Revegetation of a barren rare earth mine using native plant species in reciprocal plantation: effect of phytoremediation on soil microbiological communities

Uptake and transport mechanisms of rare earth hyperaccumulators: A review

Due to their use in a number of advanced electronic technologies, Rare earth elements (REEs) have recently emerged as a key strategic resource for many nations worldwide. The significant increase in demand for REEs has thus greatly increased the mining of these substances, but this industrial-scale expansion of mining activities also poses potential risks to the surrounding environment, flora, fauna, and humans. Hence efficient REE remediation is one potential remediation process involving in situ clean-up of contaminated soil which has gained much attention in recent years, due to its low cost and lack of secondary pollution. However, some crucial aspects of phytoremediation, such as the precise-mechanisms of absorption, transport, and tolerance of REEs by hyperaccumulators -are poorly understood. This review briefly discusses the environmental risks associated with excess REEs, the efficacy of phytoremediation technologies coupled with, appropriate hyperaccumulator species to migrate REEs exposure. While REEs hyperaccumulator species should ideally be large-biomass trees and shrubs suitable for cropping in subtropical regions areas, such species have not yet been found. Specifically, this review focuses on the factors affecting the bioavailability of REEs in plants, where organic acids are critical ligands promoting efficient transport and uptake. Thus the uptake, transport, and binding forms of REEs in the above-ground parts of hyperaccumulators, especially the transporters isolated from the heavy metal transporter families, are discussed in detail. Finally, having summarized the current state of research in this area, this review proceeds to discuss current knowledge gaps and research directions. With a focus on hyperaccumulators, this review serves as a basis for future phytoremediation strategies of rare earth mining-impacted environments and addresses ecosystem/environmental degradation issues resulting from such mining activity.

Phytoremediation with application of anaerobic fermentation residues regulate the assembly of ecological clusters within co-occurrence network in ionic rare earth tailings soil: A pot experiment

The cultivation of energy plants (Pennisetum hybrid) with anaerobic fermentation residues has become an important phytoremediation approach in ionic rare earth elements (REEs) tailings because of its advantages in low cost and sustainability recently. In this study, a comparative pot experiment was carried out to determine the interaction pattern and key ecological clusters in microbial community respond to phytoremediation. Results showed that the application of biogas residues or slurry could effectively mitigate soil acidification, increase soil nutrients, alter REEs bioavailability and promote plant growth. Without fertilization, plant growth was restricted and soil acidification and nutrient-deficiency would be further aggravated. This difference in phytoremediation effect was associated with the assembly of seven key ecological clusters in co-occurrence network of rhizosphere soil. And such assembly pattern of cluster, determined by the environmental preference (e.g. pH, REEs), nutrient demand and interaction among clusters, could alter the microbial communities in response to the changes in soil context rapidly and exert corresponding ecological function during phytoremediation, such as participating in soil nutrient cycling, affecting plant biomass and altering REEs bioavailability. These findings provided new insights for anaerobic fermentation residues application, and can be beneficial to support for studying microbe-plant combined remediation in the future.

Composition and Distribution Characteristics of Rhizosphere Bacterial Community of Ammodendron bifolium Growing in Takeermohuer Desert Are Different from Those in Non-rhizosphere

