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Wang S, Jiang L, Li J, Cheng X, Luo C, Zhang G. The uptake and degradation of polychlorinated biphenyls in constructed wetlands planted with Myriophyllum aquaticum. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:17115-17123. [PMID: 38332419 DOI: 10.1007/s11356-024-32138-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 01/18/2024] [Indexed: 02/10/2024]
Abstract
The unregulated dismantling and improper disposal of electronic waste lead to severe soil contamination by polychlorinated biphenyls (PCBs). Constructed wetlands (CWs) play an important role in PCBs removal as a result of the co-existence of anaerobic and aerobic conditions. However, the effects and mechanisms of different PCBs concentrations in soils on plant uptake and PCBs degradation within CWs are unclear. We evaluated the uptake and degradation of PCBs at different concentrations by Myriophyllum aquaticum (Vell.) Verdc. Planting significantly increased PCBs removal by 8.70% (p < 0.05) in soils with 1500 and 2500 μg/kg PCBs, whereas no significant effect was observed at 500 and 1000 μg/kg. PCBs levels did not significantly affect plant growth and PCBs accumulation. The contribution of plant uptake to PCBs removal was only 0.10-0.12%, indicating that microbial degradation was the dominant pathway for PCBs removal after planting with M. aquaticum. In the treatments with PCBs ≥ 1500 μg/kg, M. aquaticum increased the microbial population, altered the microbial community structure and enriched PCB-degrading bacteria. Functional prediction revealed that microbes in M. aquaticum rhizosphere secreted more peroxidase and glycosyltransferase than non-plant control, which were likely involved in PCBs metabolism.
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Affiliation(s)
- Shuang Wang
- Joint Laboratory for Environmental Pollution and Control, State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- School of Materials and Environmental Engineering, Chengdu Technological University, Chengdu, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Longfei Jiang
- Joint Laboratory for Environmental Pollution and Control, State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
| | - Jibing Li
- Joint Laboratory for Environmental Pollution and Control, State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
| | - Xianghui Cheng
- Joint Laboratory for Environmental Pollution and Control, State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
- University of Chinese Academy of Sciences, Beijing, China
| | - Chunling Luo
- Joint Laboratory for Environmental Pollution and Control, State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China.
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China.
| | - Gan Zhang
- Joint Laboratory for Environmental Pollution and Control, State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou, China
- CAS Center for Excellence in Deep Earth Science, Guangzhou, China
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2
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Wang S, Zhao X, Li J, Dai Y, Cheng X, Jiang L, Luo C, Zhang G. A novel mechanism of enhanced PCBs degradation associated with nitrogen in the rhizosphere of the wetland plant Myriophyllum aquaticum. JOURNAL OF HAZARDOUS MATERIALS 2024; 461:132466. [PMID: 37716270 DOI: 10.1016/j.jhazmat.2023.132466] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Revised: 08/30/2023] [Accepted: 08/31/2023] [Indexed: 09/18/2023]
Abstract
Co-contamination of polychlorinated biphenyls (PCBs) and nitrogen (N) is widespread. Here, N removal and PCBs degradation were investigated in constructed wetlands populated with Myriophyllum aquaticum, and the role of N in PCBs degradation was explored as well. Nearly 97% of N was removed in the planted system, whereas less than 40% was removed in the plant-free system. Compared to the treatment with plants and no N amendment, N addition enhanced plant growth by 31.9% and PCBs removal by 9.90%. PCBs attenuation was mainly attributed to microbial degradation rather than plant uptake. Using DNA stable-isotope probing, 26 operational taxonomic units were identified across all treatments, of which 25 were linked to PCBs degradation for the first time. Some PCB-degraders were associated with nitrification/denitrification and were significantly enriched in the treatment that included both plants and N application, indicating that PCBs degradation was promoted by recruiting ammonia-oxidising and denitrifying microbes with PCBs metabolic ability. This was confirmed by the higher A13/A12 ratios for the bphC, amoA, and nirK genes and their significant positive correlations. Overall, the findings clarify the novel mechanism by which N promotes PCBs degradation in constructed wetlands and offers a theoretical basis for efficiently removing inorganic elements and persistent organic pollutants.
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Affiliation(s)
- Shuang Wang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China; School of Materials and Environmental Engineering, Chengdu Technology University, Chengdu 610000, China
| | - Xuan Zhao
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
| | - Jibing Li
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
| | - Yeliang Dai
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Xianghui Cheng
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Longfei Jiang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China.
| | - Chunling Luo
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China.
| | - Gan Zhang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
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3
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Maucourt F, Cébron A, Budzinski H, Le Menach K, Peluhet L, Czarnes S, Melayah D, Chapulliot D, Vallon L, Plassart G, Hugoni M, Fraissinet-Tachet L. Prokaryotic, Microeukaryotic, and Fungal Composition in a Long-Term Polychlorinated Biphenyl-Contaminated Brownfield. MICROBIAL ECOLOGY 2023; 86:1696-1708. [PMID: 36646913 DOI: 10.1007/s00248-022-02161-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 12/15/2022] [Indexed: 06/17/2023]
Abstract
Polychlorinated biphenyls (PCBs) are recognized as persistent organic pollutants and accumulate in organisms, soils, waters, and sediments, causing major health and ecological perturbations. Literature reported PCB bio-transformation by fungi and bacteria in vitro, but data about the in situ impact of those compounds on microbial communities remained scarce while being useful to guide biotransformation assays. The present work investigated for the first time microbial diversity from the three-domains-of-life in a long-term contaminated brownfield (a former factory land). Soil samples were ranked according to their PCB concentrations, and a significant increase in abundance was shown according to increased concentrations. Microbial communities structure showed a segregation from the least to the most PCB-polluted samples. Among the identified microorganisms, Bacteria belonging to Gammaproteobacteria class, as well as Fungi affiliated to Saccharomycetes class or Pleurotaceae family, including some species known to transform some PCBs were abundantly retrieved in the highly polluted soil samples.
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Affiliation(s)
- Flavien Maucourt
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France
- ENVISOL, 2-4 Rue Hector Berlioz, 38110, La Tour du Pin, France
| | - Aurélie Cébron
- Université de Lorraine, CNRS, LIEC, 54000, Nancy, France
| | | | | | | | - Sonia Czarnes
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France
| | - Delphine Melayah
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France
- Univ Lyon, INSA Lyon, CNRS, UMR 5240 Microbiologie Adaptation Et Pathogénie, 69621, Villeurbanne, France
| | - David Chapulliot
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France
| | - Laurent Vallon
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France
| | - Gaël Plassart
- ENVISOL, 2-4 Rue Hector Berlioz, 38110, La Tour du Pin, France
| | - Mylène Hugoni
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France
- Univ Lyon, INSA Lyon, CNRS, UMR 5240 Microbiologie Adaptation Et Pathogénie, 69621, Villeurbanne, France
- Institut Universitaire de France (IUF), Paris, France
| | - Laurence Fraissinet-Tachet
- Univ Lyon, Université Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, UMR Ecologie Microbienne, 69622, Villeurbanne, France.
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Wang S, Li J, Jiang L, Wang S, Zhao X, Dai Y, Luo C, Zhang G. The influence of anaerobic dechlorination on the aerobic degradation of PCBs in e-waste-contaminated soils in an anaerobic-aerobic two-stage treatment. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 844:157195. [PMID: 35810888 DOI: 10.1016/j.scitotenv.2022.157195] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 06/17/2022] [Accepted: 07/02/2022] [Indexed: 06/15/2023]
Abstract
The combination of microbial reductive dechlorination and aerobic oxidation (RD-AO) process was proposed to be a promising strategy for extensive bioremediation of highly chlorinated polychlorinated biphenyls (PCBs). Nonetheless, experimental evidence on the impact of the RD on subsequent AO in anaerobic-aerobic two-stage treatment remains scarce. The present study applied stable-isotope probing (SIP) to explore the RD-AO mediated degradation of PCBs in an e-waste-contaminated soil. The RD-AO treatment resulted in 37.1 % and 48.2 % degradation of PCB180 and PCB9, respectively, while the PCB9 degradation efficiency decreased compared to the sole AO (81.2 %). The inhibition of PCB aerobic degradation might be caused by the alteration of aerobic bacterial community, which was proved by a higher abundance of anaerobic bacteria and a lower abundance of aerobic bacteria being observed in the aerobic stage of RD-AO. Further evidence was obtained using DNA-SIP that the anaerobic stage altered the PCB degraders' community structures and changed three of the five degraders. There were four lineages (Arenimonas, Steroidobacter, Sulfurifustis, and Thermoanaerobacterales) identified as PCB degraders for the first time. Interestingly, three of them were found in RD-AO microcosm, suggesting that anaerobic-aerobic two-stage treatment can recruit novel bacteria involved in PCBs aerobic degradation. The present study provided novel insight into the synergistic integration of anaerobic and aerobic processes for extensive degradation of highly chlorinated PCBs.
