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Ashoor M, Khorshidi A. Improving signal-to-noise ratio by maximal convolution of longitudinal and transverse magnetization components in MRI: application to the breast cancer detection. Med Biol Eng Comput 2024; 62:941-954. [PMID: 38100039 DOI: 10.1007/s11517-023-02994-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 12/07/2023] [Indexed: 02/22/2024]
Abstract
PURPOSE The extraction of information from images provided by medical imaging systems may be employed to obtain the specific objectives in the various fields. The quantity of signal to noise ratio (SNR) plays a crucial role in displaying the image details. The higher the SNR value, the more the information is available. METHODS In this study, a new function has been formulated using the appropriate suggestions on convolutional combination of the longitudinal and transverse magnetization components related to the relaxation times of T1 and T2 in MRI, where by introducing the distinct index on the maximum value of this function, the new maps are constructed toward the best SNR. Proposed functions were analytically simulated using Matlab software and evaluated with respect to various relaxation times. This proposed method can be applied to any medical images. For instance, the T1- and T2-weighted images of the breast indicated in the reference [35] were selected for modelling and construction of the full width at x maximum (FWxM) map at the different values of x-parameter from 0.01 to 0.955 at 0.035 and 0.015 intervals. The range of x-parameter is between zero and one. To determine the maximum value of the derived SNR, these intervals have been first chosen arbitrarily. However, the smaller this interval, the more precise the value of the x-parameter at which the signal to noise is maximum. RESULTS The results showed that at an index value of x = 0.325, the new map of FWxM (0.325) will be constructed with a maximum derived SNR of 22.7 compared to the SNR values of T1- and T2-maps by 14.53 and 17.47, respectively. CONCLUSION By convolving two orthogonal magnetization vectors, the qualified images with higher new SNR were created, which included the image with the best SNR. In other words, to optimize the adoption of MRI technique and enable the possibility of wider use, an optimal and cost-effective examination has been suggested. Our proposal aims to shorten the MRI examination to further reduce interpretation times while maintaining primary sensitivity. SIGNIFICANCE Our findings may help to quantitatively identify the primary sources of each type of solid and sequential cancer.
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Affiliation(s)
- Mansour Ashoor
- Radiation Applications Research School, Nuclear Science and Technology Research Institute, Tehran, Iran
| | - Abdollah Khorshidi
- Radiation Applications Research School, Nuclear Science and Technology Research Institute, Tehran, Iran.
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Zadeh Shirazi A, Tofighi M, Gharavi A, Gomez GA. The Application of Artificial Intelligence to Cancer Research: A Comprehensive Guide. Technol Cancer Res Treat 2024; 23:15330338241250324. [PMID: 38775067 PMCID: PMC11113055 DOI: 10.1177/15330338241250324] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 03/28/2024] [Accepted: 04/08/2024] [Indexed: 05/25/2024] Open
Abstract
Advancements in AI have notably changed cancer research, improving patient care by enhancing detection, survival prediction, and treatment efficacy. This review covers the role of Machine Learning, Soft Computing, and Deep Learning in oncology, explaining key concepts and algorithms (like SVM, Naïve Bayes, and CNN) in a clear, accessible manner. It aims to make AI advancements understandable to a broad audience, focusing on their application in diagnosing, classifying, and predicting various cancer types, thereby underlining AI's potential to better patient outcomes. Moreover, we present a tabular summary of the most significant advances from the literature, offering a time-saving resource for readers to grasp each study's main contributions. The remarkable benefits of AI-powered algorithms in cancer care underscore their potential for advancing cancer research and clinical practice. This review is a valuable resource for researchers and clinicians interested in the transformative implications of AI in cancer care.
