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Imade EE, Omonigho SE, Babalola OO, Enagbonma BJ, Igiehon ON, Ogofure AG. Dataset of 16S ribosomal DNA sequence-based identification of bacteriocinogenic lactic acid bacteria isolated from fermented food samples. Data Brief 2024; 52:110021. [PMID: 38287954 PMCID: PMC10823100 DOI: 10.1016/j.dib.2023.110021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 12/04/2023] [Accepted: 12/27/2023] [Indexed: 01/31/2024] Open
Abstract
The dataset profiled in this research is built on sequencing of lactic acid bacteria 16S rDNA mined from Nono (N4 and N5), Kunu (K4 and K1) and Garri. The 16S rDNA sequences files are accessible under the data identification numbers: OK017047, OK017046, OK017044, OK017043, OK017045 at the GenBank database, NCBI. Taxonomic identification and phylogenetic tree analysis were done using the online BLAST (blastn) and MEGA11 software, respectively. The effect of the bacteriocin produced by these organisms on spoilage bacteria associated with salad was evaluated using an agar well diffusion assay. Limosilactobacillus pontis strain EOINONO, Limosilactobacillus pontis strain OGENONO, Limosilactobacillus pontis strain SEOGARI, Lactiplantibacillus plantarum strain MJIKUNU and Limosilactobacillus pontis strain EEIKUNU were the identified bacteriocinogenic organisms while Bacillus tequilensis strain SEOABACHA, Bacillus tequilensis strain EEIABACHA, Achromobacter xylosoxidans strain IMABACHA and Achromobacter insolitus strain MJIABACHA were the identified spoilage organisms.
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Affiliation(s)
- Emmanuel Edoghogho Imade
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Private Mail Bag 1154, Benin City, Edo State, Nigeria
| | - Solomon Esharegoma Omonigho
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Private Mail Bag 1154, Benin City, Edo State, Nigeria
| | - Olubukola Oluranti Babalola
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho 2735, South Africa
| | - Ben Jesuorsemwen Enagbonma
- Food Security and Safety Focus Area, Faculty of Natural and Agricultural Sciences, North-West University, Private Bag X2046, Mmabatho 2735, South Africa
- Department of Environmental Management and Toxicology, Faculty of Life Sciences, University of Benin, Private Mail Bag 1154, Benin City, Edo State, Nigeria
| | - Ozede Nicholas Igiehon
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Private Mail Bag 1154, Benin City, Edo State, Nigeria
| | - Abraham Goodness Ogofure
- Department of Microbiology, Faculty of Life Sciences, University of Benin, Private Mail Bag 1154, Benin City, Edo State, Nigeria
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Chen H, Sun X, He H, Ren H, Duan H, Zhang C, Chang Q, Zhang R, Ge J. Lysinibacillus capsici 38,328 isolated from agricultural soils as a promising probiotic candidate for intestinal health. Arch Microbiol 2023; 205:251. [PMID: 37249701 DOI: 10.1007/s00203-023-03593-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2023] [Revised: 05/06/2023] [Accepted: 05/21/2023] [Indexed: 05/31/2023]
Abstract
There is an increasing interest in the use of spore-forming Bacillus spp. as probiotic ingredients on the market. However, probiotics Bacillus species are insufficient, and more safe Bacillus species were required. In the study, traditional fermented foods and soil samples were collected from more than ten provinces in China, and 506 Bacillus were selected from 109 samples. Using the optimized procedure, we screened nine strains, which successfully passed the acid, alkali, bile salt, and trypsin resistance test. Drug sensitivity test results showed that three Bacillus out of the nine isolates exhibited antibiotic sensitivity to more than 29 antibiotics. The three strains sensitive to antibiotics were identified by 16S ribosomal RNA, recA, and gyrB gene analysis, two isolates (38,327 and 38,328) belong to the species Lysinibacillus capsici and one isolate (37,326) belong to Bacillus halotolerans. Moreover, the three strains were confirmed safe through animal experiments. Finally, L. capsici 38,327 and 38,328 showed protections in the Salmonella typhimurium infection mouse model, which slowed down weight loss, reduced bacterial load, and improved antioxidant capacity. Altogether, our data demonstrated that selected L. capsici strains can be used as novel probiotics for intestinal health.
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Affiliation(s)
- Huinan Chen
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China
| | - Xiaoyi Sun
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China
| | - Huilin He
- College of Animal Science and Technology, Northeast Agricultural University, Harbin, 150030, China
| | - Hongkun Ren
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China
| | - Haoyuan Duan
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China
| | - Chuankun Zhang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China
| | - Qingru Chang
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China
| | - Runxiang Zhang
- College of Animal Science and Technology, Northeast Agricultural University, Harbin, 150030, China.
| | - Junwei Ge
- College of Veterinary Medicine, Northeast Agricultural University, Harbin, 150030, China.
- Heilongjiang Provincial Key Laboratory of Zoonosis, Harbin, 150030, China.
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