and an array of physiological, biochemical, and qualitative indices were monitored during successive developmental stages (BBCH 75, BBCH 85, BBCH 87, and BBCH 89). Grapes were additionally monitored for the volatile organic compounds (VOCs) profile during the advanced on-vine developmental stages (BBCH 85-BBCH 89) with the employment of gas chromatography-mass spectrometry (GC-MS), Fourier-transform near infrared (FT-NIR) spectra and electronic nose (E-nose) techniques. RESULTS Grape berries from the vines subjected to leaf removal were characterized by higher solid soluble sugars (SSC), titratable acidity (TA), tartaric acid, and ammonium nitrogen contents, while this was not the case for assimilable amino nitrogen (primary amino nitrogen). A total of 75 compounds were identified and quantified, including aliphatic alcohols, benzenic compounds, phenols, vanillins, monoterpenes, and C13 -norisoprenoids. Leaf removal led to enhanced amounts of glycosylated aroma compounds, mainly monoterpenes, and C13 -norisoprenoids. Chemometric analysis, used through FT-NIR and E-nose, showed that the aromatic patterns detected were well associated to the grape ripening trend and differences between leaf removal-treated and control grapes were detectable during fully ripe stage. CONCLUSION Leaf removal at fruit set resulted in an overall induction of secondary metabolism, with special reference to glycosylated aroma compounds, namely monoterpenes and C13 -norisoprenoids. © 2022 The Authors. Journal of The Science of Food and Agriculture published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
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Affiliation(s)
- Egli C Georgiadou
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol, Cyprus
- Kyperounda Winery, P. Photiades Group, Limassol, Cyprus
| | - Minas Mina
- Kyperounda Winery, P. Photiades Group, Limassol, Cyprus
| | - Varnavas Neoptolemou
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol, Cyprus
| | - Stefanos Koundouras
- Laboratory of Viticulture, School of Agriculture, Aristotle University of Thessaloniki, Thessaloniki, Greece
| | - Claudio D'Onofrio
- Department of Agriculture, Food and Environment Science, University of Pisa, Pisa, Italy
- Nutraceuticals and Food for Health - Nutrafood, University of Pisa, Pisa, Italy
| | - Andrea Bellincontro
- Department for Innovation in Biological, Agro-food and Forest Systems (DIBAF) - Postharvest Laboratory, University of Tuscia, Viterbo, Italy
| | - Fabio Mencarelli
- Department of Agriculture, Food and Environment Science, University of Pisa, Pisa, Italy
- Nutraceuticals and Food for Health - Nutrafood, University of Pisa, Pisa, Italy
| | - Vasileios Fotopoulos
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol, Cyprus
| | - George A Manganaris
- Department of Agricultural Sciences, Biotechnology and Food Science, Cyprus University of Technology, Limassol, Cyprus
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Li B, Gschwend AR, Hovick SM, Gutek A, McHale L, Harrison SK, Regnier EE. Evolution of weedy giant ragweed ( Ambrosia trifida): Multiple origins and gene expression variability facilitates weediness. Ecol Evol 2022; 12:e9590. [PMID: 36514541 PMCID: PMC9731915 DOI: 10.1002/ece3.9590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2022] [Accepted: 11/16/2022] [Indexed: 12/13/2022] Open
Abstract
Agricultural weeds may originate from wild populations, but the origination patterns and genetics underlying this transition remain largely unknown. Analysis of weedy-wild paired populations from independent locations may provide evidence to identify key genetic variation contributing to this adaptive shift. We performed genetic variation and expression analyses on transcriptome data from 67 giant ragweed samples collected from different locations in Ohio, Iowa, and Minnesota and found geographically separated weedy populations likely originated independently from their adjacent wild populations, but subsequent spreading of weedy populations also occurred locally. By using eight closely related weedy-wild paired populations, we identified thousands of unique transcripts in weedy populations that reflect shared or specific functions corresponding, respectively, to both convergently evolved and population-specific weediness processes. In addition, differential expression of specific groups of genes was detected between weedy and wild giant ragweed populations using gene expression diversity and gene co-expression network analyses. Our study suggests an integrated route of weedy giant ragweed origination, consisting of independent origination combined with the subsequent spreading of certain weedy populations, and provides several lines of evidence to support the hypothesis that gene expression variability plays a key role in the evolution of weedy species.