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Affiliation(s)
- Amin Zadeh Shirazi
- Centre for Cancer Biology, SA Pathology and the University of South Australia, Adelaide, SA, Australia
| | - Morteza Tofighi
- Department of Electrical Engineering, Faculty of Engineering, Bu-Ali Sina University, Hamedan, Iran
| | - Alireza Gharavi
- Department of Computer Science, Azad University, Mashhad Branch, Mashhad, Iran
| | - Guillermo A. Gomez
- Centre for Cancer Biology, SA Pathology and the University of South Australia, Adelaide, SA, Australia
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de Sousa PM, Carneiro PC, Pereira GM, Oliveira MM, da Costa Junior CA, de Moura LV, Mattjie C, da Silva AMM, Macedo TAA, Patrocinio AC. A new model for classification of medical CT images using CNN: a COVID-19 case study. MULTIMEDIA TOOLS AND APPLICATIONS 2022; 82:1-29. [PMID: 36570730 PMCID: PMC9760321 DOI: 10.1007/s11042-022-14316-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Revised: 11/18/2022] [Accepted: 12/10/2022] [Indexed: 06/17/2023]
Abstract
SARS-CoV-2 is the causative agent of COVID-19 and leaves characteristic impressions on chest Computed Tomography (CT) images in infected patients and this analysis is performed by radiologists through visual reading of lung images, and failures may occur. In this article, we propose a classification model, called Wavelet Convolutional Neural Network (WCNN) that aims to improve the differentiation of images of patients with COVID-19 from images of patients with other lung infections. The WCNN model was based on a Convolutional Neural Network (CNN) and wavelet transform. The model proposes a new input layer added to the neural network, which was called Wave layer. The hyperparameters values were defined by ablation tests. WCNN was applied to chest CT images to images from two internal and one external repositories. For all repositories, the average results of Accuracy (ACC), Sensitivity (Sen) and Specificity (Sp) were calculated. Subsequently, the average results of the repositories were consolidated, and the final values were ACC = 0.9819, Sen = 0.9783 and Sp = 0.98. The WCNN model uses a new Wave input layer, which standardizes the network input, without using data augmentation, resizing and segmentation techniques, maintaining the integrity of the tomographic image analysis. Thus, applications developed based on WCNN have the potential to assist radiologists with a second opinion in the analysis.1.
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Affiliation(s)
- Pedro Moises de Sousa
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Avila, 2121, Bloco 1E, Uberlândia, MG CEP 38400-000 Brazil
| | - Pedro Cunha Carneiro
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Avila, 2121, Bloco 1E, Uberlândia, MG CEP 38400-000 Brazil
| | - Gabrielle Macedo Pereira
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Avila, 2121, Bloco 1E, Uberlândia, MG CEP 38400-000 Brazil
| | - Mariane Modesto Oliveira
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Avila, 2121, Bloco 1E, Uberlândia, MG CEP 38400-000 Brazil
| | - Carlos Alberto da Costa Junior
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Avila, 2121, Bloco 1E, Uberlândia, MG CEP 38400-000 Brazil
| | - Luis Vinicius de Moura
- Medical Image Computing Laboratory, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681 Partenon, Porto Alegre, RS CEP 90619-900 Brazil
| | - Christian Mattjie
- Medical Image Computing Laboratory, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681 Partenon, Porto Alegre, RS CEP 90619-900 Brazil
| | - Ana Maria Marques da Silva
- Medical Image Computing Laboratory, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681 Partenon, Porto Alegre, RS CEP 90619-900 Brazil
| | - Túlio Augusto Alves Macedo
- Clinic Hospital of the Federal University, Campus Umuarama - Bloco UMU2H - Sala 01 Av. Pará - 1720 - Bairro Umuarama Uberlândia - MG - CEP, Uberlândia, MG 38405-320 Brazil
| | - Ana Claudia Patrocinio
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Avila, 2121, Bloco 1E, Uberlândia, MG CEP 38400-000 Brazil
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Optimized Intelligent Classifier for Early Breast Cancer Detection Using Ultra-Wide Band Transceiver. Diagnostics (Basel) 2022; 12:diagnostics12112870. [PMID: 36428930 PMCID: PMC9689917 DOI: 10.3390/diagnostics12112870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 11/16/2022] [Accepted: 11/16/2022] [Indexed: 11/22/2022] Open
Abstract
Breast cancer is the most common cancer diagnosed in women and the leading cause of cancer-related deaths among women worldwide. The death rate is high because of the lack of early signs. Due to the absence of a cure, immediate treatment is necessary to remove the cancerous cells and prolong life. For early breast cancer detection, it is crucial to propose a robust intelligent classifier with statistical feature analysis that considers parameter existence, size, and location. This paper proposes a novel Multi-Stage Feature Selection with Binary Particle Swarm Optimization (MSFS-BPSO) using Ultra-Wideband (UWB). A collection of 39,000 data samples from non-tumor and with tumor sizes ranging from 2 to 7 mm was created using realistic tissue-like dielectric materials. Subsequently, the tumor models were inserted into the heterogeneous breast phantom. The breast phantom with tumors was imaged and represented in both time and frequency domains using the UWB signal. Consequently, the dataset was fed into the MSFS-BPSO framework and started with feature normalization before it was reduced using feature dimension reduction. Then, the feature selection (based on time/frequency domain) using seven different classifiers selected the frequency domain compared to the time domain and continued to perform feature extraction. Feature selection using Analysis of Variance (ANOVA) is able to distinguish between class-correlated data. Finally, the optimum feature subset was selected using a Probabilistic Neural Network (PNN) classifier with the Binary Particle Swarm Optimization (BPSO) method. The research findings found that the MSFS-BPSO method has increased classification accuracy up to 96.3% and given good dependability even when employing an enormous data sample.
