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Li W, Zhao T. Borophene as an carrier for mercaptopurine drug: electronic study via density-functional theory computations. J Mol Model 2023; 29:325. [PMID: 37747575 DOI: 10.1007/s00894-023-05724-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 09/11/2023] [Indexed: 09/26/2023]
Abstract
CONTEXT This paper studied MP-B36 interactions through DFT. MP molecules were observed to have a substantial tendency to be adsorbed through their N heads onto B36 at its edge, based on large adsorption energy values. The B atoms at the edges of B36 nanosheets showed higher reactivity than the internal B atoms toward MP. The electronic properties changed upon MP adsorption. The MP-B36 configurations of the highest stability underwent an energy gap reduction of 11-47%. Natural bond orbital (NBO) analysis and molecular electrostatic potential (MEP) analysis were used to evaluate the MP-B36 interaction. METHODS The configurations were subjected to geometric optimization at the TPSSH/6-31 + G(d) level of theory, at which frequency analysis was carried out to evaluate the stationary points. These configurations were neutral (Q = 0). The electronic properties of MP dramatically changed upon its interaction with B36 nanosheets. The stable configurations underwent an energy gap reduction, suggesting a chemical signal. The MP molecules were observed to be effectively adsorbed onto the B36 edge within aqueous phases. The MP-B36 configurations were estimated to have relatively large dipole moments. This demonstrated that MP-B36 systems were soluble and dispersed within solar media (e.g., water). It was concluded that B36 nanosheets could serve as efficient MP carriers in nanomedical drug delivery applications.
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Affiliation(s)
- Wei Li
- Department of Pharmacy, Renmin Hospital, Hubei University of Medicine, Shiyan, Hubei, 442000, P.R. China
| | - Tinghu Zhao
- Department of Orthopaedics, Renmin Hospital, Hubei University of Medicine, Shiyan, Hubei, 442000, P.R. China.
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Jia R, Yang X, Li H, Jin B, Xu K. Interaction between cis-2 bis(benzofuro)[60]fullerene derivative and gas molecules of energetic materials (NO, NO2, N2, CO, CO2 and HCN): A DFT-D study. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2022.113690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Guerra C, Kumar S, Aguilar-Galindo F, Díaz-Tendero S, Lozano AI, Mendes M, Oller JC, Limão-Vieira P, García G. Total Electron Detachment and Induced Cationic Fragmentation Cross Sections for Superoxide Anion (O 2-) Collisions with Benzene (C 6H 6) Molecules. Int J Mol Sci 2022; 23:ijms23031266. [PMID: 35163189 PMCID: PMC8835784 DOI: 10.3390/ijms23031266] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 01/17/2022] [Accepted: 01/21/2022] [Indexed: 02/06/2023] Open
Abstract
In this study, novel experimental total electron detachment cross sections for O2- collisions with benzene molecules are reported for the impact energy range (10-1000 eV), as measured with a transmission beam apparatus. By analysing the positively charged species produced during the collision events, relative total ionisation cross sections were derived in the incident energy range of 160-900 eV. Relative partial ionisation cross sections for fragments with m/z ≤ 78 u were also given in this energy range. We also confirmed that heavier compounds (m/z > 78 u) formed for impact energies between 550 and 800 eV. In order to further our knowledge about the collision dynamics governing the fragmentation of such heavier molecular compounds, we performed molecular dynamics calculations within the framework of the Density Functional Theory (DFT). These results demonstrated that the fragmentation of these heavier compounds strongly supports the experimental evidence of m/z = 39-42, 50, 60 (u) cations formation, which contributed to the broad local maximum in the total ionisation observed from 550 to 800 eV. This work reveals the reactivity induced by molecular anions colliding with hydrocarbons at high energies, processes that can take place in the interstellar medium under various local conditions.
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Affiliation(s)
- Carlos Guerra
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Serrano 113-bis, 28006 Madrid, Spain;
| | - Sarvesh Kumar
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal; (S.K.); (A.I.L.); (M.M.); (P.L.-V.)
| | - Fernando Aguilar-Galindo
- Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 4, 20018 Donostia-San Sebastián, Spain;
| | - Sergio Díaz-Tendero
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Condensed Matter Physics Center (IFIMAC), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Institute for Advanced Research in Chemical Science (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
- Correspondence: (S.D.-T.); (G.G.)
| | - Ana I. Lozano
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal; (S.K.); (A.I.L.); (M.M.); (P.L.-V.)
| | - Mónica Mendes
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal; (S.K.); (A.I.L.); (M.M.); (P.L.-V.)
| | - Juan C. Oller
- Centro de Investigaciones Energéticas Medioambientales y Tecnológicas (CIEMAT), Avenida Complutense 22, 28040 Madrid, Spain;
| | - Paulo Limão-Vieira
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal; (S.K.); (A.I.L.); (M.M.); (P.L.-V.)
| | - Gustavo García
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas, Serrano 113-bis, 28006 Madrid, Spain;
- Centre for Medical Radiation Physics, University of Wollongong, Wollomgong, NSW 2522, Australia
- Correspondence: (S.D.-T.); (G.G.)
