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For: Greve DN, Brown GG, Mueller BA, Glover G, Liu TT. A survey of the sources of noise in fMRI. Psychometrika 2013;78:396-416. [PMID: 25106392 DOI: 10.1007/s11336-012-9294-0] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2011] [Revised: 03/07/2012] [Indexed: 06/03/2023]
Number Cited by Other Article(s)
1
Tuovinen T, Häkli J, Rytty R, Krüger J, Korhonen V, Järvelä M, Helakari H, Kananen J, Nikkinen J, Veijola J, Remes AM, Kiviniemi V. The relative brain signal variability increases in the behavioral variant of frontotemporal dementia and Alzheimer's disease but not in schizophrenia. J Cereb Blood Flow Metab 2024;44:1535-1549. [PMID: 38897598 PMCID: PMC11574935 DOI: 10.1177/0271678x241262583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Revised: 05/20/2024] [Accepted: 05/27/2024] [Indexed: 06/21/2024]
2
Ceja IFT, Gladytz T, Starke L, Tabelow K, Niendorf T, Reimann HM. Precision fMRI and cluster-failure in the individual brain. Hum Brain Mapp 2024;45:e26813. [PMID: 39185695 PMCID: PMC11345700 DOI: 10.1002/hbm.26813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2024] [Revised: 06/06/2024] [Accepted: 07/20/2024] [Indexed: 08/27/2024]  Open
3
Treves IN, Kucyi A, Park M, Kral TRA, Goldberg SB, Davidson RJ, Rosenkranz M, Whitfield-Gabrieli S, Gabrieli JDE. Connectome predictive modeling of trait mindfulness. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.09.602725. [PMID: 39026870 PMCID: PMC11257611 DOI: 10.1101/2024.07.09.602725] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
4
Nozari E, Bertolero MA, Stiso J, Caciagli L, Cornblath EJ, He X, Mahadevan AS, Pappas GJ, Bassett DS. Macroscopic resting-state brain dynamics are best described by linear models. Nat Biomed Eng 2024;8:68-84. [PMID: 38082179 PMCID: PMC11357987 DOI: 10.1038/s41551-023-01117-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Accepted: 09/26/2023] [Indexed: 12/22/2023]
5
Hoeppli ME, Garenfeld MA, Mortensen CK, Nahman‐Averbuch H, King CD, Coghill RC. Denoising task-related fMRI: Balancing noise reduction against signal loss. Hum Brain Mapp 2023;44:5523-5546. [PMID: 37753711 PMCID: PMC10619396 DOI: 10.1002/hbm.26447] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2022] [Revised: 07/14/2023] [Accepted: 07/26/2023] [Indexed: 09/28/2023]  Open
6
Achard S, Coeurjolly JF, de Micheaux PL, Lbath H, Richiardi J. Inter-regional correlation estimators for functional magnetic resonance imaging. Neuroimage 2023;282:120388. [PMID: 37805021 DOI: 10.1016/j.neuroimage.2023.120388] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 09/05/2023] [Accepted: 09/22/2023] [Indexed: 10/09/2023]  Open
7
Meschke EX, Castello MVDO, la Tour TD, Gallant JL. Model connectivity: leveraging the power of encoding models to overcome the limitations of functional connectivity. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.07.17.549356. [PMID: 37503232 PMCID: PMC10370105 DOI: 10.1101/2023.07.17.549356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
8
Morfini F, Whitfield-Gabrieli S, Nieto-Castañón A. Functional connectivity MRI quality control procedures in CONN. Front Neurosci 2023;17:1092125. [PMID: 37034165 PMCID: PMC10076563 DOI: 10.3389/fnins.2023.1092125] [Citation(s) in RCA: 17] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Accepted: 03/01/2023] [Indexed: 04/03/2023]  Open
9
Multi-Echo Investigations of Positive and Negative CBF and Concomitant BOLD Changes: Positive and negative CBF and BOLD changes. Neuroimage 2022;263:119661. [PMID: 36198353 DOI: 10.1016/j.neuroimage.2022.119661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 09/27/2022] [Accepted: 09/30/2022] [Indexed: 11/21/2022]  Open
10
Centeno EGZ, Moreni G, Vriend C, Douw L, Santos FAN. A hands-on tutorial on network and topological neuroscience. Brain Struct Funct 2022;227:741-762. [PMID: 35142909 PMCID: PMC8930803 DOI: 10.1007/s00429-021-02435-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Accepted: 11/23/2021] [Indexed: 02/08/2023]
11
Polimeni JR, Lewis LD. Imaging faster neural dynamics with fast fMRI: A need for updated models of the hemodynamic response. Prog Neurobiol 2021;207:102174. [PMID: 34525404 PMCID: PMC8688322 DOI: 10.1016/j.pneurobio.2021.102174] [Citation(s) in RCA: 46] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2020] [Revised: 07/30/2021] [Accepted: 09/08/2021] [Indexed: 12/20/2022]
