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Vaidya SR, Kulkarni AS, Bhattad DR, Raut CG. Revealing true diversity of measles viruses circulating in India, 2012–17. J Infect 2019; 79:277-287. [DOI: 10.1016/j.jinf.2019.05.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2019] [Revised: 05/08/2019] [Accepted: 05/11/2019] [Indexed: 10/26/2022]
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Vaidya SR, Kamble MB, Kumbhar NS. Laboratory‐based investigation of fever with rash cases in the Maharashtra State ‐ India, 2014 to 2017. J Med Virol 2019; 91:972-978. [DOI: 10.1002/jmv.25407] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2018] [Revised: 01/18/2019] [Accepted: 01/20/2019] [Indexed: 11/06/2022]
Affiliation(s)
- Sunil R. Vaidya
- Measles GroupICMR‐National Institute of VirologyPune Maharashtra India
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Cherian SS, Walimbe AM, Moolpani K, Shirode A, Vaidya SR. Global spatiotemporal transmission dynamics of measles virus clade D genotypes in the context of the measles elimination goal 2020 in India. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2018; 66:37-42. [PMID: 30219321 DOI: 10.1016/j.meegid.2018.09.007] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 08/22/2018] [Accepted: 09/12/2018] [Indexed: 01/19/2023]
Abstract
Measles viruses (MeV) circulating in India mainly belong to genoypes D4 and D8 of clade D. In the context of measles elimination goal 2020 in India, molecular clock and phylogeography studies would help to identify the timescales of evolution and track the transmission pathways of MeV. We used nucleoprotein gene sequences (n = 756) from GenBank, representing 86 countries (1973-2016), to study the spatiotemporal transmission dynamics of clade D. Genotype D4 was introduced into India around 1991 and genotype D8 around 1994. Recent transmissions of the D4 genotype of measles virus (MeV) were noted from India to the United States of America and East Asia region while D8 genotype importations from North America were noted in recent years.
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Affiliation(s)
| | - A M Walimbe
- National Institute of Virology, Pune, Maharashtra, India
| | - Karan Moolpani
- National Institute of Virology, Pune, Maharashtra, India
| | - Amruta Shirode
- National Institute of Virology, Pune, Maharashtra, India
| | - Sunil R Vaidya
- National Institute of Virology, Pune, Maharashtra, India
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Vaidya SR, Kamble MB, Chowdhury DT, Kumbhar NS. Measles & rubella outbreaks in Maharashtra State, India. Indian J Med Res 2017; 143:227-31. [PMID: 27121521 PMCID: PMC4859132 DOI: 10.4103/0971-5916.180214] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Background & objectives: Under the outbreak-based measles surveillance in Maharashtra State the National Institute of Virology at Pune receives 3-5 serum samples from each outbreak and samples from the local hospitals in Pune for laboratory diagnosis. This report describes one year data on the measles and rubella serology, virus isolation and genotyping. Methods: Maharashtra State Health Agencies investigated 98 suspected outbreaks between January-December 2013 in the 20 districts. Altogether, 491 serum samples were received from 20 districts and 126 suspected cases from local hospitals. Samples were tested for the measles and rubella IgM antibodies by commercial enzyme immunoassay (EIA). To understand the diagnostic utility, a subset of serum samples (n=53) was tested by measles focus reduction neutralization test (FRNT). Further, 37 throat swabs and 32 urine specimens were tested by measles reverse transcription (RT)-PCR and positive products were sequenced. Virus isolation was performed in Vero hSLAM cells. Results: Of the 98 suspected measles outbreaks, 61 were confirmed as measles, 12 as rubella and 21 confirmed as the mixed outbreaks. Four outbreaks remained unconfirmed. Of the 126 cases from the local hospitals, 91 were confirmed for measles and three for rubella. Overall, 93.6 per cent (383/409) confirmed measles cases were in the age group of 0-15 yr. Measles virus was detected in 18 of 38 specimens obtained from the suspected cases. Sequencing of PCR products revealed circulation of D4 (n=9) and D8 (n=9) strains. Four measles viruses (three D4 & one D8) were isolated. Interpretation & conclusions: Altogether, 94 measles and rubella outbreaks were confirmed in 2013 in the State of Maharasthra indicating the necessity to increase measles vaccine coverage in the State.