Soil microorganisms play important roles in vegetation establishment and soil biogeochemical cycling. Ammodendron bifolium is a dominant sand-fixing and endangered plant in Takeermohuer Desert, and bacterial community associated with this plant rhizosphere is still unclear. In this study, we studied the composition and diversity of bacterial community from A. bifolium rhizosphere and bulk soil at different soil depths (i.e., 0-40 cm, 40-80 cm, 80-120 cm) using traditional bacterial isolation and high-throughput sequencing approaches, and preliminarily analyzed the edaphic factors influencing the structure of bacterial communities. Results showed that Takeermohuer Desert with high salinity has been an oligotrophic environment, while the rhizosphere exhibited eutrophication resulting from high content SOM (soil organic matter) and SAN (soil alkaline nitrogen) compared with bulk soil. The dominant bacterial groups in the desert were Actinobacteria (39.8%), Proteobacteria (17.4%), Acidobacteria (10.2%), Bacteroidetes (6.3%), Firmicutes (6.3%), Chloroflexi (5.6%), and Planctomycetes (5.0%) at the phyla level. However, the relative abundances of Proteobacteria (20.2%) and Planctomycetes (6.1%) were higher in eutrophic rhizosphere, and Firmicutes (9.8%) and Chloroflexi (6.9%) relatively higher in barren bulk soil. A large number of Actinobacteria were detected in all soil samples, of which the most abundant genus was Streptomyces (5.4%) and Actinomadura (8.2%) in the bulk soil and rhizosphere, respectively. The Chao1 and PD indexes in rhizosphere were significantly higher than those in bulk soil at the same soil depth, and tended to decrease with increasing soil depth. Co-occurrence network analyses showed that the keystone species in Takeermohuer Desert were Actinobacteria, Acidobacteria, Proteobacteria, and Chlorofexi. Furthermore, the major environmental factors affecting rhizosphere bacterial community were EC (electrical conductivity), SOM, STN (soil total nitrogen), SAN, and SAK (soil available potassium), while bulk soil were distance and C/N (STC/STN). We concluded that A. bifolium rhizosphere bacterial community is different from non-rhizosphere in composition, distribution, and environmental influencing factors, which will have important significances for understanding their ecological functions and maintaining biodiversity.

Native plant diversity for ecological reclamation in Moroccan open-pit phosphate mines

Mining activities have significant impacts on the environment, particularly in terms of the destruction of natural habitats andbiodiversity loss. With the increasing awareness of the importance of ecological restoration and conservation, there is a growing need to study and understand the flora that thrives in mining sites in order to facilitate successful reclamation efforts. This study aimed to investigate the floristic composition and plant diversity of four phosphate mine sites (PMSs) in Morocco, namely Bou Craa mine (BCM), Ben Guerir mine (BGM), Youssoufia mine (YSM), and Khouribga mine (KHM). The study found a total of 215 vascular plant species from 166 genera and 49 taxonomic families across the four sites. BGM was the most diverse site with 120 plant species, followed by KHM with 75, YSM with 57, and BCM with 54. Compositae family species were the most common at BGM and KHM, while Amaranthaceae species were dominant at BCM, and Poaceae and Compositae at YSM. Therophytes (annual species) were the most common functional group (45.0%), followed by chamaephytes (19.6%) and hemicryptophytes (15.9%). Atriplexnummularia and Chenopodiumalbum were the most common species found at all four sites, while Atriplexsemibaccata, Bassiamuricata, Haloxylonscoparium, and 12 other species were common at three sites. However, 156 plant species were found at only one site. The findings of this study highlight the significant abundance of plant species in Moroccan PMSs and provide a basis for successful ecological engineering rehabilitation plans. The study emphasizes the importance of studying the indigenous plant species that naturally populate these marginal lands to ensure successful reclamation efforts.

Trajectories of soil microbial recovery in response to restoration strategies in one of the largest and oldest open-pit phosphate mine in Asia

Southwestern China has the largest geological phosphorus-rich mountain in the world, which is seriously degraded by mining activities. Understanding the trajectory of soil microbial recovery and identifying the driving factors behind such restoration, as well as conducting corresponding predictive simulations, can be instrumental in facilitating ecological rehabilitation. Here, high-throughput sequencing and machine learning-based approaches were employed to investigate restoration chronosequences under four restoration strategies (spontaneous re-vegetation with or without topsoil; artificial re-vegetation with or without the addition of topsoil) in one of the largest and oldest open-pit phosphate mines worldwide. Although soil phosphorus (P) is extremely high here (max = 68.3 mg/g), some phosphate solubilizing bacteria and mycorrhiza fungi remain as the predominant functional types. Soil stoichiometry ratios (C:P and N:P) closely relate to the bacterial variation, but soil P content contributes less to microbial dynamics. Meanwhile, as restoration age increases, denitrifying bacteria and mycorrhizal fungi significantly increased. Significantly, based on partial least squares path analysis, it was found that the restoration strategy is the primary factor that drives soil bacterial and fungal composition as well as functional types through both direct and indirect effects. These indirect effects arise from factors such as soil thickness, moisture, nutrient stoichiometry, pH, and plant composition. Moreover, its indirect effects constitute the main driving force towards microbial diversity and functional variation. Using a hierarchical Bayesian model, scenario analysis reveals that the recovery trajectories of soil microbes are contingent upon changes in restoration stage and treatment strategy; inappropriate plant allocation may impede the recovery of the soil microbial community. This study is helpful for understanding the dynamics of the restoration process in degraded phosphorus-rich ecosystems, and subsequently selecting more reasonable recovery strategies.