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Affiliation(s)
- Shuang Wang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jibing Li
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
| | - Longfei Jiang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
| | - Shanquan Wang
- Environmental Microbiomics Research Center, School of Environmental Science and Engineering, Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Sun Yat-Sen University, Guangzhou 510275, China
| | - Xuan Zhao
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yeliang Dai
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Chunling Luo
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China.
| | - Gan Zhang
- State Key Laboratory of Organic Geochemistry and Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; CAS Center for Excellence in Deep Earth Science, Guangzhou 510640, China
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5
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Sun P, Zhao W. Strategies to Control Human Health Risks Arising from Antibiotics in the Environment: Molecular Modification of QNs for Enhanced Plant-Microbial Synergistic Degradation. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2021; 18:10610. [PMID: 34682354 PMCID: PMC8536065 DOI: 10.3390/ijerph182010610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Revised: 10/05/2021] [Accepted: 10/08/2021] [Indexed: 12/30/2022]
Abstract
In the present work, a comprehensive screening and evaluation system was established to improve the plant-microbial synergistic degradation effects of QNs. The study included the construction of a 3D-QSAR model, the molecular modification, environmental friendliness and functional evaluation of drugs, degradation pathway simulation, and human health risk assessment. Molecular dynamics was applied to quantify the binding capacity of QNs toward the plant degradation enzyme (peroxidase) and microbial degradation enzymes (manganese peroxidase, lignin peroxidase, and laccase). The fuzzy comprehensive evaluation method was used in combination with the weighted average method for normalization and assigning equal weights to the plant and microbial degradation effect values of the QNs. Considering the synergistic degradation effect value as the dependent variable and the molecular information of the QNs as the independent variable, a 3D-QSAR model was constructed for the plant-microbial synergistic degradation effect of QNs. The constructed model was then employed to conduct the molecular modification, environmental friendliness and functional evaluation, degradation pathway simulation, and human health risk assessment of transformation products using pharmacokinetics and toxicokinetics. The results revealed that the synergistic degradation effect 3D-QSAR (CoMSIA) model exhibited good internal and external prediction ability, fitting ability, stability, and no overfitting phenomenon. Norfloxacin (NOR) was used as the target molecule in the molecular modification. A total of 35 NOR derivatives with enhanced plant-microbial synergistic degradation effect (1.32-21.51%) were designed by introducing small-volume, strongly electronegative, and hydrophobic hydrogen bond receptor groups into the active group of the norfloxacin structure. The environment-friendliness and the functionality of NOR were evaluated prior to and after the modification, which revealed seven environment-friendly FQs derivatives exhibiting moderate improvement in stability and bactericidal efficacy. The simulation of the NOR plant and microbial degradation pathways prior to and after the modification and the calculation of the reaction energy barrier revealed Pathway A (D-17 to D-17-2) and Pathway B (D-17 to D-17-4) as the most prone degradation pathways in plants and Pathway A (D-17 to D-17-1) and Pathway B (D-17 to D-17-4) as the most prone degradation pathways in microorganisms. This demonstrated that the degradation of the modified NOR derivatives was significantly enhanced, with the hydroxylation and piperazine ring substitution reaction playing an important role in the degradation process. Finally, the parameters, including hepatotoxicity, mutagenicity, and rodent carcinogenicity, among others, predicted using the pharmacokinetics and toxicokinetics analyses revealed a significant reduction in the human health risk associated with the modified NOR, along with a considerable reduction in the toxicity of its transformation products, implying that the human health risk associated with the transformation products was reduced remarkably. The present study provides a theoretical basis for novel ideas and evaluation programs for improving the plant-microbial synergistic degradation of the QNs antibiotics for source control and drug design, thereby reducing the residues of these antibiotics and the associated hazard in the complex plant-soil environment, ultimately decreasing the potential risks to human health.
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Affiliation(s)
| | - Wenjin Zhao
- College of New Energy and Environment, Jilin University, Changchun 130012, China;
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Anyasi RO, Atagana HI. Understanding the effect of oil on phytoremediation of PCB co-contamination in transformer oil using Chromolaena odorata. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2021; 23:597-608. [PMID: 33556260 DOI: 10.1080/15226514.2020.1847031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Greenhouse assessment of the effect of oil on Chromolaena odorata ability to remove PCB from soil treated with transformer oil co-contaminated with Aroclor 1260 was done. Plants were transplanted into one kilogram of soil contained in 1 L pots differently containing 100, 200, and 500 ml of transformer oil (T/O), co-contaminated with 100 ppm of Aroclor. Treatments were done in two microcosms; direct contamination and soil cultured method. Measured plant growth parameters showed that C. odorata growth was affected by the different concentrations of oil. Inhibition of plant growth by oil increased with concentrations. At the end of six weeks, plant growth was affected in T/O amended soil. Plants size was increased by 1.4, 0.46 and -1.0% in direct treatment and 17.01, 6.09 and 1.08% in soil culture at the 100, 200 and 500 ppm respectively. Untreated control showed a 43.07% increase. Slight PCB recovery was observed in root tissues of C. odorata but soil PCB was reduced by 66.6, 53.2, 41.5% and 77.3, 74.7, 58.8% at both treatments in their respective concentrations of oil. However, unplanted control was reduced by 21.4 and 16.7% in the two treatments at 66,000 ppm of oil. This study has shown that with improved agronomic practices, there is a possibility of phytoremediation of soil PCB from PCB contained transformer oil contaminated soil using Chromolaena odorata, hence it should be optimized in the field.
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Affiliation(s)
- R O Anyasi
- Department of Environmental Sciences, Institute for Science and Technology Education, University of South Africa, Pretoria, South Africa
| | - H I Atagana
- Department of Environmental Sciences, Institute for Science and Technology Education, University of South Africa, Pretoria, South Africa
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Terzaghi E, Alberti E, Raspa G, Zanardini E, Morosini C, Anelli S, Armiraglio S, Di Guardo A. A new dataset of PCB half-lives in soil: Effect of plant species and organic carbon addition on biodegradation rates in a weathered contaminated soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 750:141411. [PMID: 32841806 DOI: 10.1016/j.scitotenv.2020.141411] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 07/28/2020] [Accepted: 07/30/2020] [Indexed: 06/11/2023]
Abstract
This paper presents a new dataset of Polychlorinated Biphenyls (PCBs) half-lives in soil. Data were obtained from a greenhouse experiment performed with an aged contaminated soil under semi-field conditions, collected from a National Relevance Site (SIN) located in Northern Italy (SIN Brescia-Caffaro). Ten different treatments (combination of seven plant species and different soil conditions) were considered together with the respective controls (soil without plants). PCB concentration reduction in soil was measured over a period of 18 months to evaluate the ability of plants to stimulate the biodegradation of these compounds. Tall fescue, tall fescue cultivated together with pumpkin and tall fescue amended with compost reduced more than the 50% of the 79 measured PCB congeners, including the most chlorinated ones (octa to deca-PCBs). However, the data obtained showed that no plant species was uniquely responsible for the effective degradation of all isomeric classes and congeners. The obtained half-lives ranged from 1.3 to 5.6 years and were up to a factor of 8 lower compared to generic HL values reported in literature. This highlighted the importance of cultivation and plant-microbe interactions in speeding up the PCB biodegradation. This new dataset could contribute to substantially improve the predictions of soil remediation time, multimedia fate and the long-range transport of PCBs. Additionally, the half-lives obtained here can also be used in the evaluation of the food chain transfer of these chemicals, and finally the exposure and potential for effects on ecosystems.
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Affiliation(s)
- Elisa Terzaghi
- DiSAT, University of Insubria, Via Valleggio 11, Como, Italy
| | - Elena Alberti
- DiSAT, University of Insubria, Via Valleggio 11, Como, Italy
| | - Giuseppe Raspa
- DICMA, Sapienza University of Rome, Via Eudossiana 18, Rome, Italy
| | | | | | | | - Stefano Armiraglio
- Municipality of Brescia - Museum of Natural Sciences, Via Ozanam 4, Brescia, Italy
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Malina N, Mazlova EA, Kulikova O. Markers of polychlorinated biphenyl (PCB) degradation in highly contaminated soil of Central Russia. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:36587-36595. [PMID: 32564313 DOI: 10.1007/s11356-020-09712-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Accepted: 06/11/2020] [Indexed: 06/11/2023]
Abstract
The highly polychlorinated biphenyl (PCB)-contaminated historical soil is located in the Serpukhov region (Central Russia). This study evaluates the processes of PCB degradation in the soil under natural conditions. Compositions of industrial mixtures (Sovol, Sovtol, and trichlorodiphenyl) were compared with PCB-contaminated soil from different depths. An increased number of dichlorobiphenyls (6 congeners) were determined in the deeper soil horizons (40-60 cm) in comparison with the surface layer (1 congener). Non-associated with industrial mixture congener, PCB 11 was determined in some soil layers with concentrations reaching 3.6 mg/kg. PCB 11 can be considered as a potential marker of activated degradation processes in highly contaminated soils with industrial mixtures. Aegopodium podagraria reduced total PCB concentrations in the contaminated soil to 25% during pot experiments. Prospective precursors of PCB 11 were significantly depleted (62-88%) after phytoremediation, but this did not increase PCB 11 concentration in the soil.
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Affiliation(s)
- Natalia Malina
- Department of Industrial Ecology, Gubkin Russian State University of Oil and Gas, Leninskiy pr-t 65k1, Moscow, Russian Federation, 119991.
| | - Elena A Mazlova
- Department of Industrial Ecology, Gubkin Russian State University of Oil and Gas, Leninskiy pr-t 65k1, Moscow, Russian Federation, 119991
| | - Olga Kulikova
- Department of Industrial Ecology, Gubkin Russian State University of Oil and Gas, Leninskiy pr-t 65k1, Moscow, Russian Federation, 119991
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9
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Terzaghi E, Vitale CM, Salina G, Di Guardo A. Plants radically change the mobility of PCBs in soil: Role of different species and soil conditions. JOURNAL OF HAZARDOUS MATERIALS 2020; 388:121786. [PMID: 31836368 DOI: 10.1016/j.jhazmat.2019.121786] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/28/2019] [Revised: 09/23/2019] [Accepted: 11/28/2019] [Indexed: 05/18/2023]
Abstract
The mobility of Polychlorinated Biphenyls (PCBs) in soil cultivated with different plant species was evaluated by means of a column experiment to investigate the specific plant influence on PCB environmental fate and the potential for leaching. The soil was collected at a National Relevance Site for remediation located in Northern Italy (SIN Brescia-Caffaro) and underwent a rhizoremediation treatment for 18 months with different plant species (Festuca arundinacea, Cucurbita pepo ssp pepo and Medicago sativa). The same but unplanted soil was also considered as control for comparison. The columns were leached with tap water and PCB concentrations were measured in the leachate after 7 days of soil/water contact. Soil previously cultivated with different plant species exhibited statistically different behavior in terms of chemical leaching among the different fractions. Total PCB bulk concentrations ranged from 24 to 219 ng/L. Leachate samples were enriched in tetra- to hepta-PCBs. While PCB concentrations in the dissolved phases varied within a factor of 2 between controls and treatments, PCB associated to particulate organic carbon (POC) differed by more than one order of magnitude. More specifically, Medicago sativa enriched the soil with POC doubling PCB leaching with respect to the other plant species and the unplanted controls.
