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CFD to Quantify Idealized Intra-Aneurysmal Blood Flow in Response to Regular and Flow Diverter Stent Treatment. FLUIDS 2022. [DOI: 10.3390/fluids7080254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Cerebral aneurysms are pathological dilatations of the vessels supplying the brain. They carry a certain risk of rupture, which in turn, results in a high risk of mortality and morbidity. Flow diverters (FDs) are high-density meshed stents which are implanted in the vessel segment harboring an intracranial aneurysm to cover the entrance of the aneurysm, thus reducing the blood flow into the aneurysm, promoting thrombosis formation and stable occlusion, which prevents rupture or growth of the aneurysm. In the present study, the blood flow in an idealized aneurysm, treated with an FD stent and a regular stent (RS), were modeled and analyzed considering their design, surface area porosity, and flow reduction to investigate the quantitative and qualitative effect of the stent on intra-aneurysmal hemodynamics. CFD simulations were conducted before and after treatment. Significant reductions were observed for most hemodynamic variables with the use of stents, during both the peak systolic and late diastolic cardiac cycles. FD reduces the intra-aneurysmal wall shear stress (WSS), inflow, and aneurysmal flow velocity, and increases the turnover time when compared to the RS; therefore, the possibility of aneurysm thrombotic occlusion is likely to increase, reducing the risk of rupture in cerebral aneurysms.
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Saqr KM, Rashad S, Tupin S, Niizuma K, Hassan T, Tominaga T, Ohta M. What does computational fluid dynamics tell us about intracranial aneurysms? A meta-analysis and critical review. J Cereb Blood Flow Metab 2020; 40:1021-1039. [PMID: 31213162 PMCID: PMC7181089 DOI: 10.1177/0271678x19854640] [Citation(s) in RCA: 40] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Despite the plethora of published studies on intracranial aneurysms (IAs) hemodynamic using computational fluid dynamics (CFD), limited progress has been made towards understanding the complex physics and biology underlying IA pathophysiology. Guided by 1733 published papers, we review and discuss the contemporary IA hemodynamics paradigm established through two decades of IA CFD simulations. We have traced the historical origins of simplified CFD models which impede the progress of comprehending IA pathology. We also delve into the debate concerning the Newtonian fluid assumption used to represent blood flow computationally. We evidently demonstrate that the Newtonian assumption, used in almost 90% of studies, might be insufficient to describe IA hemodynamics. In addition, some fundamental properties of the Navier-Stokes equation are revisited in supplementary material to highlight some widely spread misconceptions regarding wall shear stress (WSS) and its derivatives. Conclusively, our study draws a roadmap for next-generation IA CFD models to help researchers investigate the pathophysiology of IAs.
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Affiliation(s)
- Khalid M Saqr
- Biomedical Flow Dynamics Laboratory, Institute of Fluid Science, Tohoku University, Sendai, Miyagi, Japan.,Department of Mechanical Engineering, College of Engineering and Technology, Arab Academy for Science, Technology and Maritime Transport, Alexandria, Egypt
| | - Sherif Rashad
- Department of Neurosurgical Engineering and Translational Neuroscience, Tohoku University Graduate School of Medicine, Sendai, Miyagi, Japan.,Department of Neurosurgery, Tohoku University Graduate School of Medicine, Sendai, Miyagi, Japan
| | - Simon Tupin
- Biomedical Flow Dynamics Laboratory, Institute of Fluid Science, Tohoku University, Sendai, Miyagi, Japan
| | - Kuniyasu Niizuma
- Department of Neurosurgical Engineering and Translational Neuroscience, Tohoku University Graduate School of Medicine, Sendai, Miyagi, Japan.,Department of Neurosurgery, Tohoku University Graduate School of Medicine, Sendai, Miyagi, Japan.,Department of Neurosurgical Engineering and Translational Neuroscience, Graduate School of Biomedical Engineering, Tohoku University, Sendai, Japan
| | - Tamer Hassan
- Department of Neurosurgery, Alexandria University School of Medicine, Azarita Medical Campus, Alexandria, Egypt
| | - Teiji Tominaga
- Department of Neurosurgery, Tohoku University Graduate School of Medicine, Sendai, Miyagi, Japan