Co-occurrence network of microbial communities affected by application of anaerobic fermentation residues during phytoremediation of ionic rare earth tailings area

The long-term exploitation of ionic rare earth elements (REEs) in southern China has produced a large-scale of abandoned tailings area. While the application of anaerobic fermentation residues to cultivate economically valuable remediation plants (e.g. energy plant) has become a hotspot due to their merits in low-cost and sustainability in recent years, the succession and co-occurrence patterns of these microbial communities remain unclear. In this study, soil samples were collected from the sustainable restoration area, natural restoration area and tailings area. The composition and diversity of bacterial and fungal communities on five soil samples were evaluated using high-throughput sequencing technology. The results shown that the phytoremediation with anaerobic fermentation residues could significantly improve the physicochemical properties (especially for soil nutrients) and microbial diversity of soil within 3 years, while these parameters in natural restoration area were lower. The nonmetric multidimensional scaling (NMDS) ordinations revealed the shifts of microbial communities depending on soil physicochemical properties and plant species, and soil nutrients were the main factors affecting the microbial variation explained by the variation partition analysis (VPA). The soil nutrient accumulation obviously changed the proportion of oligotrophic and copiotrophic groups, among which the copiotrophic groups were significantly increased, such as Proteobacteria, Bacteroidetes, Gemmatimonadetes and Glomeromycota. The microbial co-occurrence network analysis indicated that application of anaerobic fermentation residues could significantly improve the topological properties and the stability of microbial network. The copiotrophic groups (e.g. Proteobacteria, Ascomycota) became the key to assemble stable network structure. Moreover, herbaceous plants could increase the proportion of fungi (e.g. Ascomycota) in microbial network, which improved the topological properties with bacteria synergistically. Therefore, the soil environment of REEs tailings area was effectively optimized by anaerobic fermentation residues and herbaceous plants, which furthered understanding of co-occurrence pattern and mutualistic relationships of microbial communities during sustainable restoration.

Ecological evolution during the three-year restoration using rhizosphere soil cover method at a Lead-Zinc tailing pond in Karst areas

A major challenge for the restoration of the Lead-Zinc tailing pond in Karst areas lies in how to establish vegetation with less soil and restore the ecological functions of the substrate. In this study, a novel method, rhizosphere soil cover method (RSC), was applied to recover the vegetation at a Pb-Zn tailing pond in Karst areas. Two local tolerate plants, Miscanthus sinensis and Pueraria phaseoloides, were planted as pioneer species. Although 68 % of the tailing pond was not covered with soil, the vegetation coverage has reached over 90 % after restoration for three years. Compared with the natural revegetation process (vegetation coverage was <5 % after 20 years of natural succession), the revegetation in the tailing pond was accelerated by RSC and planting pioneer species. Both the plant's diversity and richness have significantly increased in the tailings pond during the restoration (p < 0.05). The important value indicators of M. sinensis and P. phaseoloides were the highest in the plant community, indicating the dominant role of these two plants in revegetation. Moreover, the total organic carbon, total nitrogen, total phosphorus, and total potassium in the tailings increased annually (p < 0.05), which demonstrated that the revegetation has improved the chemical properties in the substrate. In addition, the Shannon diversity index of bacteria in the tailings increased significantly from 4.11 to 5.51. The relative abundance of microbial genes related to carbon fixation and nitrogen fixation in the tailings increased by 17 % and 43 %, respectively. Meanwhile, the physicochemical properties, microbial community structure, and nutrient cycling function in the tailings without topsoil were improved more obviously than those in soils. It is thereby concluded that RSC is an efficient means for ecological restoration of the tailing ponds in Karst areas to improve the ecosystem structure and function of Pb-Zn tailings.