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Affiliation(s)
- Elisa Terzaghi
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy
| | - Chiara Maria Vitale
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy
| | - Georgia Salina
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy
| | - Antonio Di Guardo
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
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Combined Effects of Compost and Medicago Sativa in Recovery a PCB Contaminated Soil. WATER 2020. [DOI: 10.3390/w12030860] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The effectiveness of adding compost and the plant Medicago sativa in improving the quality of a soil historically contaminated by polychlorinated biphenyls (PCBs) was tested in greenhouse microcosms. Plant pots, containing soil samples from an area contaminated by PCBs, were treated with the compost and the plant, separately or together. Moreover, un-treated and un-planted microcosms were used as controls. At fixed times (1, 133 and 224 days), PCBs were analysed and the structure (cell abundance, phylogenetic characterization) and functioning (cell viability, dehydrogenase activity) of the natural microbial community were also measured. The results showed the effectiveness of the compost and plant in increasing the microbial activity, cell viability, and bacteria/fungi ratio, and in decreasing the amount of higher-chlorinated PCBs. Moreover, a higher number of α-Proteobacteria, one of the main bacterial groups involved in the degradation of PCBs, was found in the compost and plant co-presence.
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11
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12
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Terzaghi E, Morselli M, Zanardini E, Morosini C, Raspa G, Di Guardo A. Improving the SoilPlusVeg model to evaluate rhizoremediation and PCB fate in contaminated soils. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2018; 241:1138-1145. [PMID: 30029323 DOI: 10.1016/j.envpol.2018.06.039] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2018] [Revised: 05/25/2018] [Accepted: 06/12/2018] [Indexed: 05/18/2023]
Abstract
Tools to predict environmental fate processes during remediation of persistent organic pollutants (POPs) in soil are desperately needed since they can elucidate the overall behavior of the chemical and help to improve the remediation process. A dynamic multimedia fate model (SoilPlusVeg) was further developed and improved to account for rhizoremediation processes. The resulting model was used to predict Polychlorinated Biphenyl (PCB) fate in a highly contaminated agricultural field (1089 ng/g d.w.) treated with tall fescue (Festuca arundinacea), a promising plant species for the remediation of contaminated soils. The model simulations allowed to calculate the rhizoremediation time (about 90 years), given the available rhizoremediation half-lives and the levels and fingerprints of the PCB congeners, to reach the legal threshold, to show the relevance of the loss processes from soil (in order of importance: degradation, infiltration, volatilization, etc.) and their dependence on meteorological and environmental dynamics (temperature, rainfall, DOC concentrations). The simulations showed that the effective persistence of PCBs in soil is deeply influenced by the seasonal variability. The model also allowed to evaluate the role of DOC as a possible enhancer of PCB degradation as a microorganism "spoon feeder" of PCBs in the soil solution. Additionally, we preliminary predicted how the contribution of PCB metabolites could modify the PCB fingerprint and their final total concentrations. This shows that the SoilPlusVeg model could be used in selecting the best choices for a sustainable rhizoremediation of a POP contaminated site.
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Affiliation(s)
- Elisa Terzaghi
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Melissa Morselli
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Elisabetta Zanardini
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Cristiana Morosini
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Giuseppe Raspa
- Department of Chemical Materials Environmental Engineering (DICMA), Sapienza University of Rome, Via Eudossiana 18, Rome, Italy.
| | - Antonio Di Guardo
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
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Thijs S, Sillen W, Truyens S, Beckers B, van Hamme J, van Dillewijn P, Samyn P, Carleer R, Weyens N, Vangronsveld J. The Sycamore Maple Bacterial Culture Collection From a TNT Polluted Site Shows Novel Plant-Growth Promoting and Explosives Degrading Bacteria. FRONTIERS IN PLANT SCIENCE 2018; 9:1134. [PMID: 30123233 PMCID: PMC6085565 DOI: 10.3389/fpls.2018.01134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Accepted: 07/13/2018] [Indexed: 05/23/2023]
Abstract
Military activities have worldwide introduced toxic explosives into the environment with considerable effects on soil and plant-associated microbiota. Fortunately, these microorganisms, and their collective metabolic activities, can be harnessed for site restoration via in situ phytoremediation. We characterized the bacterial communities inhabiting the bulk soil and rhizosphere of sycamore maple (Acer pseudoplatanus) in two chronically 2,4,6-trinitrotoluene (TNT) polluted soils. Three hundred strains were isolated, purified and characterized, a majority of which showed multiple plant growth promoting (PGP) traits. Several isolates showed high nitroreductase enzyme activity and concurrent TNT-transformation. A 12-member bacterial consortium, comprising selected TNT-detoxifying and rhizobacterial strains, significantly enhanced TNT removal from soil compared to non-inoculated plants, increased root and shoot weight, and the plants were less stressed than the un-inoculated plants as estimated by the responses of antioxidative enzymes. The sycamore maple tree (SYCAM) culture collection is a significant resource of plant-associated strains with multiple PGP and catalytic properties, available for further genetic and phenotypic discovery and use in field applications.
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Affiliation(s)
- Sofie Thijs
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Wouter Sillen
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Sascha Truyens
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Bram Beckers
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Jonathan van Hamme
- Department of Biological Sciences, Thompson Rivers University, Kamloops, BC, Canada
| | - Pieter van Dillewijn
- Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas, Granada, Spain
| | - Pieter Samyn
- Applied and Analytical Chemistry, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Robert Carleer
- Applied and Analytical Chemistry, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Nele Weyens
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
| | - Jaco Vangronsveld
- Environmental Biology, Centre for Environmental Sciences, Hasselt University, Diepenbeek, Belgium
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Sharma JK, Gautam RK, Nanekar SV, Weber R, Singh BK, Singh SK, Juwarkar AA. Advances and perspective in bioremediation of polychlorinated biphenyl-contaminated soils. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:16355-16375. [PMID: 28488147 PMCID: PMC6360087 DOI: 10.1007/s11356-017-8995-4] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/26/2016] [Accepted: 04/04/2017] [Indexed: 05/28/2023]
Abstract
In recent years, microbial degradation and bioremediation approaches of polychlorinated biphenyls (PCBs) have been studied extensively considering their toxicity, carcinogenicity and persistency potential in the environment. In this direction, different catabolic enzymes have been identified and reported for biodegradation of different PCB congeners along with optimization of biological processes. A genome analysis of PCB-degrading bacteria has led in an improved understanding of their metabolic potential and adaptation to stressful conditions. However, many stones in this area are left unturned. For example, the role and diversity of uncultivable microbes in PCB degradation are still not fully understood. Improved knowledge and understanding on this front will open up new avenues for improved bioremediation technologies which will bring economic, environmental and societal benefits. This article highlights on recent advances in bioremediation of PCBs in soil. It is demonstrated that bioremediation is the most effective and innovative technology which includes biostimulation, bioaugmentation, phytoremediation and rhizoremediation and acts as a model solution for pollution abatement. More recently, transgenic plants and genetically modified microorganisms have proved to be revolutionary in the bioremediation of PCBs. Additionally, other important aspects such as pretreatment using chemical/physical agents for enhanced biodegradation are also addressed. Efforts have been made to identify challenges, research gaps and necessary approaches which in future, can be harnessed for successful use of bioremediation under field conditions. Emphases have been given on the quality/efficiency of bioremediation technology and its related cost which determines its ultimate acceptability.
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Affiliation(s)
- Jitendra K Sharma
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Ravindra K Gautam
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
- Environmental Chemistry Research Laboratory, Department of Chemistry, University of Allahabad, Allahabad, 211002, India
| | - Sneha V Nanekar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Roland Weber
- POPs Environmental Consulting, Göppingen, Germany
| | - Brajesh K Singh
- Hawkesbury Institute for the Environment, University of Western Sidney, Sidney, Australia
| | - Sanjeev K Singh
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India
| | - Asha A Juwarkar
- CSIR-National Environmental Engineering Research Institute (CSIR-NEERI), Nehru Marg, Nagpur, 440020, India.
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Terzaghi E, Zanardini E, Morosini C, Raspa G, Borin S, Mapelli F, Vergani L, Di Guardo A. Rhizoremediation half-lives of PCBs: Role of congener composition, organic carbon forms, bioavailability, microbial activity, plant species and soil conditions, on the prediction of fate and persistence in soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 612:544-560. [PMID: 28865272 DOI: 10.1016/j.scitotenv.2017.08.189] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Revised: 08/17/2017] [Accepted: 08/17/2017] [Indexed: 05/18/2023]
Abstract
Polychlorinated biphenyls (PCBs) are persistent organic pollutants widely produced and used in many countries until the increasing concern about their environmental risk lead to their ban in the 1980s. Although their emissions decreased, PCBs are nowadays still present in the environment and can be reemitted from reservoir compartments such as contaminated soils. In the last two decades, there has been a growing interest in bioremediation technologies that use plants and microorganisms (i.e. rhizoremediation) to degrade organic chemicals in contaminated sites. Different studies have been conducted to investigate the potential of plant-microbe interactions in the remediation of organic chemical contaminated soils. They range from short-term and laboratory/greenhouse experiments to long-term and field trials and, when correctly set up, they could provide useful data such as PCB rhizoremediation half-lives in soil. Such type of data are important input parameters for multimedia fate models that aim to estimate the time requested to achieve regulatory thresholds in a PCB contaminated site, allowing to draw up its remediation plan. This review focuses on the main factors influencing PCB fate, persistence and bioavailability in soil including PCB mixture congener composition, soil organic carbon forms, microorganism activity, plant species and soil conditions. Furthermore, it provides an estimate of rhizoremediation half-lives of the ten PCB families starting from the results of literature rhizoremediation experiments. Finally, guidance to perform appropriate experiments to obtain comparable, accurate and useful data for fate estimation is proposed.
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Affiliation(s)
- Elisa Terzaghi
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Elisabetta Zanardini
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Cristiana Morosini
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
| | - Giuseppe Raspa
- Department of Chemical Materials Environmental Engineering (DICMA), Sapienza University of Rome, Via Eudossiana 18, Rome, Italy.
| | - Sara Borin
- Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, Milan, Italy.
| | - Francesca Mapelli
- Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, Milan, Italy.
| | - Lorenzo Vergani
- Department of Food, Environmental and Nutritional Sciences (DeFENS), University of Milan, Via Celoria 2, Milan, Italy.
| | - Antonio Di Guardo
- Department of Science and High Technology (DiSAT), University of Insubria, Via Valleggio 11, Como, Italy.