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Research of the Distribution of Tongue Features of Diabetic Population Based on Unsupervised Learning Technology. EVIDENCE-BASED COMPLEMENTARY AND ALTERNATIVE MEDICINE 2022; 2022:7684714. [PMID: 35836832 PMCID: PMC9276481 DOI: 10.1155/2022/7684714] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 06/04/2022] [Accepted: 06/11/2022] [Indexed: 01/27/2023]
Abstract
Background. The prevalence of diabetes increases year by year, posing a severe threat to human health. Current treatments are difficult to prevent the progression of diabetes and its complications. It is imperative to carry out individualized treatment of diabetes, but current diagnostic methods are difficult to specify an individualized treatment plan. Objective. Clarify the distribution law of tongue features of the diabetic population, and provide the diagnostic basis for individualized treatment of traditional Chinese medicine (TCM) in the treatment of diabetes. Methods. We use the TFDA-1 tongue diagnosis instrument to collect tongue images of people with diabetes and accurately calculate the color features, texture features, and tongue coating ratio features through the Tongue Diagnosis Analysis System (TDAS). Then, we used K-means and Self-organizing Maps (SOM) networks to analyze the distribution of tongue features in diabetic people. Statistical analysis of TDAS features was used to identify differences between clusters. Results. The silhouette coefficient of the K-means clustering result is 0.194, and the silhouette coefficient of the SOM clustering result is 0.127. SOM Cluster 3 and Cluster 4 are derived from K-means Cluster 1, and the intersections account for (76.7% 97.5%) and (22.3% and 70.4%), respectively. K-means Cluster 2 and SOM Cluster 1 are highly overlapping, and the intersection accounts for the ratios of 66.9% and 95.0%. K-means Cluster 3 and SOM Cluster 2 are highly overlaid, and the intersection ratio is 94.1% and 82.1%. For the clustering results of K-means, TB-a and TC-a of Cluster 3 are the highest (
), TB-a of Cluster 2 is the lowest (
), and TB-a of Cluster 1 is between Cluster 2 and Cluster 3 (
). Cluster 1 has the highest TB-b and TC-b (
), Cluster 2 has the lowest TB-b and TC-b (
), and TB-b and TC-b of Cluster 3 are between Cluster 1 and Cluster 2 (
). Cluster 1 has the highest TB-ASM and TC-ASM (
), Cluster 3 has the lowest TB-ASM and TC-ASM (
), and TB-ASM and TC-ASM of Cluster 2 are between the Cluster 1 and Cluster 3 (
). CON, ENT, and MEAN show the opposite trend. Cluster 2 had the highest Per-all (
). SOM divides K-means Cluster 1 into two categories. There is almost no difference in texture features between Cluster 3 and Cluster 4 in the SOM clustering results. Cluster 3’s TB-L, TC-L, and Per-all are lower than Cluster 4 (
), Cluster 3’s TB-a, TC-a, TB-b, TC-b, and Per-part are higher than Cluster 4 (
). Conclusions. The precise tongue image features calculated by TDAS are the basis for characterizing the disease state of diabetic people. Unsupervised learning technology combined with statistical analysis is an important means to discover subtle changes in the tongue features of diabetic people. The machine vision analysis method based on unsupervised machine learning technology realizes the classification of the diabetic population based on fine tongue features. It provides a diagnostic basis for the designated diabetes TCM treatment plan.