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Affiliation(s)
- Bo Li
- Department of Horticulture and Crop SciencesThe Ohio State UniversityColumbusOhioUSA
| | - Andrea R. Gschwend
- Department of Horticulture and Crop SciencesThe Ohio State UniversityColumbusOhioUSA
| | - Stephen M. Hovick
- Department of Evolution, Ecology and Organismal BiologyThe Ohio State UniversityColumbusOhioUSA
| | - Amanda Gutek
- Department of Horticulture and Crop SciencesThe Ohio State UniversityColumbusOhioUSA
| | - Leah McHale
- Department of Horticulture and Crop SciencesThe Ohio State UniversityColumbusOhioUSA
| | - S. Kent Harrison
- Department of Horticulture and Crop SciencesThe Ohio State UniversityColumbusOhioUSA
| | - Emilie E. Regnier
- Department of Horticulture and Crop SciencesThe Ohio State UniversityColumbusOhioUSA
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Pilati S, Malacarne G, Navarro-Payá D, Tomè G, Riscica L, Cavecchia V, Matus JT, Moser C, Blanzieri E. Vitis OneGenE: A Causality-Based Approach to Generate Gene Networks in Vitis vinifera Sheds Light on the Laccase and Dirigent Gene Families. Biomolecules 2021; 11:1744. [PMID: 34944388 PMCID: PMC8698957 DOI: 10.3390/biom11121744] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Revised: 11/11/2021] [Accepted: 11/16/2021] [Indexed: 12/24/2022] Open
Abstract
The abundance of transcriptomic data and the development of causal inference methods have paved the way for gene network analyses in grapevine. Vitis OneGenE is a transcriptomic data mining tool that finds direct correlations between genes, thus producing association networks. As a proof of concept, the stilbene synthase gene regulatory network obtained with OneGenE has been compared with published co-expression analysis and experimental data, including cistrome data for MYB stilbenoid regulators. As a case study, the two secondary metabolism pathways of stilbenoids and lignin synthesis were explored. Several isoforms of laccase, peroxidase, and dirigent protein genes, putatively involved in the final oxidative oligomerization steps, were identified as specifically belonging to either one of these pathways. Manual curation of the predicted sequences exploiting the last available genome assembly, and the integration of phylogenetic and OneGenE analyses, identified a group of laccases exclusively present in grapevine and related to stilbenoids. Here we show how network analysis by OneGenE can accelerate knowledge discovery by suggesting new candidates for functional characterization and application in breeding programs.
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Affiliation(s)
- Stefania Pilati
- Research and Innovation Centre, Department of Genomics and Biology of Fruit Crops, Fondazione Edmund Mach, 38098 San Michele all’Adige, Italy; (G.M.); (C.M.)
| | - Giulia Malacarne
- Research and Innovation Centre, Department of Genomics and Biology of Fruit Crops, Fondazione Edmund Mach, 38098 San Michele all’Adige, Italy; (G.M.); (C.M.)
| | - David Navarro-Payá
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, 46908 Paterna, Valencia, Spain; (D.N.-P.); (J.T.M.)
| | - Gabriele Tomè
- Centre for Integrative Biology (CIBIO), University of Trento, 38123 Trento, Italy;
| | - Laura Riscica
- Department of Information Engineering and Computer Science, University of Trento, 38123 Trento, Italy; (L.R.); (E.B.)
| | - Valter Cavecchia
- CNR-Institute of Materials for Electronics and Magnetism, 38123 Trento, Italy;
| | - José Tomás Matus
- Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, 46908 Paterna, Valencia, Spain; (D.N.-P.); (J.T.M.)
| | - Claudio Moser
- Research and Innovation Centre, Department of Genomics and Biology of Fruit Crops, Fondazione Edmund Mach, 38098 San Michele all’Adige, Italy; (G.M.); (C.M.)
| | - Enrico Blanzieri
- Department of Information Engineering and Computer Science, University of Trento, 38123 Trento, Italy; (L.R.); (E.B.)
- CNR-Institute of Materials for Electronics and Magnetism, 38123 Trento, Italy;
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