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Vergara-Reyes HN, Acosta-Alejandro M, Chigo-Anota E. Quantum-mechanical assessment of the adsorption of nitric oxide molecules on the magnetic carbon nitride (C36N24)− fullerene. Struct Chem 2021. [DOI: 10.1007/s11224-021-01736-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Quasi-planar B 36 boron cluster: a new potential basis for ammonia detection. J Mol Model 2020; 26:263. [PMID: 32909082 DOI: 10.1007/s00894-020-04486-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2020] [Accepted: 07/27/2020] [Indexed: 10/23/2022]
Abstract
Detection of NH3 at a trace level is nowadays of great importance. Here, we investigate the reactivity and sensitivity of a B36 borophene toward NH3 gas employing DFT calculations. The energetic results point out that the adsorption process strongly depends on the orientation of NH3 relative to the B36 sheet. An NH3 molecule preferentially interacts via its N-head with a B atom of the B36 with a change of enthalpy of - 90.5 kJ/mol at room temperature and 1 atm. Mulliken charges analysis results reveal that approximately 0.35 |e| transfers from NH3 to the B36, leaving partially positive NH3. We found that the B36 electronic properties are meaningfully sensitive to the NH3 gas, and it may be a sign of further usage of B36 as a potential NH3 gas sensor. The density of state analysis shows that the B36 gap is expressively decreased from 1.55 to 1.35 eV, increasing its electrical conductance.
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Liu Y, Liu C, Kumar A. A selective NO sensor based on the semiconducting BC2N nanotubes: a computational study. Mol Phys 2020. [DOI: 10.1080/00268976.2020.1798528] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Yongqiu Liu
- Guangdong University of Science & Technology, Dongguan, People’s Republic of China
| | - Chao Liu
- Guangdong University of Science & Technology, Dongguan, People’s Republic of China
| | - Ajit Kumar
- Chemistry Department, University of Delhi, Delhi, India
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Nagarajan V, Chandiramouli R. A study on quercetin and 5-fluorouracil drug interaction on graphyne nanosheets and solvent effects — A first-principles study. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2018.11.083] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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Interplay of thermochemistry and Structural Chemistry, the journal (volume 28, 2017, issues 5–6), and the discipline. Struct Chem 2018. [DOI: 10.1007/s11224-018-1217-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Srimathi U, Nagarajan V, Chandiramouli R. Interaction of Imuran, Pentasa and Hyoscyamine drugs and solvent effects on graphdiyne nanotube as a drug delivery system - A DFT study. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.05.114] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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Anota EC, Villanueva MS, Shakerzadeh E, Castro M. Adsorption and possible dissociation of glucose by the [BN fullerene-B6]− magnetic nanocomposite. In silico studies. APPLIED NANOSCIENCE 2018. [DOI: 10.1007/s13204-018-0664-5] [Citation(s) in RCA: 69] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Cano Ordaz J, Chigo Anota E, Salazar Villanueva M, Castro M. Possibility of a magnetic [BN fullerene:B6 cluster]− nanocomposite as a vehicle for the delivery of dapsone. NEW J CHEM 2017. [DOI: 10.1039/c7nj01133d] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
The dapsone interacting weakly with BNF (a) and functionalized BNF (b). Magnetism is induced in the molecule (c) by the BNF.
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Affiliation(s)
- J. Cano Ordaz
- Benemérita Universidad Autónoma de Puebla
- Facultad de Ingeniería Química
- Ciudad Universitaria
- Puebla
- Mexico
| | - E. Chigo Anota
- Benemérita Universidad Autónoma de Puebla
- Facultad de Ingeniería Química
- Ciudad Universitaria
- Puebla
- Mexico
| | - M. Salazar Villanueva
- Benemérita Universidad Autónoma de Puebla
- Facultad de Ingeniería
- Apdo. Postal J-39
- Puebla
- Mexico
| | - M. Castro
- Universidad Nacional Autónoma de México-Departamento de Física y Química Teórica
- DEPg-Facultad de Química
- México D.F
- Mexico
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