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Li F, Zhou L, Wang Y, Chen C, Yang S, Shan F, Liu L. Modeling long-range dependencies for weakly supervised disease classification and localization on chest X-ray. Quant Imaging Med Surg 2022; 12:3364-3378. [PMID: 35655823 PMCID: PMC9131331 DOI: 10.21037/qims-21-1117] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 03/14/2022] [Indexed: 12/31/2023]
Abstract
BACKGROUND Computer-aided diagnosis based on chest X-ray (CXR) is an exponentially growing field of research owing to the development of deep learning, especially convolutional neural networks (CNNs). However, due to the intrinsic locality of convolution operations, CNNs cannot model long-range dependencies. Although vision transformers (ViTs) have recently been proposed to alleviate this limitation, those trained on patches cannot learn any dependencies for inter-patch pixels and thus, are insufficient for medical image detection. To address this problem, in this paper, we propose a CXR detection method which integrates CNN with a ViT for modeling patch-wise and inter-patch dependencies. METHODS We experimented on the ChestX-ray14 dataset and followed the official training-test set split. Because the training data only had global annotations, the detection network was weakly supervised. A DenseNet with a feature pyramid structure was designed and integrated with an adaptive ViT to model inter-patch and patch-wise long-range dependencies and obtain fine-grained feature maps. We compared the performance using our method with that of other disease detection methods. RESULTS For disease classification, our method achieved the best result among all the disease detection methods, with a mean area under the curve (AUC) of 0.829. For lesion localization, our method achieved significantly higher intersection of the union (IoU) scores on the test images with bounding box annotations than did the other detection methods. The visualized results showed that our predictions were more accurate and detailed. Furthermore, evaluation of our method in an external validation dataset demonstrated its generalization ability. CONCLUSIONS Our proposed method achieves the new state of the art for thoracic disease classification and weakly supervised localization. It has potential to assist in clinical decision-making.
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Affiliation(s)
- Fangyun Li
- Institute of Biomedical Sciences, Fudan University, Shanghai, China
| | - Lingxiao Zhou
- Institute of Microscale Optoelectronics, Shenzhen University, Shenzhen, China
| | - Yunpeng Wang
- Institute of Biomedical Sciences, Fudan University, Shanghai, China
| | - Chuan Chen
- Department of Radiology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China
| | - Shuyi Yang
- Department of Radiology, Zhongshan Hospital, Fudan University, Shanghai, China
- Shanghai Institute of Medical Imaging, Shanghai, China
| | - Fei Shan
- Department of Radiology, Shanghai Public Health Clinical Center, Fudan University, Shanghai, China
| | - Lei Liu
- Institute of Biomedical Sciences, Fudan University, Shanghai, China
- School of Basic Medical Sciences, Fudan University, Shanghai, China
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de Sousa PM, Carneiro PC, Oliveira MM, Pereira GM, da Costa Junior CA, de Moura LV, Mattjie C, da Silva AMM, Patrocinio AC. COVID-19 classification in X-ray chest images using a new convolutional neural network: CNN-COVID. RESEARCH ON BIOMEDICAL ENGINEERING 2022. [PMCID: PMC7781433 DOI: 10.1007/s42600-020-00120-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/21/2023]
Abstract
Purpose COVID-19 causes lung inflammation and lesions, and chest X-ray and computed tomography images are remarkably suitable for differentiating the new disease from patients with other lung diseases. In this paper, we propose a computer model to classify X-ray images of patients diagnosed with COVID-19. Chest X-ray exams were chosen over computed tomography scans because they are low cost, results are quickly obtained, and X-ray equipment is readily available. Methods A new CNN network, called CNN-COVID, has been developed to classify X-ray patient’s images. Images from two different datasets were used. The images of Dataset I is originated from the COVID-19 image data collection and the ChestXray14 repository, and the images of Dataset II belong to the BIMCV COVID-19+ repository. To assess the accuracy of the network, 10 training and testing sessions were performed in both datasets. A confusion matrix was generated to evaluate the model’s performance and calculate the following metrics: accuracy (ACC), sensitivity (SE), and specificity (SP). In addition, Receiver Operating Characteristic (ROC) curves and Areas Under the Curve (AUCs) were also considered. Results After running 10 tests, the average accuracy for Dataset I and Dataset II was 0.9787 and 0.9839, respectively. Since the weights of the best test results were applied in the validation, it was obtained the accuracy of 0.9722 for Dataset I and 0.9884 for Dataset II. Conclusions The results showed that the CNN-COVID is a promising tool to help physicians classify chest images with pneumonia, considering pneumonia caused by COVID-19 and pneumonia due to other causes.