12
Stickland RC, Zvolanek KM, Moia S, Ayyagari A, Caballero-Gaudes C, Bright MG. A practical modification to a resting state fMRI protocol for improved characterization of cerebrovascular function. Neuroimage 2021;239:118306. [PMID: 34175427 PMCID: PMC8552969 DOI: 10.1016/j.neuroimage.2021.118306] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2021] [Revised: 06/18/2021] [Accepted: 06/23/2021] [Indexed: 12/22/2022]  Open
13
Kumar R, Tan L, Kriegstein A, Lithen A, Polimeni JR, Mujica-Parodi LR, Strey HH. Ground-truth "resting-state" signal provides data-driven estimation and correction for scanner distortion of fMRI time-series dynamics. Neuroimage 2020;227:117584. [PMID: 33285328 DOI: 10.1016/j.neuroimage.2020.117584] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Revised: 11/13/2020] [Accepted: 11/18/2020] [Indexed: 10/22/2022]  Open
14
Wang L, Li C, Chen D, Lv X, Go R, Wu J, Yan T. Hemodynamic response varies across tactile stimuli with different temporal structures. Hum Brain Mapp 2020;42:587-597. [PMID: 33169898 PMCID: PMC7814760 DOI: 10.1002/hbm.25243] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 10/01/2020] [Accepted: 10/03/2020] [Indexed: 11/23/2022]  Open
15
Na S, Kolar M, Koyejo O. Estimating differential latent variable graphical models with applications to brain connectivity. Biometrika 2020. [DOI: 10.1093/biomet/asaa066] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
16
Alfaro-Almagro F, McCarthy P, Afyouni S, Andersson JLR, Bastiani M, Miller KL, Nichols TE, Smith SM. Confound modelling in UK Biobank brain imaging. Neuroimage 2020;224:117002. [PMID: 32502668 PMCID: PMC7610719 DOI: 10.1016/j.neuroimage.2020.117002] [Citation(s) in RCA: 109] [Impact Index Per Article: 27.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2020] [Revised: 05/08/2020] [Accepted: 05/25/2020] [Indexed: 01/19/2023]  Open
17
Liu TT, Falahpour M. Vigilance Effects in Resting-State fMRI. Front Neurosci 2020;14:321. [PMID: 32390792 PMCID: PMC7190789 DOI: 10.3389/fnins.2020.00321] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2019] [Accepted: 03/18/2020] [Indexed: 12/02/2022]  Open
18
The Roles of Statistics in Human Neuroscience. Brain Sci 2019;9:brainsci9080194. [PMID: 31398878 PMCID: PMC6721802 DOI: 10.3390/brainsci9080194] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Accepted: 07/27/2019] [Indexed: 11/20/2022]  Open
19
Eklund A, Knutsson H, Nichols TE. Cluster failure revisited: Impact of first level design and physiological noise on cluster false positive rates. Hum Brain Mapp 2019;40:2017-2032. [PMID: 30318709 PMCID: PMC6445744 DOI: 10.1002/hbm.24350] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 07/30/2018] [Accepted: 08/01/2018] [Indexed: 01/16/2023]  Open
20
Lewis LD, Setsompop K, Rosen BR, Polimeni JR. Stimulus-dependent hemodynamic response timing across the human subcortical-cortical visual pathway identified through high spatiotemporal resolution 7T fMRI. Neuroimage 2018;181:279-291. [PMID: 29935223 PMCID: PMC6245599 DOI: 10.1016/j.neuroimage.2018.06.056] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Revised: 05/25/2018] [Accepted: 06/19/2018] [Indexed: 12/29/2022]  Open
21
Liu TT. Reprint of 'Noise contributions to the fMRI signal: An Overview'. Neuroimage 2018. [PMID: 28647022 DOI: 10.1016/j.neuroimage.2017.05.031] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]  Open
22
Polimeni JR, Renvall V, Zaretskaya N, Fischl B. Analysis strategies for high-resolution UHF-fMRI data. Neuroimage 2018;168:296-320. [PMID: 28461062 PMCID: PMC5664177 DOI: 10.1016/j.neuroimage.2017.04.053] [Citation(s) in RCA: 64] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2016] [Revised: 04/21/2017] [Accepted: 04/22/2017] [Indexed: 12/22/2022]  Open
23
Using Functional Connectivity Magnetic Resonance Imaging to Measure Brain Connectivity in Preterm Infants. Nurs Res 2017;66:490-495. [PMID: 29095379 DOI: 10.1097/nnr.0000000000000241] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
24
van Bergen RS, Jehee JFM. Modeling correlated noise is necessary to decode uncertainty. Neuroimage 2017;180:78-87. [PMID: 28801251 DOI: 10.1016/j.neuroimage.2017.08.015] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2017] [Revised: 08/02/2017] [Accepted: 08/03/2017] [Indexed: 10/19/2022]  Open