| | - Makoto Ohta
- Biomedical Flow Dynamics Laboratory, Institute of Fluid Science, Tohoku University, Sendai, Miyagi, Japan
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Analysis of differentially expressed circular RNAs in endothelial cells under impinging flow. Mol Cell Probes 2020; 51:101539. [PMID: 32112815 DOI: 10.1016/j.mcp.2020.101539] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2019] [Revised: 02/10/2020] [Accepted: 02/17/2020] [Indexed: 12/21/2022]
Abstract
BACKGROUND Circular RNAs (circRNAs) are a special type of non-coding RNA. To elucidate the relationship between hemodynamics and the function of circRNAs in endothelial cells (ECs), a modified T chamber system was designed and produced for the present experiment. This T chamber system can be used to simulate the hemodynamic environment at the bifurcation of the arteries. METHODS Normal ECs cultured on glass slides were placed in the T chamber, the cell layer was impacted at a flow rate of 500 mL/min, and high-throughput microarrays were used to analyze the expression profiles of circRNAs in ECs. The differential expressions of circRNAs in the ECs treated with impinging flow were compared to those in ECs in conventional culture conditions. The characteristics of the differentially expressed circRNAs were analyzed with bioinformatics and quantitative reverse transcription polymerase chain reaction analyses were conducted to verify results. RESULTS Compared to normal samples, there were changes in the expressions of many circRNAs. A total of 974 circRNAs were differentially expressed, and of these, 378 were upregulated and 596 were downregulated (fold change [FC] ≥ 2 and P < 0.05), which suggests that these circRNAs were altered under hemodynamic conditions. CONCLUSIONS We present the differential expression profiles of circRNAs in ECs after the application of impinging flow; our results indicate that these differentially expressed circRNAs may be involved in inflammatory responses and damage in ECs. The present findings provide valuable information on cRNA profiles as well as clues for future studies that will investigate the roles that circRNAs play in ECs after inflammatory injury.
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A Computational Hemodynamics Analysis on the Correlation Between Energy Loss and Clinical Outcomes for Flow Diverters Treatment of Intracranial Aneurysm. J Med Biol Eng 2019. [DOI: 10.1007/s40846-018-0376-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Hodis S. Correlation of flow complexity parameter with aneurysm rupture status. INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN BIOMEDICAL ENGINEERING 2018; 34:e3131. [PMID: 30021249 DOI: 10.1002/cnm.3131] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2017] [Accepted: 07/07/2018] [Indexed: 05/22/2023]
Abstract
Ruptured aneurysms are known to have complex flow patterns and concentrated inflow jet, but a quantifiable measure for the degree of flow complexity in patient-specific geometries has not been established. Previously, we proposed a flow complexity parameter that provides a quantitative description of the complexity of flow patterns through calculated curvature and torsion of the flow field. The purpose of the current study was to provide an analytic solution of the flow complexity parameter and assess a possible correlation with the rupture status of cerebral aneurysms by analyzing the parameter on five ruptured and five unruptured aneurysms from anterior communicating artery. We analyzed the flow complexity parameter in jet and non-jet regions in order to measure the concentration of the jet flow and the complexity of the non-jet flow. We found that on average, in a ruptured case the jet region is significantly less complex (4.5 times) than the jet region in an unruptured case, while the non-jet region is significantly more complex (3.5 times) than the non-jet region in an unruptured case. We also found a strong positive correlation of the non-jet complexity with dome volume in ruptured cases, but no correlation of jet complexity with dome volume. These findings suggest that a ruptured aneurysm has more than 4 times more concentrated inflow jet and more than 3 times more complex flow patterns in non-jet region than an unruptured aneurysm. This newly implemented kinematic parameter provides a measurable degree of complexity of flow patterns in cerebral aneurysms that can better assess aneurysm rupture risk.