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Affiliation(s)
- Pedro Moisés de Sousa
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Ávila, 2121, Bloco 1E, CEP, Uberlândia, MG 38400-000 Brazil
| | - Pedro Cunha Carneiro
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Ávila, 2121, Bloco 1E, CEP, Uberlândia, MG 38400-000 Brazil
| | - Mariane Modesto Oliveira
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Ávila, 2121, Bloco 1E, CEP, Uberlândia, MG 38400-000 Brazil
| | - Gabrielle Macedo Pereira
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Ávila, 2121, Bloco 1E, CEP, Uberlândia, MG 38400-000 Brazil
| | - Carlos Alberto da Costa Junior
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Ávila, 2121, Bloco 1E, CEP, Uberlândia, MG 38400-000 Brazil
| | - Luis Vinicius de Moura
- Medical Image Computing Laboratory, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681 Partenon, CEP, Porto Alegre, RS 90619-900 Brazil
| | - Christian Mattjie
- Medical Image Computing Laboratory, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681 Partenon, CEP, Porto Alegre, RS 90619-900 Brazil
| | - Ana Maria Marques da Silva
- Medical Image Computing Laboratory, Pontifical Catholic University of Rio Grande do Sul, Av. Ipiranga, 6681 Partenon, CEP, Porto Alegre, RS 90619-900 Brazil
| | - Ana Claudia Patrocinio
- Biomedical Lab, Faculty of Electrical Engineering, Federal University of Uberlândia, Campus Sta Mônica, Av. João Naves de Ávila, 2121, Bloco 1E, CEP, Uberlândia, MG 38400-000 Brazil
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Alshantti A, Rasheed A. Self-Organising Map Based Framework for Investigating Accounts Suspected of Money Laundering. Front Artif Intell 2022; 4:761925. [PMID: 34970642 PMCID: PMC8713506 DOI: 10.3389/frai.2021.761925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Accepted: 11/04/2021] [Indexed: 11/29/2022] Open
Abstract
There has been an emerging interest by financial institutions to develop advanced systems that can help enhance their anti-money laundering (AML) programmes. In this study, we present a self-organising map (SOM) based approach to predict which bank accounts are possibly involved in money laundering cases, given their financial transaction histories. Our method takes advantage of the competitive and adaptive properties of SOM to represent the accounts in a lower-dimensional space. Subsequently, categorising the SOM and the accounts into money laundering risk levels and proposing investigative strategies enables us to measure the classification performance. Our results indicate that our framework is well capable of identifying suspicious accounts already investigated by our partner bank, using both proposed investigation strategies. We further validate our model by analysing the performance when modifying different parameters in our dataset.
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Affiliation(s)
- Abdallah Alshantti
- Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway
| | - Adil Rasheed
- Department of Engineering Cybernetics, Norwegian University of Science and Technology, Trondheim, Norway.,Department of Mathematics and Cybernetics, SINTEF Digital, Trondheim, Norway
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Existing and Emerging Breast Cancer Detection Technologies and Its Challenges: A Review. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app112210753] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Breast cancer is the most leading cancer occurring in women and is a significant factor in female mortality. Early diagnosis of breast cancer with Artificial Intelligent (AI) developments for breast cancer detection can lead to a proper treatment to affected patients as early as possible that eventually help reduce the women mortality rate. Reliability issues limit the current clinical detection techniques, such as Ultra-Sound, Mammography, and Magnetic Resonance Imaging (MRI) from screening images for precise elucidation. The capability to detect a tumor in early diagnosis, expensive, relatively long waiting time due to pandemic and painful procedure for a patient to perform. This article aims to review breast cancer screening methods and recent technological advancements systematically. In addition, this paper intends to explore the progression and challenges of AI in breast cancer detection. The next state of the art between image and signal processing will be presented, and their performance is compared. This review will facilitate the researcher to insight the view of breast cancer detection technologies advancement and its challenges.