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Urbaniak M, Zieliński M, Wyrwicka A. The influence of the Cucurbitaceae on mitigating the phytotoxicity and PCDD/PCDF content of soil amended with sewage sludge. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2017; 19:207-213. [PMID: 27419261 DOI: 10.1080/15226514.2016.1207606] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The study evaluates the impact of sewage sludge on OECD - Organization for Economic Cooperation and Development and vegetable soil phytotoxicity, measured using three test species: Lepidium sativum, Sinapis alba and Sorghum saccharatum, and total and TEQ PCDD/PCDF (toxic equivalency polychlorinated dibenzo-p-dioxins/polychlorinated dibenzofurans) soil concentration, measured using HRGC/HRMS - High Resolution Gas Chromatography/High Resolution Mass Spectrometry. It also evaluates the effect of zucchini and cucumber cultivation during 5-weeks period on mitigating these parameters. The application of 3, 9 and 18 t/ha of sewage sludge gradually increases the phytotoxicity of both OECD and vegetable soil. In the case of OECD soil, the highest roots growth inhibitions were observed for S. alba (73%, 86% and 87%, respectively) and the lowest for S. saccharatum (7%, 59% and 70%), while in vegetable soil inhibitions were averagely 25% lower. Sludge application also led to a 38% (3 t/ha), 169% (9 t/ha) and 506% (18 t/ha) increase in PCDD/PCDF concentration, and the TEQs were augmented by 15%, 159% and 251%. Both soil phytotoxicity and total and TEQ PCDD/PCDF concentrations were diminished as a result of zucchini and cucumber cultivation. The maximum reduction of soil phytotoxicity (83%) was observed as an effect of cucumber cultivation, while zucchini was 11% less effective. Zucchini, in turn, was more efficient in PCDD/PCDF removal (37% reduction), followed by cucumber (24%). Such differences were not observed in the case of TEQ reductions (68% and 66% for zucchini and cucumber cultivation, respectively).
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Affiliation(s)
- Magdalena Urbaniak
- a European Regional Centre for Ecohydrology, Polish Academy of Sciences , Lodz , Poland
- b Faculty of Biology and Environmental Protection , Department of Applied Ecology , University of Lodz , Lodz , Poland
| | | | - Anna Wyrwicka
- d Faculty of Biology and Environmental Protection , Department of Plant Physiology and Biochemistry , University of Lodz , Lodz , Poland
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Tayabali AF, Coleman G, Crosthwait J, Nguyen KC, Zhang Y, Shwed P. Composition and pathogenic potential of a microbial bioremediation product used for crude oil degradation. PLoS One 2017; 12:e0171911. [PMID: 28178315 PMCID: PMC5298331 DOI: 10.1371/journal.pone.0171911] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Accepted: 01/27/2017] [Indexed: 02/01/2023] Open
Abstract
A microbial bioremediation product (MBP) used for large-scale oil degradation was investigated for microbial constituents and possible pathogenicity. Aerobic growth on various media yielded >108 colonies mL-1. Full-length 16S rDNA sequencing and fatty acid profiling from morphologically distinct colonies revealed ≥13 distinct genera. Full-length 16S rDNA library sequencing, by either Sanger or long-read PacBio technology, suggested that up to 21% of the MBP was composed of Arcobacter. Other high abundance microbial constituents (>6%) included the genera Proteus, Enterococcus, Dysgonomonas and several genera in the order Bacteroidales. The MBP was most susceptible to ciprofloxacin, doxycycline, gentamicin, and meropenam. MBP exposure of human HT29 and A549 cells caused significant cytotoxicity, and bacterial growth and adherence. An acellular MBP filtrate was also cytotoxic to HT29, but not A549. Both MBP and filtrate exposures elevated the neutrophil chemoattractant IL-8. In endotracheal murine exposures, bacterial pulmonary clearance was complete after one-week. Elevation of pro-inflammatory cytokines IL-1β, IL-6, and TNF-α, and chemokines KC and MCP-1 occurred between 2h and 48h post-exposure, followed by restoration to baseline levels at 96h. Cytokine/chemokine signalling was accompanied by elevated blood neutrophils and monocytes at 4h and 48h, respectively. Peripheral acute phase response markers were maximal at 24h. All indicators examined returned to baseline values by 168h. In contrast to HT29, but similar to A549 observations, MBP filtrate did not induce significant murine effects with the indicators examined. The results demonstrated the potentially complex nature of MBPs and transient immunological effects during exposure. Products containing microbes should be scrutinized for pathogenic components and subjected to characterisation and quality validation prior to commercial release.
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Affiliation(s)
- Azam F. Tayabali
- Biotechnology Laboratory, Environmental Health Science and Research Bureau, Healthy Environments and Consumer Safety Branch, Environmental Health Centre, Health Canada, Ottawa, Canada
- * E-mail:
| | - Gordon Coleman
- Biotechnology Laboratory, Environmental Health Science and Research Bureau, Healthy Environments and Consumer Safety Branch, Environmental Health Centre, Health Canada, Ottawa, Canada
| | - Jennifer Crosthwait
- Biotechnology Laboratory, Environmental Health Science and Research Bureau, Healthy Environments and Consumer Safety Branch, Environmental Health Centre, Health Canada, Ottawa, Canada
| | - Kathy C. Nguyen
- Biotechnology Laboratory, Environmental Health Science and Research Bureau, Healthy Environments and Consumer Safety Branch, Environmental Health Centre, Health Canada, Ottawa, Canada
| | - Yan Zhang
- Biotechnology Laboratory, Environmental Health Science and Research Bureau, Healthy Environments and Consumer Safety Branch, Environmental Health Centre, Health Canada, Ottawa, Canada
| | - Philip Shwed
- Biotechnology Laboratory, Environmental Health Science and Research Bureau, Healthy Environments and Consumer Safety Branch, Environmental Health Centre, Health Canada, Ottawa, Canada
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18
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Arslan M, Imran A, Khan QM, Afzal M. Plant-bacteria partnerships for the remediation of persistent organic pollutants. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017; 24:4322-4336. [PMID: 26139403 DOI: 10.1007/s11356-015-4935-3] [Citation(s) in RCA: 80] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2015] [Accepted: 06/22/2015] [Indexed: 05/22/2023]
Abstract
High toxicity, bioaccumulation factor and widespread dispersal of persistent organic pollutants (POPs) cause environmental and human health hazards. The combined use of plants and bacteria is a promising approach for the remediation of soil and water contaminated with POPs. Plants provide residency and nutrients to their associated rhizosphere and endophytic bacteria. In return, the bacteria support plant growth by the degradation and detoxification of POPs. Moreover, they improve plant growth and health due to their innate plant growth-promoting mechanisms. This review provides a critical view of factors that affect absorption and translocation of POPs in plants and the limitations that plant have to deal with during the remediation of POPs. Moreover, the synergistic effects of plant-bacteria interactions in the phytoremediation of organic pollutants with special reference to POPs are discussed.
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Affiliation(s)
- Muhammad Arslan
- Earth Sciences Department, King Fahd University of Petroleum and Minerals, Dhahran, 31261, Saudi Arabia
| | - Asma Imran
- Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Qaiser Mahmood Khan
- Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan
| | - Muhammad Afzal
- Environmental Biotechnology Division, National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan.
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Thijs S, Sillen W, Weyens N, Vangronsveld J. Phytoremediation: State-of-the-art and a key role for the plant microbiome in future trends and research prospects. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2017; 19:23-38. [PMID: 27484694 DOI: 10.1080/15226514.2016.1216076] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Phytoremediation is increasingly adopted as a more sustainable approach for soil remediation. However, significant advances in efficiency are still necessary to attain higher levels of environmental and economic sustainability. Current interventions do not always give the expected outcomes in field settings due to an incomplete understanding of the multicomponent biological interactions. New advances in -omics are gradually implemented for studying microbial communities of polluted land in situ. This opens new perspectives for the discovery of biodegradative strains and provides us new ways of interfering with microbial communities to enhance bioremediation rates. This review presents retrospectives and future perspectives for plant microbiome studies relevant to phytoremediation, as well as some knowledge gaps in this promising research field. The implementation of phytoremediation in soil clean-up management systems is discussed, and an overview of the promoting factors that determine the growth of the phytoremediation market is given. Continuous growth is expected since elimination of contaminants from the environment is demanded. The evolution of scientific thought from a reductionist view to a more holistic approach will boost phytoremediation as an efficient and reliable phytotechnology. It is anticipated that phytoremediation will prove the most promising for organic contaminant degradation and bioenergy crop production on marginal land.
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Affiliation(s)
- Sofie Thijs
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
| | - Wouter Sillen
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
| | - Nele Weyens
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
| | - Jaco Vangronsveld
- a Centre for Environmental Sciences, Hasselt University , Diepenbeek , Belgium
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20
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Plant-assisted bioremediation of a historically PCB and heavy metal-contaminated area in Southern Italy. N Biotechnol 2016; 38:65-73. [PMID: 27686395 DOI: 10.1016/j.nbt.2016.09.006] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2015] [Revised: 09/06/2016] [Accepted: 09/23/2016] [Indexed: 11/22/2022]
Abstract
A plant-assisted bioremediation strategy was applied in an area located in Southern Italy, close to the city of Taranto, historically contaminated by polychlorinated biphenyls (PCBs) and heavy metals. A specific poplar clone (Monviso) was selected for its ability to promote organic pollutant degradation in the rhizosphere, as demonstrated elsewhere. Chemical and microbiological analyses were performed at the time of poplar planting in selected plots at different distances from the trunk (0.25-1m) and at different soil depths (0-20 and 20-40cm), at day 420. A significant decrease in PCB congeners and a reduction in all heavy metals was observed where the poplar trees were present. No evidence of PCB and heavy metal reduction was observed in the non poplar-vegetated soil. Microbial analyses (dehydrogenase activity, cell viability, microbial abundance) of the autochthonous microbial community showed an improvement in soil quality. In particular, microbial activity generally increased in the poplar-rhizosphere and a positive effect was observed in some cases at up to 1m distance from the trunk and up to 40cm depth. The Monviso clone was effective in promoting both a general decrease in contaminant occurrence and an increase in microbial activity in the chronically polluted area a little more than one year after planting.