Soil salinity and its associated effects on soil microorganisms, greenhouse gas emissions, crop yield, biodiversity and desertification: A review

Significant research has been conducted on the effects of soil salinity issue on agricultural productivity. However, limited consideration has been given to its critical effects on soil biogeochemistry (e.g., soil microorganisms, soil organic carbon and greenhouse gas (GHG) emissions), land desertification, and biodiversity loss. This article is based on synthesis of information in 238 articles published between 1989 and 2022 on these effects of soil salinity. Principal findings are as follows: (1) salinity affects microbial community composition and soil enzyme activities due to changes in osmotic pressure and ion effects; (2) soil salinity reduces soil organic carbon (SOC) content and alters GHG emissions, which is a serious issue under intensifying agriculture and global warming scenarios; (3) soil salinity can reduce crop yield up to 58 %; (4) soil salinity, even at low levels, can cause profound alteration in soil biodiversity; (5) due to severe soil salinity, some soils are reaching critical desertification status; (6) innovate mitigation strategies of soil salinity need to be approached in a way that should support the United Nations Sustainable Development Goals (UN-SDGs). Knowledge gaps still exist mainly in the effects of salinity especially, responses of GHG emissions and biodiversity. Previous experiences quantifying soil salinity effects remained small-scale, and inappropriate research methods were sometimes applied for investigating soil salinity effects. Therefore, further studies are urgently required to improve our understanding on the effects of salinity, address salinity effects in larger-scale, and develop innovative research methods.

Plants-Microorganisms-Based Bioremediation for Heavy Metal Cleanup: Recent Developments, Phytoremediation Techniques, Regulation Mechanisms, and Molecular Responses

Rapid industrialization, mine tailings runoff, and agricultural activities are often detrimental to soil health and can distribute hazardous metal(loid)s into the soil environment, with harmful effects on human and ecosystem health. Plants and their associated microbes can be deployed to clean up and prevent environmental pollution. This green technology has emerged as one of the most attractive and acceptable practices for using natural processes to break down organic contaminants or accumulate and stabilize metal pollutants by acting as filters or traps. This review explores the interactions between plants, their associated microbiomes, and the environment, and discusses how they shape the assembly of plant-associated microbial communities and modulate metal(loid)s remediation. Here, we also overview microbe-heavy-metal(loid)s interactions and discuss microbial bioremediation and plants with advanced phytoremediation properties approaches that have been successfully used, as well as their associated biological processes. We conclude by providing insights into the underlying remediation strategies' mechanisms, key challenges, and future directions for the remediation of metal(loid)s-polluted agricultural soils with environmentally friendly techniques.

Insights into the nurse effect of a native plant Ficus tikoua on Pb‒Zn tailing wastelands in western Hunan, China

Lead‒zinc (Pb‒Zn) processing and extraction activity generates large volumes of highly toxic and bare tailing (BT) wastelands which poses a potentially extreme risk to the surrounding environment. Revegetation in the Pb‒Zn tailing wastelands is usually considered a beneficial approach. Ficus tikoua is a native vine which can successfully colonize on Maoping Pb‒Zn mine tailing wastelands in western Hunan, China. This study involved examination of the nurse effect of F. tikoua on Pb‒Zn tailing wastelands, to provide insights into the potential mechanism of F. tikoua influencing soil quality and vegetation succession. The vegetation characteristics, nutrient properties, and heavy metal contents of three different types of vegetation patches associated with F. tikoua in Pb‒Zn tailing wastelands, representing different stage of succession, were investigated. The height, coverage, and aboveground and underground biomass of these vegetation patches showed an increasing trend from vegetation patch I (VP-I) to patch III (VP-III). The nutrient pool and chemical properties of these tailing wastelands gradually re-established from BT wasteland to VP-III. From VP-I to VP-III, the total heavy metal contents (i.e., Pb, Zn, Cu, and Cd) and DTPA-extractable Pb, Cu, and Cd contents significantly decreased, while the DTPA-extractable Zn content remained unchanged. Our findings suggested that F. tikoua exerts a distinct nurse plant effect by increasing the essential nutrient content of soil, reducing the available heavy metal content, and subsequently increasing the number of plant species and the biomass. Therefore, F. tikoua may be used as a promising nurse plant for triggering revegetation and phytostabilization of Pb‒Zn tailing wastelands at the initial stage of remediation.