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Mammogram mass segmentation and detection using Legendre neural network-based optimal threshold. Med Biol Eng Comput 2021; 59:947-955. [PMID: 33818716 DOI: 10.1007/s11517-021-02348-4] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Accepted: 03/17/2021] [Indexed: 10/21/2022]
Abstract
Breast cancer is a leading cause of mortality affecting women across the world. Early detection and diagnosis can decrease the mortality rate due to this cancer. Machine learning-based models are gaining popularity for biomedical applications due to the ability of nonlinear mapping between input and output patterns using supervised training phase. The research work in the paper is focused on the optimal adaptive threshold for mammogram mass segmentation, and detection in order to assist radiologist in accurate diagnosis Legendre neural network with single layer is used to develop the model, and the training is performed through Block Based Normalized Sign-Sign Least Mean Square (BBNSSLMS) algorithm. Legendre neural network expands the input vector using standard Legendre polynomial, and the recursive update principle is followed for the weight vector in higher dimension. The optimal threshold is indirectly used for proper segmentation of mammogram mass. The proposed segmentation method involves training phase with 30 images and testing phase by 151 images obtained from standard Mammogram Image Analysis Society (MIAS) database. The proposed model achieved a sensitivity of 95% and accuracy of 96% with false positives per image calculated as 1.19. • Threshold selection is carried out using single-layer Legendre NN with reduced computational complexity. BNSSLMS algorithm process the data samples block wise instead of sample by sample basis. Optimal threshold is generated according to the varying image properties which helps in correct segmentation and detection. • Due to sparse nature of the adaptive model, more numbers of weight coefficients are tending to zero which also helps in faster convergence. Mammogram Mass Detection Steps.
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Zadeh Shirazi A, Fornaciari E, McDonnell MD, Yaghoobi M, Cevallos Y, Tello-Oquendo L, Inca D, Gomez GA. The Application of Deep Convolutional Neural Networks to Brain Cancer Images: A Survey. J Pers Med 2020; 10:E224. [PMID: 33198332 PMCID: PMC7711876 DOI: 10.3390/jpm10040224] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 11/10/2020] [Accepted: 11/10/2020] [Indexed: 12/15/2022] Open
Abstract
In recent years, improved deep learning techniques have been applied to biomedical image processing for the classification and segmentation of different tumors based on magnetic resonance imaging (MRI) and histopathological imaging (H&E) clinical information. Deep Convolutional Neural Networks (DCNNs) architectures include tens to hundreds of processing layers that can extract multiple levels of features in image-based data, which would be otherwise very difficult and time-consuming to be recognized and extracted by experts for classification of tumors into different tumor types, as well as segmentation of tumor images. This article summarizes the latest studies of deep learning techniques applied to three different kinds of brain cancer medical images (histology, magnetic resonance, and computed tomography) and highlights current challenges in the field for the broader applicability of DCNN in personalized brain cancer care by focusing on two main applications of DCNNs: classification and segmentation of brain cancer tumors images.
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Affiliation(s)
- Amin Zadeh Shirazi
- Centre for Cancer Biology, SA Pathology and the University of South of Australia, Adelaide, SA 5000, Australia;
- Computational Learning Systems Laboratory, UniSA STEM, University of South Australia, Mawson Lakes, SA 5095, Australia;
| | - Eric Fornaciari
- Department of Mathematics of Computation, University of California, Los Angeles (UCLA), Los Angeles, CA 90095, USA;
| | - Mark D. McDonnell
- Computational Learning Systems Laboratory, UniSA STEM, University of South Australia, Mawson Lakes, SA 5095, Australia;
| | - Mahdi Yaghoobi
- Electrical and Computer Engineering Department, Islamic Azad University, Mashhad Branch, Mashad 917794-8564, Iran;
| | - Yesenia Cevallos
- College of Engineering, Universidad Nacional de Chimborazo, Riobamba 060150, Ecuador; (Y.C.); (L.T.-O.); (D.I.)
| | - Luis Tello-Oquendo
- College of Engineering, Universidad Nacional de Chimborazo, Riobamba 060150, Ecuador; (Y.C.); (L.T.-O.); (D.I.)
| | - Deysi Inca
- College of Engineering, Universidad Nacional de Chimborazo, Riobamba 060150, Ecuador; (Y.C.); (L.T.-O.); (D.I.)