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Deng D, Liu J, Xu M, Zheng G, Guo J, Sun G. Uptake, translocation and metabolism of decabromodiphenyl ether (BDE-209) in seven aquatic plants. CHEMOSPHERE 2016; 152:360-8. [PMID: 26994429 DOI: 10.1016/j.chemosphere.2016.03.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2015] [Revised: 03/04/2016] [Accepted: 03/04/2016] [Indexed: 05/09/2023]
Abstract
Terrestrial plant uptake of PBDEs from contaminated soils has been widely reported recently. In this study the fate of deca-BDE within a plant/PBDEs/aquatic environment system was investigated through simulated pot experiments. Accumulations of the total PBDEs and deca-BDE were observed in tissues of seven test aquatic plant species, namely Phragmites australis, Cyperus papyrus, Alternanthera philoxeroides, Colocasia esculenta, Scirpus validus, Acorus calamus and Oryza sativa. In all seven plants, O. sativa leads the uptake and accumulation both in the total PBDEs (444.8 ng g(-1)) and deca-BDE (368.0 ng g(-1)) in roots. Among the six common phytoremediation aquatic plants, A. calamus leads the uptake (236.2 ng g(-1)), and P. australis leads the translocation (Cshoot/Croot = 0.35), while A. philoxeroides (43.4%) and P. australis (80.0%) lead in the metabolism efficiencies in the root and shoot, respectively. The detection of seventeen lesser brominated PBDE congeners provided the debromination evidence, and the specific PBDEs profiles in test plant species indicated there is no common metabolic pattern. Furthermore, a relative high proportion of lesser brominated PBDE congeners in shoots suggested the possible metabolic difference between roots and shoots. Finally, a noticeable percentage of penta- and octa-BDE derived from deca-BDE also hint the ecological risk in deca-BDE use. This comparative research on the aquatic plants provide a broad vision on the understanding of plant/PBDEs/aquatic environment interaction system, and may be applied to remediate PBDEs in contaminated waters and sediments.
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Affiliation(s)
- Daiyong Deng
- Guangdong Institute of Microbiology, Guangzhou 510070, China; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, China.
| | - Jin Liu
- Guangdong Institute of Microbiology, Guangzhou 510070, China; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, China; South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China; University of Chinese Academy of Sciences, Beijing 100039, China
| | - Meiying Xu
- Guangdong Institute of Microbiology, Guangzhou 510070, China; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, China
| | - Guolu Zheng
- Department of Agriculture and Environmental Sciences, Cooperative Research Programs, Lincoln University in Missouri, Jefferson City, MO 65101, USA
| | - Jun Guo
- Guangdong Institute of Microbiology, Guangzhou 510070, China; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, China
| | - Guoping Sun
- Guangdong Institute of Microbiology, Guangzhou 510070, China; State Key Laboratory of Applied Microbiology Southern China, Guangzhou 510070, China
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Evaluation of Ricinus communis L. for the Phytoremediation of Polluted Soil with Organochlorine Pesticides. BIOMED RESEARCH INTERNATIONAL 2015; 2015:549863. [PMID: 26301249 PMCID: PMC4537713 DOI: 10.1155/2015/549863] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Accepted: 05/27/2015] [Indexed: 11/29/2022]
Abstract
Phytoremediation is an attractive alternative to conventional treatments of soil due to advantages such as low cost, large application areas, and the possibility of in situ treatment. This study presents the assessment of phytoremediation processes conducted under controlled experimental conditions to evaluate the ability of Ricinus communis L., tropical plant species, to promote the degradation of 15 persistent organic pollutants (POPs), in a 66-day period. The contaminants tested were hexachlorocyclohexane (HCH), DDT, heptachlor, aldrin, and others. Measurements made in rhizosphere soil indicate that the roots of the studied species reduce the concentration of pesticides. Results obtained during this study indicated that the higher the hydrophobicity of the organic compound and its molecular interaction with soil or root matrix the greater its tendency to concentrate in root tissues and the research showed the following trend: HCHs < diclofop-methyl < chlorpyrifos < methoxychlor < heptachlor epoxide < endrin < o,p′-DDE < heptachlor < dieldrin < aldrin < o,p′-DDT < p,p′-DDT by increasing order of log Kow values. The experimental results confirm the importance of vegetation in removing pollutants, obtaining remediation from 25% to 70%, and demonstrated that Ricinus communis L. can be used for the phytoremediation of such compounds.
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Pagé AP, Yergeau É, Greer CW. Salix purpurea Stimulates the Expression of Specific Bacterial Xenobiotic Degradation Genes in a Soil Contaminated with Hydrocarbons. PLoS One 2015; 10:e0132062. [PMID: 26161539 PMCID: PMC4498887 DOI: 10.1371/journal.pone.0132062] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Accepted: 06/09/2015] [Indexed: 12/30/2022] Open
Abstract
The objectives of this study were to uncover Salix purpurea-microbe xenobiotic degradation systems that could be harnessed in rhizoremediation, and to identify microorganisms that are likely involved in these partnerships. To do so, we tested S. purpurea's ability to stimulate the expression of 10 marker microbial oxygenase genes in a soil contaminated with hydrocarbons. In what appeared to be a detoxification rhizosphere effect, transcripts encoding for alkane 1-monooxygenases, cytochrome P450 monooxygenases, laccase/polyphenol oxidases, and biphenyl 2,3-dioxygenase small subunits were significantly more abundant in the vicinity of the plant's roots than in bulk soil. This gene expression induction is consistent with willows' known rhizoremediation capabilities, and suggests the existence of S. purpurea-microbe systems that target many organic contaminants of interest (i.e. C4-C16 alkanes, fluoranthene, anthracene, benzo(a)pyrene, biphenyl, polychlorinated biphenyls). An enhanced expression of the 4 genes was also observed within the bacterial orders Actinomycetales, Rhodospirillales, Burkholderiales, Alteromonadales, Solirubrobacterales, Caulobacterales, and Rhizobiales, which suggest that members of these taxa are active participants in the exposed partnerships. Although the expression of the other 6 marker genes did not appear to be stimulated by the plant at the community level, signs of additional systems that rest on their expression by members of the orders Solirubrobacterales, Sphingomonadales, Actinomycetales, and Sphingobacteriales were observed. Our study presents the first transcriptomics-based identification of microbes whose xenobiotic degradation activity in soil appears stimulated by a plant. It paints a portrait that contrasts with the current views on these consortia's composition, and opens the door for the development of laboratory test models geared towards the identification of root exudate characteristics that limit the efficiency of current willow-based rhizoremediation applications.
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Affiliation(s)
- Antoine P. Pagé
- Department of Natural Resource Sciences, McGill University, Montréal, Québec, Canada
- * E-mail:
| | - Étienne Yergeau
- Energy, Mining and Environment, National Research Council Canada, Montréal, Québec, Canada
| | - Charles W. Greer
- Department of Natural Resource Sciences, McGill University, Montréal, Québec, Canada
- Energy, Mining and Environment, National Research Council Canada, Montréal, Québec, Canada
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Sura-de Jong M, Reynolds RJB, Richterova K, Musilova L, Staicu LC, Chocholata I, Cappa JJ, Taghavi S, van der Lelie D, Frantik T, Dolinova I, Strejcek M, Cochran AT, Lovecka P, Pilon-Smits EAH. Selenium hyperaccumulators harbor a diverse endophytic bacterial community characterized by high selenium resistance and plant growth promoting properties. FRONTIERS IN PLANT SCIENCE 2015; 6:113. [PMID: 25784919 PMCID: PMC4345804 DOI: 10.3389/fpls.2015.00113] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2014] [Accepted: 02/11/2015] [Indexed: 05/07/2023]
Abstract
Selenium (Se)-rich plants may be used to provide dietary Se to humans and livestock, and also to clean up Se-polluted soils or waters. This study focused on endophytic bacteria of plants that hyperaccumulate selenium (Se) to 0.5-1% of dry weight. Terminal restriction fragment length polymorphism (T-RFLP) analysis was used to compare the diversity of endophytic bacteria of hyperaccumulators Stanleya pinnata (Brassicaceae) and Astragalus bisulcatus (Fabaceae) with those from related non-accumulators Physaria bellii (Brassicaceae) and Medicago sativa (Fabaceae) collected on the same, seleniferous site. Hyperaccumulators and non-accumulators showed equal T-RF diversity. Parsimony analysis showed that T-RFs from individuals of the same species were more similar to each other than to those from other species, regardless of plant Se content or spatial proximity. Cultivable endophytes from hyperaccumulators S. pinnata and A. bisulcatus were further identified and characterized. The 66 bacterial morphotypes were shown by MS MALDI-TOF Biotyper analysis and 16S rRNA gene sequencing to include strains of Bacillus, Pseudomonas, Pantoea, Staphylococcus, Paenibacillus, Advenella, Arthrobacter, and Variovorax. Most isolates were highly resistant to selenate and selenite (up to 200 mM) and all could reduce selenite to red elemental Se, reduce nitrite and produce siderophores. Seven isolates were selected for plant inoculation and found to have plant growth promoting properties, both in pure culture and when co-cultivated with crop species Brassica juncea (Brassicaceae) or M. sativa. There were no effects on plant Se accumulation. We conclude that Se hyperaccumulators harbor an endophytic bacterial community in their natural seleniferous habitat that is equally diverse to that of comparable non-accumulators. The hyperaccumulator endophytes are characterized by high Se resistance, capacity to produce elemental Se and plant growth promoting properties.