A review of in situ phytoextraction of rare earth elements from contaminated soils

Rare earth elements (REE), with their distinct physical and chemical properties, are critical components of green economic development. Intensive exploitation and application of REE are wreaking havoc on the environment. But research on REE is still limited to a small number and in a few countries. With the growing interest of REE in modern technologies and their potential ecological risks, phytoextraction seems promising for both REE pollution reduction and resource circulation. This paper summarizes the recent findings in the literature concerning REE hyperaccumulating plants and relevant accumulation mechanisms. Additional interests should be focused on a broader range of plant species and a global scale to achieve a sustainable REE supply.Novelty statementThis paper summarized the referenced potential rare earth elements (REE) hyperaccumulator plants that accumulated higher than REE 100 µg/g and discussed their accumulation and translocation mechanisms.We addressed the synonyms of Dicranopteris pedata, Dicranopteris dichotoma Bernh., and Dicranopteris linearis.Although Dicranopteris pedata has been extensively studied in the sense of REE hyperaccumulation, active phytoextraction outside of its native range, as well as in accumulation of the precious heavy rare earth elements, may be difficult. Thus, further interests should take these disadvantages into account.

High throughput screening of native species for tailings eco-restoration using novel computer visualization for plant phenotyping

Historical hard-rock mine activities have resulted in nearly half a million mining-impacted sites scattered around the US. Compared to conventional remediation, (aided) phytostabilization is generally cost-effective and ecologically productive approach, particularly for large-scale sites. Native species act to maintain higher local biodiversity, providing a foundation for natural ecological succession. Due to heterogeneity of mine waste, revegetation strategies are inconsistent in approach, and to avoid failure scenarios, greenhouse screening studies can identify candidate plants and amendment strategies before scaling up. This greenhouse study aimed to concurrently screen a variety of native species for their potential to revegetate Cu/Pb/Zn mine tailings and develop a high throughput and non-destructive approach utilizing computer vision and image-based phenotyping technologies to quantify plant responses. A total number of 34 species were screened in this study, which included: 5 trees, 8 grasses, and 21 forbs and legumes. Most of the species tested were Missouri native and prairie species. Plants were non-destructively imaged, and 15 shape and color phenotypic attributes were extracted utilizing computer vision techniques of PlantCV. Compared to reference soil, all species tested were negatively impacted by the tailings' characteristics, with lowest tolerance generally observed in tree species. However, significant improvement in plant growth and tolerance generally observed with biosolids addition with biomass surpassing reference soil for most legumes. Accumulation of Cu, Pb, and Zn was below Domestic Animal Toxicity Limits in most species. Statistically robust differences in species responses were observed using phenotypic data, such as area, height, width, color, and 9 other morphological attributes. Correlations with destructive data indicated that area displayed the greatest positive correlation with biomass and color the greatest negative correlation with shoot metals. Computer visualization greatly increased the phenotypic data and offers a breakthrough in rapid, high throughput data collection to project site-specific phytostabilization strategies to efficiently restore mine-impacted sites.

Phytoremediation of metal-contaminated rare-earth mining sites using Paspalumconjugatum

Over-exploitation of rare-earth elements causes cadmium (Cd)- and lead (Pb)-contamination of rare-earth mine tailings. Here, Paspalum conjugatum was used as a hyperaccumulating perennial herb to evaluate its phytoextraction potential for removing metals in a hydroponic experiment. Further, an in-situ experiment was conducted for two years (2016-2018) to investigate the potential of P. conjugatum for reducing soil metal concentrations and to assess microbiome recovery on abandoned rare-earth mining land. Pinus massoniana was used for control treatments. We found that P. conjugatum produced metal transfer coefficients of 0.85 and 0.89 for Cd and Pb, respectively. The concentrations of Cd and Pb accumulated in P. conjugatum were 98.33 mg kg^-1 and 137 mg kg^-1, respectively. Using P. conjugatum, soil Pb and Cd concentrations were significantly decreased, and Cd concentrations approached acceptable levels (0.209 mg kg^-1). The bacterial diversity in P. conjugatum-restored soil was higher than that in soil of P. massoniana. The bacterial genera Chloroflexi, Acidobacteria, and Actinobacteria were predominant in the restored soils. P. conjugatum was tolerant to drought and exhibited enhanced enzymatic activity. These results suggest that P. conjugatum can be used for efficient phytoremediation of Pb- and Cd-contaminated soils.