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Affiliation(s)
- Simona Hodis
- Department of Mathematics, Texas A&M University-Kingsville, Kingsville, Texas
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Castro MA, Ahumada Olivares MC, Putman CM, Cebral JR. Unsteady wall shear stress analysis from image-based computational fluid dynamic aneurysm models under Newtonian and Casson rheological models. Med Biol Eng Comput 2014; 52:827-39. [PMID: 25154981 DOI: 10.1007/s11517-014-1189-z] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2014] [Accepted: 08/14/2014] [Indexed: 11/24/2022]
Abstract
The aim of this work was to determine whether or not Newtonian rheology assumption in image-based patient-specific computational fluid dynamics (CFD) cerebrovascular models harboring cerebral aneurysms may affect the hemodynamics characteristics, which have been previously associated with aneurysm progression and rupture. Ten patients with cerebral aneurysms with lobulations were considered. CFD models were reconstructed from 3DRA and 4DCTA images by means of region growing, deformable models, and an advancing front technique. Patient-specific FEM blood flow simulations were performed under Newtonian and Casson rheological models. Wall shear stress (WSS) maps were created and distributions were compared at the end diastole. Regions of lower WSS (lobulation) and higher WSS (neck) were identified. WSS changes in time were analyzed. Maximum, minimum and time-averaged values were calculated and statistically compared. WSS characterization remained unchanged. At high WSS regions, Casson rheology systematically produced higher WSS minimum, maximum and time-averaged values. However, those differences were not statistically significant. At low WSS regions, when averaging over all cases, the Casson model produced higher stresses, although in some cases the Newtonian model did. However, those differences were not significant either. There is no evidence that Newtonian model overestimates WSS. Differences are not statistically significant.
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Affiliation(s)
- Marcelo A Castro
- Grupo de Investigación y Desarrollo en Bioingeniería, Universidad Tecnológica Nacional, Facultad Regional Buenos Aires, CONICET, Medrano 951, CP 1179, Buenos Aires, Argentina,
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Naughton NM, Plourde BD, Stark JR, Hodis S, Abraham JP. Impacts of waveforms on the fluid flow, wall shear stress, and flow distribution in cerebral aneurysms and the development of a universal reduced pressure. ACTA ACUST UNITED AC 2014. [DOI: 10.4236/jbise.2014.71002] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Castro MA. Understanding the role of hemodynamics in the initiation, progression, rupture, and treatment outcome of cerebral aneurysm from medical image-based computational studies. ISRN RADIOLOGY 2013; 2013:602707. [PMID: 24967285 PMCID: PMC4045510 DOI: 10.5402/2013/602707] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Accepted: 06/19/2013] [Indexed: 12/31/2022]
Abstract
About a decade ago, the first image-based computational hemodynamic studies of cerebral aneurysms were presented. Their potential for clinical applications was the result of a right combination of medical image processing, vascular reconstruction, and grid generation techniques used to reconstruct personalized domains for computational fluid and solid dynamics solvers and data analysis and visualization techniques. A considerable number of studies have captivated the attention of clinicians, neurosurgeons, and neuroradiologists, who realized the ability of those tools to help in understanding the role played by hemodynamics in the natural history and management of intracranial aneurysms. This paper intends to summarize the most relevant results in the field reported during the last years.