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Affiliation(s)
- Martina Sura-de Jong
- Department of Biochemistry and Microbiology, University of Chemistry and Technology in PraguePrague, Czech Republic
- Life Sciences and Technology, Van Hall Larenstein University of Applied SciencesLeeuwarden, Netherlands
| | | | - Klara Richterova
- Department of Biochemistry and Microbiology, University of Chemistry and Technology in PraguePrague, Czech Republic
| | - Lucie Musilova
- Department of Biochemistry and Microbiology, University of Chemistry and Technology in PraguePrague, Czech Republic
| | - Lucian C. Staicu
- Biology Department, Colorado State UniversityFort Collins, CO, USA
| | - Iva Chocholata
- Department of Biochemistry and Microbiology, University of Chemistry and Technology in PraguePrague, Czech Republic
| | | | - Safiyh Taghavi
- FMC Corporation, Center of Excellence for Agricultural Biosolutions, Research Triangle ParkNC, USA
| | - Daniel van der Lelie
- FMC Corporation, Center of Excellence for Agricultural Biosolutions, Research Triangle ParkNC, USA
| | - Tomas Frantik
- Institute of Botany, Academy of Sciences of the Czech RepublicPruhonice, Czech Republic
| | - Iva Dolinova
- The Institute for Nanomaterials, Advanced Technology and Innovation, Technical University of LiberecLiberec, Czech Republic
| | - Michal Strejcek
- Department of Biochemistry and Microbiology, University of Chemistry and Technology in PraguePrague, Czech Republic
| | | | - Petra Lovecka
- Department of Biochemistry and Microbiology, University of Chemistry and Technology in PraguePrague, Czech Republic
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Classen N, Lin X, Schmidt B. Metabolism of (14)C-labeled polychlorinated biphenyl congeners by wheat cell suspension cultures. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART. B, PESTICIDES, FOOD CONTAMINANTS, AND AGRICULTURAL WASTES 2015; 50:69-80. [PMID: 25587776 DOI: 10.1080/03601234.2015.975579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The metabolism of [UL-(14)C]-2,2',5,5'-tetrachlorobiphenyl ((14)C-PCB-52), [UL-(14)C]-2,2',4,4',5,5'-hexachlorobiphenyl ((14)C-PCB-153, and a congeneric mixture of [UL-(14)C]-labeled polychlorinated biphenyls ((14)C-PCB-Mix) was studied in cell suspension cultures of wheat (Triticum aestivum L. cv. 'Heines Koga II'). About 50% of applied (14)C-PCB-52 (20 μg/assay) was transformed during 96 h of incubation. While 7.6% on non-extractable residues emerged, turnover of (14)C-PCB-52 was mainly due to soluble polar metabolites. These were subjected to chemical glycoside cleavage. In the resulting hydrolysate, four aglycons were identified by GC-EIMS, namely four tetrachloro-hydroxy-biphenyl isomers (C6H6Cl4O, M(+·) at m/z = 306, 308, 310 and 312), and one trichloro-hydroxy-biphenyl (C6H7Cl3O, M(+·) at m/z = 272, 274 and 276). Number and character of hydroxylated products pointed to cytochromes P450 as enzymatic catalysts of hydroxylation. (14)C-PCB-153 was metabolized by wheat to minor degree if at all. Due to GC-EIMS analysis, of (14)C-PCB-Mix consisted of biphenyl, one mono-, four di-, seven tri-, eleven tetra-, and four pentachlorobiphenyls besides traces of further mono- and hexachlorobiphenyls. Among these were PCB-28, PCB-52, PCB 101, and PCB-118 (identified by seven key congeners standard). The mixture resembled industrial products Clophen A30 or Aroclor 1016. Metabolic turnover of applied (14)C-PCB-Mix (15 μg/assay) was 30% after 96 h; 8.4% of non-extractable residues emerged. Using DDE (p,p'-dichlorodiphenyl-dichloroethylene) as internal standard it was demonstrated that biphenyl, one monochloro-, two dichloro-, and one trichlorobiphenyl were completely metabolized to polar products. Partial metabolization occurred with one di-, five tri-, and four tetrachlorobiphenyls. Two tri-, four tetra-, and all pentachlorbiphenyls proved to be stable. Due to strong interference by matrix, evaluation of three congeners was not possible. In addition to wheat, results of similar experiments with cell cultures of other species are briefly mentioned.
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Affiliation(s)
- Nicola Classen
- a Institute of Biology V , RWTH Aachen University , Aachen , Germany
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26
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Horwat M, Tice M, V. Kjellerup B. Biofilms at work: Bio-, phyto- and rhizoremediation approaches for soils contaminated with polychlorinated biphenyls. AIMS BIOENGINEERING 2015. [DOI: 10.3934/bioeng.2015.4.324] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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Passatore L, Rossetti S, Juwarkar AA, Massacci A. Phytoremediation and bioremediation of polychlorinated biphenyls (PCBs): state of knowledge and research perspectives. JOURNAL OF HAZARDOUS MATERIALS 2014; 278:189-202. [PMID: 24976127 DOI: 10.1016/j.jhazmat.2014.05.051] [Citation(s) in RCA: 150] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Revised: 05/15/2014] [Accepted: 05/16/2014] [Indexed: 05/20/2023]
Abstract
This review summarizes the bioremediation and phytoremediation technologies proposed so far to detoxify PCB-contaminated sites. A critical analysis about the potential and limits of the PCB pollution treatment strategies by means of plants, fungi and bacteria are elucidated, including the new insights emerged from recent studies on the rhizosphere potential and on the implementation of simultaneous aerobic and anaerobic biodegradation processes. The review describes the biodegradation and phytoremediation processes and elaborates on the environmental variables affecting contaminant degradation rates, summarizing the amendments recommended to enhance PCB degradation. Additionally, issues connected with PCB toxicology, actual field remediation strategies and economical evaluation are discussed.
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Affiliation(s)
- Laura Passatore
- Institute of Agro-environment and Forest Biology (IBAF), National Research Council (CNR), Via Salaria Km 29.300, 00015 Monterotondo (Rome), Italy; Department for Innovation in Biological, Agro-Food and Forest Systems (DIBAF), University of Tuscia, Via S. Camillo de Lellis snc, 01100 Viterbo, Italy
| | - Simona Rossetti
- Water Research Institute (IRSA), National Research Council (CNR), Via Salaria Km 29.300, 00015 Monterotondo (Rome), Italy
| | - Asha A Juwarkar
- Environmental Biotechnology Division, National Environmental Engineering Research Institute (NEERI), Nehru Marg, Nagpur 440 020, India
| | - Angelo Massacci
- Institute of Agro-environment and Forest Biology (IBAF), National Research Council (CNR), Via Salaria Km 29.300, 00015 Monterotondo (Rome), Italy.
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28
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Storey S, Ashaari M, McCabe G, Harty M, Dempsey R, Doyle O, Clipson N, Doyle E. Microbial community structure during fluoranthene degradation in the presence of plants. J Appl Microbiol 2014; 117:74-84. [DOI: 10.1111/jam.12518] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2014] [Revised: 03/25/2014] [Accepted: 04/03/2014] [Indexed: 11/29/2022]
Affiliation(s)
- S. Storey
- Environmental Microbiology Group; School of Biology and Environmental Science and Earth Institute; University College Dublin; Dublin 4 Ireland
| | - M.M. Ashaari
- Environmental Microbiology Group; School of Biology and Environmental Science and Earth Institute; University College Dublin; Dublin 4 Ireland
| | - G. McCabe
- School of Agriculture and Food Science; University College Dublin; Dublin 4 Ireland
| | - M. Harty
- School of Agriculture and Food Science; University College Dublin; Dublin 4 Ireland
| | - R. Dempsey
- Environmental Microbiology Group; School of Biology and Environmental Science and Earth Institute; University College Dublin; Dublin 4 Ireland
| | - O. Doyle
- School of Agriculture and Food Science; University College Dublin; Dublin 4 Ireland
| | - N. Clipson
- Environmental Microbiology Group; School of Biology and Environmental Science and Earth Institute; University College Dublin; Dublin 4 Ireland
| | - E.M. Doyle
- Environmental Microbiology Group; School of Biology and Environmental Science and Earth Institute; University College Dublin; Dublin 4 Ireland
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29
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Martin BC, George SJ, Price CA, Ryan MH, Tibbett M. The role of root exuded low molecular weight organic anions in facilitating petroleum hydrocarbon degradation: current knowledge and future directions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2014; 472:642-653. [PMID: 24317170 DOI: 10.1016/j.scitotenv.2013.11.050] [Citation(s) in RCA: 100] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2013] [Revised: 11/10/2013] [Accepted: 11/10/2013] [Indexed: 05/28/2023]
Abstract
Rhizoremediation is a bioremediation technique whereby enhanced microbial degradation of organic contaminants occurs within the plant root zone (rhizosphere). It is considered an effective and affordable 'green technology' for remediating soils contaminated with petroleum hydrocarbons (PHCs). This paper critically reviews the potential role of root exuded compounds in rhizoremediation, with emphasis on commonly exuded low molecular weight aliphatic organic acid anions (carboxylates). The extent to which remediation is achieved shows wide disparity among plant species. Therefore, plant selection is crucial for the advancement and widespread adoption of this technology. Root exudation is speculated to be one of the predominant factors leading to microbial changes in the rhizosphere and thus the potential driver behind enhanced petroleum biodegradation. Carboxylates can form a significant component of the root exudate mixture and are hypothesised to enhance petroleum biodegradation by: i) providing an easily degradable energy source; ii) increasing phosphorus supply; and/or iii) enhancing the contaminant bioavailability. These differing hypotheses, which are not mutually exclusive, require further investigation to progress our understanding of plant-microbe interactions with the aim to improve plant species selection and the efficacy of rhizoremediation.
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Affiliation(s)
- Belinda C Martin
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Suman J George
- School of Earth and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Charles A Price
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Megan H Ryan
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
| | - Mark Tibbett
- School of Earth and Environment, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; Department of Environmental Science and Technology, Cranfield University, College Road, Bedfordshire, MK43 0AL England, United Kingdom.
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30
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Abhilash PC, Dubey RK, Tripathi V, Srivastava P, Verma JP, Singh HB. Remediation and management of POPs-contaminated soils in a warming climate: challenges and perspectives. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2013; 20:5879-5885. [PMID: 23677754 DOI: 10.1007/s11356-013-1808-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2013] [Accepted: 05/06/2013] [Indexed: 06/02/2023]
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31
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Segura A, Ramos JL. Plant–bacteria interactions in the removal of pollutants. Curr Opin Biotechnol 2013; 24:467-73. [PMID: 23098915 DOI: 10.1016/j.copbio.2012.09.011] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Revised: 09/19/2012] [Accepted: 09/20/2012] [Indexed: 10/27/2022]
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32
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Gomes HI, Dias-Ferreira C, Ribeiro AB. Overview of in situ and ex situ remediation technologies for PCB-contaminated soils and sediments and obstacles for full-scale application. THE SCIENCE OF THE TOTAL ENVIRONMENT 2013; 445-446:237-60. [PMID: 23334318 DOI: 10.1016/j.scitotenv.2012.11.098] [Citation(s) in RCA: 70] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2012] [Revised: 11/28/2012] [Accepted: 11/28/2012] [Indexed: 05/21/2023]
Abstract
Polychlorinated biphenyls (PCB) are persistent organic pollutants used worldwide between the 1930s and 1980s. Although their use has been heavily restricted, PCB can be found in contaminated soils and sediments. The most frequent remediation solutions adopted are "dig and dump" and "dig and incinerate", but there are currently new methods that could be more sustainable alternatives. This paper takes a look into the remediation options available for PCB-contaminated soils and sediments, differentiating between biological, chemical, physical and thermal methods. The use of combined technologies was also reviewed. Most of them are still in an initial development stage and further research in different implementation issues is needed. There is no single technology that is the solution for PCB contamination problem. The successful remediation of a site will depend on proper selection, design and adjustment of the technology or combined technologies to the site characteristics.