| | - Guillermo A. Gomez
- Centre for Cancer Biology, SA Pathology and the University of South of Australia, Adelaide, SA 5000, Australia;
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Yavuz E, Eyupoglu C. An effective approach for breast cancer diagnosis based on routine blood analysis features. Med Biol Eng Comput 2020; 58:1583-1601. [PMID: 32436139 DOI: 10.1007/s11517-020-02187-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 05/01/2020] [Indexed: 12/24/2022]
Abstract
Breast cancer is a widespread disease and one of the primary causes of cancer mortality among women all over the world. Computer-aided methods are used to assist medical doctors to make early diagnosis of the disease. The aim of this study is to build an effective prediction model for breast cancer diagnosis based on anthropometric data and parameters collected through routine blood analysis. The proposed approach innovatively exploits principal component analysis (PCA) technique cascaded by median filtering so as to transform original features into a form of containing less distractive noise not to cause overfitting. Since a generalized regression neural network (GRNN) model is adopted to classify patterns of the transformed features, the computational load imposed in the training of artificial neural network model is kept minimized thanks to the non-iterative nature of GRNN training. The proposed method has been devised and tested on the recent Breast Cancer Coimbra Dataset (BCCD) that contains 9 clinical features measured for each of 116 subjects. Outperforming all of the existing studies on BCCD, our method achieved a mean accuracy rate of 0.9773. Experimental results evidence that this study achieves the best prediction performance ever reported on this dataset. The fact that our proposed approach has accomplished such a boosted performance of breast cancer diagnosis based on routine blood analysis features offers a great potential to be used in a widespread manner to detect the disease in its inception phase. Graphical abstract.
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Affiliation(s)
- Erdem Yavuz
- Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Bursa Technical University, Yildirim, Bursa, Turkey.
| | - Can Eyupoglu
- Department of Computer Engineering, Air Force Academy, National Defence University, Yesilyurt, Istanbul, Turkey
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Zadeh Shirazi A, Fornaciari E, Bagherian NS, Ebert LM, Koszyca B, Gomez GA. DeepSurvNet: deep survival convolutional network for brain cancer survival rate classification based on histopathological images. Med Biol Eng Comput 2020; 58:1031-1045. [PMID: 32124225 PMCID: PMC7188709 DOI: 10.1007/s11517-020-02147-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2019] [Accepted: 02/14/2020] [Indexed: 12/14/2022]
Abstract
Histopathological whole slide images of haematoxylin and eosin (H&E)-stained biopsies contain valuable information with relation to cancer disease and its clinical outcomes. Still, there are no highly accurate automated methods to correlate histolopathological images with brain cancer patients' survival, which can help in scheduling patients therapeutic treatment and allocate time for preclinical studies to guide personalized treatments. We now propose a new classifier, namely, DeepSurvNet powered by deep convolutional neural networks, to accurately classify in 4 classes brain cancer patients' survival rate based on histopathological images (class I, 0-6 months; class II, 6-12 months; class III, 12-24 months; and class IV, >24 months survival after diagnosis). After training and testing of DeepSurvNet model on a public brain cancer dataset, The Cancer Genome Atlas, we have generalized it using independent testing on unseen samples. Using DeepSurvNet, we obtained precisions of 0.99 and 0.8 in the testing phases on the mentioned datasets, respectively, which shows DeepSurvNet is a reliable classifier for brain cancer patients' survival rate classification based on histopathological images. Finally, analysis of the frequency of mutations revealed differences in terms of frequency and type of genes associated to each class, supporting the idea of a different genetic fingerprint associated to patient survival. We conclude that DeepSurvNet constitutes a new artificial intelligence tool to assess the survival rate in brain cancer. Graphical abstract A DCNN model was generated to accurately predict survival rates of brain cancer patients (classified in 4 different classes) accurately. After training the model using images from H&E stained tissue biopsies from The Cancer Genome Atlas database (TCGA, left), the model can predict for each patient, based on a histological image (top right), its survival class accurately (bottom right).
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Affiliation(s)
- Amin Zadeh Shirazi
- Centre for Cancer Biology, SA Pathology and University of South Australia, UniSA CRI Building, North Terrace, Adelaide, SA, 5001, Australia.
| | - Eric Fornaciari
- Department of Mathematics of Computation, University of California, Los Angeles (UCLA), Los Angeles, CA, USA
| | | | - Lisa M Ebert
- Centre for Cancer Biology, SA Pathology and University of South Australia, UniSA CRI Building, North Terrace, Adelaide, SA, 5001, Australia
| | | | - Guillermo A Gomez
- Centre for Cancer Biology, SA Pathology and University of South Australia, UniSA CRI Building, North Terrace, Adelaide, SA, 5001, Australia.