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Affiliation(s)
- Sunil R Vaidya
- WHO Accredited National Measles Reference Laboratory, National Institute of Virology (ICMR), Pune, India
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Kulkarni RD, Ajantha G, Kiran AR, Pravinchandra K. Global Eradication of Measles: Are We Poised? Indian J Med Microbiol 2017; 35:10-16. [PMID: 28303812 DOI: 10.4103/ijmm.ijmm_16_233] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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Vaidya SR, Chowdhury DT. Measles virus genotypes circulating in India, 2011-2015. J Med Virol 2016; 89:753-758. [DOI: 10.1002/jmv.24702] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/27/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Sunil R. Vaidya
- World Health Organization Accredited National Reference Laboratory for Measles and Rubella; National Institute of Virology [Indian Council of Medical Research]; Pune Maharashtra India
| | - Deepika T. Chowdhury
- World Health Organization Accredited National Reference Laboratory for Measles and Rubella; National Institute of Virology [Indian Council of Medical Research]; Pune Maharashtra India
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Kuttiatt VS, Kalpathodi S, Gangadharan ST, Kailas L, Sreekumar E, Sukumaran SM, Nair RR. Detection of measles virus genotype B3, India. Emerg Infect Dis 2015; 20:1764-6. [PMID: 25272247 PMCID: PMC4193266 DOI: 10.3201/eid2010.130742] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
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Identification of different lineages of measles virus strains circulating in Uttar Pradesh, North India. Virol J 2012; 9:237. [PMID: 23072489 PMCID: PMC3544691 DOI: 10.1186/1743-422x-9-237] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2012] [Accepted: 09/14/2012] [Indexed: 11/15/2022] Open
Abstract
Background Genetic analysis of measles viruses associated with recent cases and outbreaks has proven to bridge information gaps in routine outbreak investigations and has made a substantial contribution to measles control efforts by helping to identify the transmission pathways of the virus. Materials and methods The present study describes the genetic characterization of wild type measles viruses from Uttar Pradesh, India isolated between January 2008 and January 2011. In the study, 526 suspected measles cases from 15 outbreaks were investigated. Blood samples were collected from suspected measles outbreaks and tested for the presence of measles specific IgM; throat swab and urine samples were collected for virus isolation and RT-PCR. Genotyping of circulating measles viruses in Uttar Pradesh was performed by sequencing a 450-bp region encompassing the nucleoprotein hypervariable region and phylogenetic analysis. Results and conclusion Based on serological results, all the outbreaks were confirmed as measles. Thirty eight strains were obtained. Genetic analysis of circulating measles strains (n = 38) in Uttar Pradesh from 235 cases of laboratory-confirmed cases from 526 suspected measles cases between 2008 and 2011 showed that all viruses responsible for outbreaks were within clade D and all were genotype D8. Analysis of this region showed that it is highly divergent (up to 3.4% divergence in the nucleotide sequence and 4.1% divergence in the amino acid sequence between most distant strains). Considerable genetic heterogeneity was observed in the MV genotype D8 viruses in North India and underscores the need for continued surveillance and in particular increases in vaccination levels to decrease morbidity and mortality attributable to measles.
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Pattamadilok S, Incomserb P, Primsirikunawut A, Lukebua A, Rota PA, Sawanpanyalert P. Genetic characterization of measles viruses that circulated in Thailand from 1998 to 2008. J Med Virol 2012; 84:804-13. [PMID: 22431030 DOI: 10.1002/jmv.23249] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
During the period between 1998 and 2008, 48 representative measles viruses (MeVs) circulating in Thailand were subjected to genetic characterization. Three genotypes, G2, D5, and D9 were detected. The results suggested that measles genotype D5, which has been circulating since at least 1998, is the endemic genotype in Thailand. Genotype G2 was detected between 1998 and 2001. In addition, almost all of the MeVs detected throughout the country in 2008 were genotype D9. This is the first report of genotype D9 in Thailand. This report provides important baseline data about measles genotypes in Thailand and this information will be needed to help verify measles elimination in Thailand.
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Affiliation(s)
- Sirima Pattamadilok
- National Institute of Health, Department of Medical Sciences, Nonthaburi, Thailand.