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Affiliation(s)
- Helena I Gomes
- CENSE - Center for Environmental and Sustainability Research, Departamento de Ciências e Engenharia do Ambiente, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516 Caparica, Portugal.
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Uhlik O, Musilova L, Ridl J, Hroudova M, Vlcek C, Koubek J, Holeckova M, Mackova M, Macek T. Plant secondary metabolite-induced shifts in bacterial community structure and degradative ability in contaminated soil. Appl Microbiol Biotechnol 2012; 97:9245-56. [PMID: 23250224 DOI: 10.1007/s00253-012-4627-6] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2012] [Revised: 11/26/2012] [Accepted: 11/28/2012] [Indexed: 01/22/2023]
Abstract
The aim of the study was to investigate how selected natural compounds (naringin, caffeic acid, and limonene) induce shifts in both bacterial community structure and degradative activity in long-term polychlorinated biphenyl (PCB)-contaminated soil and how these changes correlate with changes in chlorobiphenyl degradation capacity. In order to address this issue, we have integrated analytical methods of determining PCB degradation with pyrosequencing of 16S rRNA gene tag-encoded amplicons and DNA-stable isotope probing (SIP). Our model system was set in laboratory microcosms with PCB-contaminated soil, which was enriched for 8 weeks with the suspensions of flavonoid naringin, terpene limonene, and phenolic caffeic acid. Our results show that application of selected plant secondary metabolites resulted in bacterial community structure far different from the control one (no natural compound amendment). The community in soil treated with caffeic acid is almost solely represented by Proteobacteria, Acidobacteria, and Verrucomicrobia (together over 99 %). Treatment with naringin resulted in an enrichment of Firmicutes to the exclusion of Acidobacteria and Verrucomicrobia. SIP was applied in order to identify populations actively participating in 4-chlorobiphenyl catabolism. We observed that naringin and limonene in soil foster mainly populations of Hydrogenophaga spp., caffeic acid Burkholderia spp. and Pseudoxanthomonas spp. None of these populations were detected among 4-chlorobiphenyl utilizers in non-amended soil. Similarly, the degradation of individual PCB congeners was influenced by the addition of different plant compounds. Residual content of PCBs was lowest after treating the soil with naringin. Addition of caffeic acid resulted in comparable decrease of total PCBs with non-amended soil; however, higher substituted congeners were more degraded after caffeic acid treatment compared to all other treatments. Finally, it appears that plant secondary metabolites have a strong effect on the bacterial community structure, activity, and associated degradative ability.
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Affiliation(s)
- Ondrej Uhlik
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Technicka 3, 166 28, Prague 6, Czech Republic,
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Kalinowski T, Halden RU. Can Stress Enhance Phytoremediation of Polychlorinated Biphenyls? ENVIRONMENTAL ENGINEERING SCIENCE 2012; 29:1047-1052. [PMID: 23236249 PMCID: PMC3516413 DOI: 10.1089/ees.2012.0089] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2012] [Accepted: 08/07/2012] [Indexed: 06/01/2023]
Abstract
Phytoremediation-plant-facilitated remediation of polluted soil and groundwater-is a potentially effective treatment technology for the remediation of heavy metals and certain organic compounds. However, contaminant attenuation rates are often not rapid enough to make phytoremediation a viable option when compared with alternative treatment approaches. Different strategies are being employed to enhance the efficacy of phytoremediation, including modification to the plant genome, inoculation of the rhizosphere with specialized and/or engineered bacteria, and treatment of the soil with supplementary chemicals, such as surfactants, chelators, or fertilizers. Despite these efforts, greater breakthroughs are necessary to make phytoremediation a viable technology. Here, we introduce and discuss the concept of integrating controlled environmental stresses as a strategy for enhancing phytoremediation. Plants have a diverse suite of defense mechanisms that are only induced in response to stress. Here, we examine some stress-response mechanisms in plants, focusing on defenses involving physiological changes that alter the soil microenvironment (rhizosphere), and outline how these defense mechanisms can be co-opted to enhance the effectiveness of phytoremediation of polychlorinated biphenyls and other contaminants.
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Affiliation(s)
- Tomasz Kalinowski
- Corresponding author: Swette Center for Environmental Biotechnology, The Biodesign Institute at Arizona State University, 1001 S. McAllister Avenue, Tempe, AZ 85287. Phone: 480-727-0698; Fax: 480-727-0889. E-mail:
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35
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Kurzawova V, Stursa P, Uhlik O, Norkova K, Strohalm M, Lipov J, Kochankova L, Mackova M. Plant-microorganism interactions in bioremediation of polychlorinated biphenyl-contaminated soil. N Biotechnol 2012; 30:15-22. [PMID: 22728721 DOI: 10.1016/j.nbt.2012.06.004] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2012] [Revised: 05/29/2012] [Accepted: 06/10/2012] [Indexed: 11/16/2022]
Abstract
During the second half of the last century a large amount of substances toxic for higher organisms was released to the environment. Physicochemical methods of pollutant removal are difficult and prohibitively expensive. Using biological systems such as microorganisms, plants, or consortia microorganisms-plants is easier, cheaper, and more environmentally friendly. The aim of this study was to isolate, characterize and identify microorganisms from contaminated soil and to find out the effect of plants on microbial diversity in the environment. Microorganisms were isolated by two approaches with the aim to find all cultivable species and those able to utilise biphenyl as a sole source of carbon and energy. The first approach was direct extraction and the second was isolation of bacteria after enrichment cultivation with biphenyl. Isolates were biochemically characterized by NEFERMtest 24 and then the composition of ribosomal proteins in bacterial cells was determined by MALDI-TOF mass spectrometry. Ribosomal proteins can be used as phylogenetic markers and thus MALDI-TOF MS can be exploited also for taxonomic identification because the constitution of ribosomal proteins in bacterial cells is specific for each bacterial species. Identification of microorganisms using this method is performed with the help of database Bruker Daltonics MALDI BioTyper. Isolated bacteria were analyzed from the point of the bphA gene presence. Bacteria with detected bphA gene were then taxonomically identified by 16S rRNA sequence. The ability of two different plant species, tobacco (Nicotiana tabacum) and nightshade (Solanum nigrum), to accumulate PCBs was studied as well. It was determined that various plant species differ in the PCBs accumulation from the contaminated soil. Also the content of PCBs in various plant tissues was compared. PCBs were detected in roots and aboveground biomass including leaves and berries.
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Affiliation(s)
- Veronika Kurzawova
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Technicka 3, 166 28 Prague 6, Czech Republic
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Sylvestre M. Prospects for using combined engineered bacterial enzymes and plant systems to rhizoremediate polychlorinated biphenyls. Environ Microbiol 2012; 15:907-15. [PMID: 23106850 DOI: 10.1111/1462-2920.12007] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2012] [Revised: 09/06/2012] [Accepted: 09/26/2012] [Indexed: 01/17/2023]
Abstract
The fate of polychlorinated biphenyls (PCBs) in soil is driven by a combination of interacting biological processes. Several investigations have brought evidence that the rhizosphere provides a remarkable ecological niche to enhance the PCB degradation process by rhizobacteria. The bacterial oxidative enzymes involved in PCB degradation have been investigated extensively and novel engineered enzymes exhibiting enhanced catalytic activities toward more persistent PCBs have been described. Furthermore, recent studies suggest that approaches involving processes based on plant-microbe associations are very promising to remediate PCB-contaminated sites. In this review emphasis will be placed on the current state of knowledge regarding the strategies that are proposed to engineer the enzymes of the PCB-degrading bacterial oxidative pathway and to design PCB-degrading plant-microbe systems to remediate PCB-contaminated soil.
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Affiliation(s)
- Michel Sylvestre
- Institut National de la Recherche Scientifique, INRS-Instittut Armand-Frappier, Laval, Quebec, Canada, H7V1B7.
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37
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Uhlik O, Wald J, Strejcek M, Musilova L, Ridl J, Hroudova M, Vlcek C, Cardenas E, Mackova M, Macek T. Identification of bacteria utilizing biphenyl, benzoate, and naphthalene in long-term contaminated soil. PLoS One 2012; 7:e40653. [PMID: 22808223 PMCID: PMC3396604 DOI: 10.1371/journal.pone.0040653] [Citation(s) in RCA: 80] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2012] [Accepted: 06/11/2012] [Indexed: 12/17/2022] Open
Abstract
Bacteria were identified associated with biodegradation of aromatic pollutants biphenyl, benzoate, and naphthalene in a long-term polychlorinated biphenyl- and polyaromatic hydrocarbon-contaminated soil. In order to avoid biases of culture-based approaches, stable isotope probing was applied in combination with sequence analysis of 16 S rRNA gene pyrotags amplified from (13)C-enriched DNA fractions. Special attention was paid to pyrosequencing data analysis in order to eliminate the errors caused by either generation of amplicons (random errors caused by DNA polymerase, formation of chimeric sequences) or sequencing itself. Therefore, sample DNA was amplified, sequenced, and analyzed along with the DNA of a mock community constructed out of 8 bacterial strains. This warranted that appropriate tools and parameters were chosen for sequence data processing. (13)C-labeled metagenomes isolated after the incubation of soil samples with all three studied aromatics were largely dominated by Proteobacteria, namely sequences clustering with the genera Rhodanobacter Burkholderia, Pandoraea, Dyella as well as some Rudaea- and Skermanella-related ones. Pseudomonads were mostly labeled by (13)C from naphthalene and benzoate. The results of this study show that many biphenyl/benzoate-assimilating bacteria derive carbon also from naphthalene, pointing out broader biodegradation abilities of some soil microbiota. The results also demonstrate that, in addition to traditionally isolated genera of degradative bacteria, yet-to-be cultured bacteria are important players in bioremediation. Overall, the study contributes to our understanding of biodegradation processes in contaminated soil. At the same time our results show the importance of sequencing and analyzing a mock community in order to more correctly process and analyze sequence data.