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de Lima MD, de Oliveira Roque E Lima J, Barbosa RM. Medical data set classification using a new feature selection algorithm combined with twin-bounded support vector machine. Med Biol Eng Comput 2020; 58:519-528. [PMID: 31900818 DOI: 10.1007/s11517-019-02100-z] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2018] [Accepted: 12/16/2019] [Indexed: 10/25/2022]
Abstract
Early diagnosis and treatment are the most important strategies to prevent deaths from several diseases. In this regard, data mining and machine learning techniques have been useful tools to help minimize errors and to provide useful information for diagnosis. Our paper aims to present a new feature selection algorithm. In order to validate our study, we used eight benchmark data sets which are commonly used among researchers who developed machine learning methods for medical data classification. The experiment has shown that the performance of our proposed new feature selection method combined with twin-bounded support vector machine (FSTBSVM) is very efficient. The robustness of the FSTBSVM is examined using classification accuracy, analysis of sensitivity, and specificity. The proposed FSTBSVM is a very promising technique for classification, and the results show that the proposed method is capable of producing good results with fewer features than the original data sets. Graphical abstract Model using a new feature selection and grid search with 10-fold CV to optimize model parameters in our FSTBSVM.
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Affiliation(s)
- Márcio Dias de Lima
- Instituto Federal de Educação, Ciência e Tecnologia de Goiás, R. 75 - St. Central, Goiânia, GO, CEP 74055-110, Brazil.,Instituto de Informática, Universidade Federal de Goiás, Alameda Palmeiras, Quadra D, Câmpus Samambaia, Goiânia, GO, CEP 74690-900, Brazil
| | - Juliana de Oliveira Roque E Lima
- Faculdade de Enfermagem, Universidade Federal de Goiás, Rua 227 Qd 68, S/N - Setor Leste Universitário, Goiânia, GO, CEP 74605-080, Brazil
| | - Rommel M Barbosa
- Instituto de Informática, Universidade Federal de Goiás, Alameda Palmeiras, Quadra D, Câmpus Samambaia, Goiânia, GO, CEP 74690-900, Brazil.
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Yang K, Zeng Z, Peng H, Jiang Y. Attitudes Of Chinese Cancer Patients Toward The Clinical Use Of Artificial Intelligence. Patient Prefer Adherence 2019; 13:1867-1875. [PMID: 31802856 PMCID: PMC6830378 DOI: 10.2147/ppa.s225952] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/04/2019] [Accepted: 10/16/2019] [Indexed: 02/05/2023] Open
Abstract
PURPOSE Artificial intelligence (AI) plays a substantial role in many domains, including medical fields. However, we still lack evidence to support whether or not cancer patients will accept the clinical use of AI. This research aims to assess the attitudes of Chinese cancer patients toward the clinical use of artificial intelligence in medicine (AIM), and to analyze the possible influencing factors. PATIENTS AND METHODS A questionnaire was delivered to 527 participants. Targeted people were Chinese cancer patients who were informed of their cancer diagnosis. RESULTS The effective response rate was 76.3% (402/527). Most cancer patients trusted AIMs in both stages of diagnosis and treatment, and participants who had heard of AIMs were more likely to trust them in the diagnosis phase. When an AIM's diagnosis diverged from a human doctor' s, ethnic minorities, and those who had received traditional Chinese medicine (TCM), had never received chemotherapy, were more likely to choose "AIM", and when an AIM's therapeutic advice diverged from a human doctor's, male participants, and those who had received TCM or surgery, were more likely to choose "AIM". CONCLUSION Most Chinese cancer patients believed in the AIM to some extent. Nevertheless, most still thought that oncology physicians were more trustworthy when their opinions diverged. Participants' gender, race, treatment received, and AIM related knowledge might influence their attitudes toward the AIM. Most participants thought AIM would assist oncology physicians in the future, while little really believed that oncology physicians would completely be replaced.
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Affiliation(s)
- Keyi Yang
- Department of Head and Neck Oncology, Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, People’s Republic of China
| | - Zhi Zeng
- Department of Head and Neck Oncology, Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, People’s Republic of China
| | - Hu Peng
- Department of Head and Neck Oncology, Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, People’s Republic of China
| | - Yu Jiang
- Department of Head and Neck Oncology, Cancer Center, West China Hospital, Sichuan University, Chengdu, Sichuan, People’s Republic of China
- Correspondence: Yu Jiang Department of Head and Neck Oncology, Cancer Center, West China Hospital, Sichuan University, No. 37, Guo Xue Lane, Chengdu, Sichuan610041, People’s Republic of ChinaTel/fax +86 28 85423278 Email
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