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Epidemiology and genetic relatedness of measles virus infection in Uttar Pradesh, India, during 2009-2010. Arch Virol 2012; 157:723-731. [DOI: 10.1007/s00705-012-1227-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2011] [Accepted: 12/09/2011] [Indexed: 01/19/2023]
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Duraisamy R, Rota PA, Palani G, Elango V, Sambasivam M, Lowe L, Lopareva E, Ramamurty N. Molecular characterization of wild-type measles viruses in Tamil Nadu, India, during 2005-2006: Relationship of genotype D8 strains from Tamil Nadu to global strains. J Med Virol 2011; 84:348-57. [DOI: 10.1002/jmv.22244] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Wairagkar N, Chowdhury D, Vaidya S, Sikchi S, Shaikh N, Hungund L, Tomar RS, Biswas D, Yadav K, Mahanta J, Das VNR, Yergolkar P, Gunasekaran P, Raja D, Jadi R, Ramamurty N, Mishra AC. Molecular epidemiology of measles in India, 2005-2010. J Infect Dis 2011; 204 Suppl 1:S403-13. [PMID: 21666192 DOI: 10.1093/infdis/jir150] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Measles is a childhood disease that causes great morbidity and mortality in India and worldwide. Because measles surveillance in India is in its infancy, there is a paucity of countrywide data on circulating Measles virus genotypes. This study was conducted in 21 of 28 States and 2 of 7 Union Territories of India by MeaslesNetIndia, a national network of 27 centers and sentinel practitioners. MeaslesNetIndia investigated 52 measles outbreaks in geographically representative areas from 2005 through June 2010. All outbreaks were serologically confirmed by detection of antimeasles virus immunoglobulin M (IgM) antibodies in serum or oral fluid samples. Molecular studies, using World Health Organization (WHO)-recommended protocols obtained 203 N-gene, 40 H-gene, and 4 M-gene sequences during this period. Measles genotypes D4, D7, and D8 were found to be circulating in various parts of India during the study period. Further phylogenetic analysis revealed 4 lineages of Indian D8 genotypes: D8a, D8b, D8c, and D8d. This study generated a large, countrywide sequence database that can form the baseline for future molecular studies on measles virus transmission pathways in India. This study has created support and capabilities for countrywide measles molecular surveillance that must be carried forward.
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Affiliation(s)
- Niteen Wairagkar
- WHO Regional Measles Reference Laboratory, National Institute of Virology, Pune, India.
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Rota PA, Brown K, Mankertz A, Santibanez S, Shulga S, Muller CP, Hübschen JM, Siqueira M, Beirnes J, Ahmed H, Triki H, Al-Busaidy S, Dosseh A, Byabamazima C, Smit S, Akoua-Koffi C, Bwogi J, Bukenya H, Wairagkar N, Ramamurty N, Incomserb P, Pattamadilok S, Jee Y, Lim W, Xu W, Komase K, Takeda M, Tran T, Castillo-Solorzano C, Chenoweth P, Brown D, Mulders MN, Bellini WJ, Featherstone D. Global Distribution of Measles Genotypes and Measles Molecular Epidemiology. J Infect Dis 2011; 204 Suppl 1:S514-23. [DOI: 10.1093/infdis/jir118] [Citation(s) in RCA: 199] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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Rota PA, Featherstone DA, Bellini WJ. Molecular epidemiology of measles virus. Curr Top Microbiol Immunol 2009; 330:129-50. [PMID: 19203108 DOI: 10.1007/978-3-540-70617-5_7] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
Abstract
Genetic characterization of wild-type measles viruses provides a means to study the transmission pathways of the virus and is an essential component of laboratory-based surveillance. Laboratory-based surveillance for measles and rubella, including genetic characterization of wild-type viruses, is performed throughout the world by the WHO Measles and Rubella Laboratory Network, which serves 166 countries in all WHO regions. In particular, the genetic data can help confirm the sources of virus or suggest a source for unknown-source cases as well as to establish links, or lack thereof, between various cases and outbreaks. Virologic surveillance has helped to document the interruption of transmission of endemic measles in some regions. Thus, molecular characterization of measles viruses has provided a valuable tool for measuring the effectiveness of measles control programs, and virologic surveillance needs to be expanded in all areas of the world and conducted during all phases of measles control.
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Affiliation(s)
- P A Rota
- Measles, Mumps, Rubella and Herpesvirus Laboratory Branch, Centers for Disease Control and Prevention, Atlanta, GA, USA.
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Mahadevan A, Vaidya SR, Wairagkar NS, Khedekar D, Kovoor JM, Santosh V, Yasha T, Satishchandra P, Ravi V, Shankar S. Case of fulminant-SSPE associated with measles genotype D7 from India: An autopsy study. Neuropathology 2008; 28:621-6. [DOI: 10.1111/j.1440-1789.2008.00891.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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