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Affiliation(s)
- Ondrej Uhlik
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic
| | - Jiri Wald
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic
| | - Michal Strejcek
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic
| | - Lucie Musilova
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic
| | - Jakub Ridl
- Department of Genomics and Bioinformatics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
| | - Miluse Hroudova
- Department of Genomics and Bioinformatics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
| | - Cestmir Vlcek
- Department of Genomics and Bioinformatics, Institute of Molecular Genetics, Czech Academy of Sciences, Prague, Czech Republic
| | - Erick Cardenas
- Center for Microbial Ecology, Michigan State University, East Lansing, Michigan, United States of America
| | - Martina Mackova
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic
| | - Tomas Macek
- Department of Biochemistry and Microbiology, Faculty of Food and Biochemical Technology, Institute of Chemical Technology Prague, Prague, Czech Republic
- * E-mail:
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Wu L, Li Z, Han C, Liu L, Teng Y, Sun X, Pan C, Huang Y, Luo Y, Christie P. Phytoremediation of soil contaminated with cadmium, copper and polychlorinated biphenyls. INTERNATIONAL JOURNAL OF PHYTOREMEDIATION 2012; 14:570-584. [PMID: 22908627 DOI: 10.1080/15226514.2011.619227] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
A pot experiment and afield trial were conducted to study the remediation of an aged field soil contaminated with cadmium, copper and polychlorinated biphenyls (PCBs) (7.67 +/- 0.51 mg kg(-1) Cd, 369 +/- 1 mg kg(-1) Cu in pot experiment; 8.46 +/- 0.31 mg kg(-1) Cd, 468 +/- 7 mg kg(-1) Cu, 323 +/- 12 microg kg(-1) PCBs for field experiment) under different cropping patterns. In the pot experiment Sedum plumbizincicola showed pronounced Cd phytoextraction. After two periods (14 months) of cropping the Cd removal rates in these two treatments were 52.2 +/- 12.0 and 56.1 +/- 9.1%, respectively. Total soil PCBs in unplanted control pots decreased from 323 +/- 11 to 49.3 +/- 6.6 microg kg(-1), but with no significant difference between treatments. The field microcosm experiment intercropping of three plant species reduced the yield of S. plumbizincicola, with a consequent decrease in soil Cd removal. S. plumbizincicola intercropped with E. splendens had the highest shoot Cd uptake (18.5 +/- 1.8 mg pot(-1)) after 6 months planting followed by intercropping with M. sativa (15.9 +/- 1.9 mg pot(-1)). Liming with S. plumbizincicola intercropped with M. sativa significantly promoted soil PCB degradation by 25.2%. Thus, adjustment of soil pH to 5.56 combined with intercropping with S. plumbizincicola and M. sativagave high removal rates of Cd, Cu, and PCBs.
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Affiliation(s)
- Longhua Wu
- Key Laboratory of Soil Environment and Pollution Remediation, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, PR China.
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Yu DN, Macawile MCA, Abella LC, Gallardo SM. Degradation of polychlorinated biphenyls in aqueous solutions after UV-peroxide treatment: focus on toxicity of effluent to primary producers. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2011; 74:1607-1614. [PMID: 21531462 DOI: 10.1016/j.ecoenv.2011.04.018] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/27/2011] [Revised: 04/05/2011] [Accepted: 04/15/2011] [Indexed: 05/30/2023]
Abstract
The combination of UV irradiation and hydrogen peroxide (UV-H(2)O(2)) was shown to be effective in treating water spiked with 2,2',4,4',5,5'-hexachlorobipheny (PCB 153), reducing its concentration by as much as 98%. To test the toxicity of the effluent, bioassays involving three species of primary producers were performed. Results showed the effluent exerting an adverse effect on the algae Scenedesmus bijugatus and the duckweed Lemna paucicostata. On the other hand, exposure of the mungbean Vigna radiata to the effluent revealed mostly no statistically significant adverse effect or growth stimulation. This suggested that on an exposure period of 96 h, higher forms of chlorophyll-bearing species such as plants are relatively unaffected by trace concentrations of PCBs and degradation products, while less differentiated species like algae and duckweeds are vulnerable.
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Affiliation(s)
- Dennis N Yu
- Chemical Engineering Department, De La Salle University - Manila, 2401 Taft Avenue, Malate, Manila 1004, Philippines.
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Matrix-assisted laser desorption ionization (MALDI)-time of flight mass spectrometry- and MALDI biotyper-based identification of cultured biphenyl-metabolizing bacteria from contaminated horseradish rhizosphere soil. Appl Environ Microbiol 2011; 77:6858-66. [PMID: 21821747 DOI: 10.1128/aem.05465-11] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Bacteria that are able to utilize biphenyl as a sole source of carbon were extracted and isolated from polychlorinated biphenyl (PCB)-contaminated soil vegetated by horseradish. Isolates were identified using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS). The usage of MALDI Biotyper for the classification of isolates was evaluated and compared to 16S rRNA gene sequence analysis. A wide spectrum of bacteria was isolated, with Arthrobacter, Serratia, Rhodococcus, and Rhizobium being predominant. Arthrobacter isolates also represented the most diverse group. The use of MALDI Biotyper in many cases permitted the identification at the level of species, which was not achieved by 16S rRNA gene sequence analyses. However, some isolates had to be identified by 16S rRNA gene analyses if MALDI Biotyper-based identification was at the level of probable or not reliable identification, usually due to a lack of reference spectra included in the database. Overall, this study shows the possibility of using MALDI-TOF MS and MALDI Biotyper for the fast and relatively nonlaborious identification/classification of soil isolates. At the same time, it demonstrates the dominant role of employing 16S rRNA gene analyses for the identification of recently isolated strains that can later fill the gaps in the protein-based identification databases.
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Using Plants to Remove Foreign Compounds from Contaminated Water and Soil. PLANT ECOPHYSIOLOGY 2011. [DOI: 10.1007/978-90-481-9852-8_8] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Novakova M, Mackova M, Antosova Z, Viktorova J, Szekeres M, Demnerova K, Macek T. Cloning the bacterial bphC gene into Nicotiana tabacum to improve the efficiency of phytoremediation of polychlorinated biphenyls. Bioeng Bugs 2010; 1:419-23. [PMID: 21468210 PMCID: PMC3056093 DOI: 10.4161/bbug.1.6.12723] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2010] [Revised: 06/04/2010] [Accepted: 06/21/2010] [Indexed: 11/19/2022] Open
Abstract
The aim of this work was to construct transgenic plants with increased capabilities to degrade organic pollutants, such as polychlorinated biphenyls. The environmentally important gene of bacterial dioxygenase, the bphC gene, was chosen to clone into a plant of Nicotiana tabacum. The chosen bphC gene encodes 2,3-dihydroxybiphenyl-1,2-dioxygenase, which cleaves the aromatic ring of dihydroxybiphenyl, and we cloned it in fusion with the gene for β-glucuronidase (GUS), luciferase (LUC) or with a histidine tail. Several genetic constructs were designed and prepared and the possible expression of desired proteins in tobacco plants was studied by transient expression. We used genetic constructs successfully expressing dioxygenase's genes we used for preparation of transgenic tobacco plants by agrobacterial infection. The presence of transgenic DNA , mRNA and protein was determined in parental and the first filial generation of transgenic plants with the bphC gene. Properties of prepared transgenic plants will be further studied.
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Affiliation(s)
- Martina Novakova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry; CAS; Joint Laboratory of IOCB and ICT Prague; Prague, Czech Republic
| | - Martina Mackova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry; CAS; Joint Laboratory of IOCB and ICT Prague; Prague, Czech Republic
| | - Zuzana Antosova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
| | - Jitka Viktorova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
| | - Miklos Szekeres
- Institute of Plant Biology; Biological Research Center of the Hungarian Academy of Sciences; Szeged, Hungary
| | - Katerina Demnerova
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
| | - Tomas Macek
- ICT Prague; Faculty of Food and Biochemical Technology; Department of Biochemistry and Microbiology; Prague, Czech Republic
- Institute of Organic Chemistry and Biochemistry; CAS; Joint Laboratory of IOCB and ICT Prague; Prague, Czech Republic
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Vrkoslavová J, Demnerová K, Macková M, Zemanová T, Macek T, Hajslová J, Pulkrabová J, Hrádková P, Stiborová H. Absorption and translocation of polybrominated diphenyl ethers (PBDEs) by plants from contaminated sewage sludge. CHEMOSPHERE 2010; 81:381-6. [PMID: 20684973 DOI: 10.1016/j.chemosphere.2010.07.010] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2010] [Revised: 07/02/2010] [Accepted: 07/09/2010] [Indexed: 05/22/2023]
Abstract
Polybrominated diphenyl ethers (PBDEs) are used as additive flame retardants. PBDEs are persistent, bioaccumulative and toxic compounds. They are often detected in sewage sludge which is applied on agricultural soils as fertilizer. The objective of this study was to find out whether plants are able to accumulate and translocate PBDEs. Tobacco (Nicotiana tabacum) and nightshade (Solanum nigrum) were planted in pots containing contaminated sewage sludge and uncontaminated substrate. After 6 months of plant cultivation in sewage sludge up to 15.4 ng g(-1) dw and 76.6 ng g(-1) dw of PBDE congeners--BDE 47, BDE 99 and BDE 100---were accumulated in the nightshade and tobacco tissue, respectively. Corresponding values in plants vegetated in the control garden substrate were 10 times lower. The bioconcentration factors (BCFs) of accumulated congeners were calculated. Tobacco exhibited higher BCFs values and for both plants BCFs values of BDE 47, BDE 99, BDE 100 and BDE 209 negatively correlated with their octanol-water partition coefficients (logK(ow)). The exception was decaBDE (BDE 209) which was accumulated only in tobacco tissue in the concentration of 116.8 ng g(-1) dw. The majority of PBDEs was detected in above-ground plant biomass indicating that both plants have the ability to translocate PBDEs. To our knowledge this is one of the first studies reporting the accumulation of both lower PBDEs and BDE 209 in plants. Our results suggest that absorption, accumulation and translocation of PBDEs by plants and their transfer to the food chain could represent another possible risk for human exposure.
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Affiliation(s)
- Jana Vrkoslavová
- Institute of Chemical Technology Prague, Department of Biochemistry and Microbiology, Technická 3, Prague, Czech Republic
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Schwitzguébel JP, Schröder P. Phytotechnologies to promote sustainable land use and improve food safety: outcomes and outlook from the European COST Action 859. Preface. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2009; 16:274-4. [PMID: 19760443 DOI: 10.1007/s11356-009-0242-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2009] [Accepted: 09/08/2009] [Indexed: 05/28/2023]
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