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Affiliation(s)
- Marcelo A. Castro
- Grupo de Investigación y Desarrollo en Bioingeniería, Facultad Regional Buenos Aires, Universidad Tecnológica Nacional, CONICET, Medrano 951, CP 1179, Buenos Aires, Argentina
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Chen H, Selimovic A, Thompson H, Chiarini A, Penrose J, Ventikos Y, Watton PN. Investigating the influence of haemodynamic stimuli on intracranial aneurysm inception. Ann Biomed Eng 2013; 41:1492-504. [PMID: 23553330 DOI: 10.1007/s10439-013-0794-6] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2012] [Accepted: 03/15/2013] [Indexed: 10/27/2022]
Abstract
We propose a novel method to reconstruct the hypothetical geometry of the healthy vasculature prior to intracranial aneurysm (IA) formation: a Frenet frame is calculated along the skeletonization of the arterial geometry; upstream and downstream boundaries of the aneurysmal segment are expressed in terms of the local Frenet frame basis vectors; the hypothetical healthy geometry is then reconstructed by propagating a closed curve along the skeleton using the local Frenet frames so that the upstream boundary is smoothly morphed into the downstream boundary. This methodology takes into account the tortuosity of the arterial vasculature and requires minimal user subjectivity. The method is applied to 22 clinical cases depicting IAs. Computational fluid dynamic simulations of the vasculature without IA are performed and the haemodynamic stimuli in the location of IA formation are examined. We observe that locally elevated wall shear stress (WSS) and gradient oscillatory number (GON) are highly correlated (20/22 for WSS and 19/22 for GON) with regions susceptible to sidewall IA formation whilst haemodynamic indices associated with the oscillation of the WSS vectors have much lower correlations.
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Affiliation(s)
- Haoyu Chen
- Institute of Biomedical Engineering Department of Engineering Science, University of Oxford, Oxford, UK.
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Cebral JR, Raschi M. Suggested connections between risk factors of intracranial aneurysms: a review. Ann Biomed Eng 2012; 41:1366-83. [PMID: 23242844 DOI: 10.1007/s10439-012-0723-0] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2012] [Accepted: 12/07/2012] [Indexed: 12/01/2022]
Abstract
The purpose of this article is to review studies of aneurysm risk factors and the suggested hypotheses that connect the different risk factors and the underlying mechanisms governing the aneurysm natural history. The result of this work suggests that at the center of aneurysm evolution there is a cycle of wall degeneration and weakening in response to changing hemodynamic loading and biomechanic stress. This progressive wall degradation drives the geometrical evolution of the aneurysm until it stabilizes or ruptures. Risk factors such as location, genetics, smoking, co-morbidities, and hypertension seem to affect different components of this cycle. However, details of these interactions or their relative importance are still not clearly understood.
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Affiliation(s)
- Juan R Cebral
- Center for Computational Fluid Dynamics, George Mason University, Fairfax, VA, USA.
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Arzani A, Shadden SC. Characterization of the transport topology in patient-specific abdominal aortic aneurysm models. PHYSICS OF FLUIDS (WOODBURY, N.Y. : 1994) 2012; 24:81901. [PMID: 22952409 PMCID: PMC3427345 DOI: 10.1063/1.4744984] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2012] [Accepted: 07/19/2012] [Indexed: 05/24/2023]
Abstract
Abdominal aortic aneurysm (AAA) is characterized by disturbed blood flow patterns that are hypothesized to contribute to disease progression. The transport topology in six patient-specific abdominal aortic aneurysms was studied. Velocity data were obtained by image-based computational fluid dynamics modeling, with magnetic resonance imaging providing the necessary simulation parameters. Finite-time Lyapunov exponent (FTLE) fields were computed from the velocity data, and used to identify Lagrangian coherent structures (LCS). The combination of FTLE fields and LCS was used to characterize topological flow features such as separation zones, vortex transport, mixing regions, and flow impingement. These measures offer a novel perspective into AAA flow. It was observed that all aneurysms exhibited coherent vortex formation at the proximal segment of the aneurysm. The evolution of the systolic vortex strongly influences the flow topology in the aneurysm. It was difficult to predict the vortex dynamics from the aneurysm morphology, motivating the application of image-based flow modeling.
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Affiliation(s)
- Amirhossein Arzani
- Department of Mechanical, Materials and Aerospace Engineering, Illinois Institute of Technology, 10 W 32nd St., Chicago, Illinois 60616, USA
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