25
Learning-based structurally-guided construction of resting-state functional correlation tensors. Magn Reson Imaging 2017;43:110-121. [PMID: 28729016 DOI: 10.1016/j.mri.2017.07.008] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 05/22/2017] [Accepted: 07/13/2017] [Indexed: 12/18/2022]
26
Reprint of: Minimizing noise in pediatric task-based functional MRI; Adolescents with developmental disabilities and typical development. Neuroimage 2017. [DOI: 10.1016/j.neuroimage.2017.05.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
27
Fassbender C, Mukherjee P, Schweitzer JB. Minimizing noise in pediatric task-based functional MRI; Adolescents with developmental disabilities and typical development. Neuroimage 2017;149:338-347. [PMID: 28130195 DOI: 10.1016/j.neuroimage.2017.01.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2016] [Revised: 01/09/2017] [Accepted: 01/10/2017] [Indexed: 12/21/2022]  Open
28
Liu TT. Noise contributions to the fMRI signal: An overview. Neuroimage 2016;143:141-151. [PMID: 27612646 DOI: 10.1016/j.neuroimage.2016.09.008] [Citation(s) in RCA: 148] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Revised: 09/01/2016] [Accepted: 09/03/2016] [Indexed: 01/21/2023]  Open
29
Gonzalez-Castillo J, Panwar P, Buchanan LC, Caballero-Gaudes C, Handwerker DA, Jangraw DC, Zachariou V, Inati S, Roopchansingh V, Derbyshire JA, Bandettini PA. Evaluation of multi-echo ICA denoising for task based fMRI studies: Block designs, rapid event-related designs, and cardiac-gated fMRI. Neuroimage 2016;141:452-468. [PMID: 27475290 DOI: 10.1016/j.neuroimage.2016.07.049] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2016] [Revised: 07/21/2016] [Accepted: 07/25/2016] [Indexed: 10/21/2022]  Open
30
Jung K, Takane Y, Hwang H, Woodward TS. Multilevel Dynamic Generalized Structured Component Analysis for Brain Connectivity Analysis in Functional Neuroimaging Data. PSYCHOMETRIKA 2016;81:565-581. [PMID: 25697370 DOI: 10.1007/s11336-015-9440-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Indexed: 06/04/2023]
31
Dubois J, Adolphs R. Building a Science of Individual Differences from fMRI. Trends Cogn Sci 2016;20:425-443. [PMID: 27138646 DOI: 10.1016/j.tics.2016.03.014] [Citation(s) in RCA: 389] [Impact Index Per Article: 48.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2016] [Revised: 03/28/2016] [Accepted: 03/31/2016] [Indexed: 11/19/2022]
32
Roels SP, Moerkerke B, Loeys T. Bootstrapping fMRI Data: Dealing with Misspecification. Neuroinformatics 2016;13:337-52. [PMID: 25672877 DOI: 10.1007/s12021-015-9261-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
33
Shakil S, Lee CH, Keilholz SD. Evaluation of sliding window correlation performance for characterizing dynamic functional connectivity and brain states. Neuroimage 2016;133:111-128. [PMID: 26952197 DOI: 10.1016/j.neuroimage.2016.02.074] [Citation(s) in RCA: 180] [Impact Index Per Article: 22.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2015] [Revised: 02/04/2016] [Accepted: 02/29/2016] [Indexed: 01/12/2023]  Open
34
Astrakas LG, Kallistis NS, Kalef-Ezra JA. Technical Note: Independent component analysis for quality assurance in functional MRI. Med Phys 2016;43:983-92. [PMID: 26843258 DOI: 10.1118/1.4940123] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]  Open
35
HIV infection is associated with attenuated frontostriatal intrinsic connectivity: a preliminary study. J Int Neuropsychol Soc 2015;21:203-13. [PMID: 25824201 PMCID: PMC4400233 DOI: 10.1017/s1355617715000156] [Citation(s) in RCA: 65] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
36
Welvaert M, Rosseel Y. A review of fMRI simulation studies. PLoS One 2014;9:e101953. [PMID: 25048024 PMCID: PMC4105464 DOI: 10.1371/journal.pone.0101953] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Accepted: 06/13/2014] [Indexed: 11/19/2022]  Open
37
Boubela RN, Kalcher K, Nasel C, Moser E. Scanning fast and slow: current limitations of 3 Tesla functional MRI and future potential. FRONTIERS IN PHYSICS 2014;2:00001. [PMID: 28164083 PMCID: PMC5291320 DOI: 10.3389/fphy.2014.00001] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
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