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El Chemaly T, Athayde Neves C, Fu F, Hargreaves B, Blevins NH. From microscope to head-mounted display: integrating hand tracking into microsurgical augmented reality. Int J Comput Assist Radiol Surg 2024:10.1007/s11548-024-03224-w. [PMID: 39162975 DOI: 10.1007/s11548-024-03224-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 06/24/2024] [Indexed: 08/21/2024]
Abstract
PURPOSE The operating microscope plays a central role in middle and inner ear procedures that involve working within tightly confined spaces under limited exposure. Augmented reality (AR) may improve surgical guidance by combining preoperative computed tomography (CT) imaging that can provide precise anatomical information, with intraoperative microscope video feed. With current technology, the operator must manually interact with the AR interface using a computer. The latter poses a disruption in the surgical flow and is suboptimal for maintaining the sterility of the operating environment. The purpose of this study was to implement and evaluate free-hand interaction concepts leveraging hand tracking and gesture recognition as an attempt to reduce the disruption during surgery and improve human-computer interaction. METHODS An electromagnetically tracked surgical microscope was calibrated using a custom 3D printed calibration board. This allowed the augmentation of the microscope feed with segmented preoperative CT-derived virtual models. Ultraleap's Leap Motion Controller 2 was coupled to the microscope and used to implement hand-tracking capabilities. End-user feedback was gathered from a surgeon during development. Finally, users were asked to complete tasks that involved interacting with the virtual models, aligning them to physical targets, and adjusting the AR visualization. RESULTS Following observations and user feedback, we upgraded the functionalities of the hand interaction system. User feedback showed the users' preference for the new interaction concepts that provided minimal disruption of the surgical workflow and more intuitive interaction with the virtual content. CONCLUSION We integrated hand interaction concepts, typically used with head-mounted displays (HMDs), into a surgical stereo microscope system intended for AR in otologic microsurgery. The concepts presented in this study demonstrated a more favorable approach to human-computer interaction in a surgical context. They hold potential for a more efficient execution of surgical tasks under microscopic AR guidance.
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Affiliation(s)
- Trishia El Chemaly
- Department of Bioengineering, Stanford University, Stanford, California, USA.
- Department of Otolaryngology, Stanford School of Medicine, Stanford, California, USA.
- Department of Radiology, Stanford School of Medicine, Stanford, California, USA.
| | - Caio Athayde Neves
- Department of Otolaryngology, Stanford School of Medicine, Stanford, California, USA
- Faculty of Medicine, University of Brasília, Brasília, Brazil
| | - Fanrui Fu
- Department of Otolaryngology, Stanford School of Medicine, Stanford, California, USA
| | - Brian Hargreaves
- Department of Bioengineering, Stanford University, Stanford, California, USA
- Department of Radiology, Stanford School of Medicine, Stanford, California, USA
- Department of Electrical Engineering, Stanford University, Stanford, California, USA
| | - Nikolas H Blevins
- Department of Otolaryngology, Stanford School of Medicine, Stanford, California, USA
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Aweeda M, Adegboye F, Yang SF, Topf MC. Enhancing Surgical Vision: Augmented Reality in Otolaryngology-Head and Neck Surgery. JOURNAL OF MEDICAL EXTENDED REALITY 2024; 1:124-136. [PMID: 39091667 PMCID: PMC11290041 DOI: 10.1089/jmxr.2024.0010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/15/2024] [Indexed: 08/04/2024]
Abstract
Augmented reality (AR) technology has become widely established in otolaryngology-head and neck surgery. Over the past 20 years, numerous AR systems have been investigated and validated across the subspecialties, both in cadaveric and in live surgical studies. AR displays projected through head-mounted devices, microscopes, and endoscopes, most commonly, have demonstrated utility in preoperative planning, intraoperative guidance, and improvement of surgical decision-making. Specifically, they have demonstrated feasibility in guiding tumor margin resections, identifying critical structures intraoperatively, and displaying patient-specific virtual models derived from preoperative imaging, with millimetric accuracy. This review summarizes both established and emerging AR technologies, detailing how their systems work, what features they offer, and their clinical impact across otolaryngology subspecialties. As AR technology continues to advance, its integration holds promise for enhancing surgical precision, simulation training, and ultimately, improving patient outcomes.
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Affiliation(s)
- Marina Aweeda
- Department of Otolaryngology—Head and Neck Surgery, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Feyisayo Adegboye
- Department of Otolaryngology—Head and Neck Surgery, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Shiayin F. Yang
- Department of Otolaryngology—Head and Neck Surgery, Vanderbilt University Medical Center, Nashville, Tennessee, USA
| | - Michael C. Topf
- Department of Otolaryngology—Head and Neck Surgery, Vanderbilt University Medical Center, Nashville, Tennessee, USA
- School of Engineering, Vanderbilt University, Nashville, Tennessee, USA
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El Chemaly T, Athayde Neves C, Leuze C, Hargreaves B, H Blevins N. Stereoscopic calibration for augmented reality visualization in microscopic surgery. Int J Comput Assist Radiol Surg 2023; 18:2033-2041. [PMID: 37450175 DOI: 10.1007/s11548-023-02980-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Accepted: 05/26/2023] [Indexed: 07/18/2023]
Abstract
PURPOSE Middle and inner ear procedures target hearing loss, infections, and tumors of the temporal bone and lateral skull base. Despite the advances in surgical techniques, these procedures remain challenging due to limited haptic and visual feedback. Augmented reality (AR) may improve operative safety by allowing the 3D visualization of anatomical structures from preoperative computed tomography (CT) scans on real intraoperative microscope video feed. The purpose of this work was to develop a real-time CT-augmented stereo microscope system using camera calibration and electromagnetic (EM) tracking. METHODS A 3D printed and electromagnetically tracked calibration board was used to compute the intrinsic and extrinsic parameters of the surgical stereo microscope. These parameters were used to establish a transformation between the EM tracker coordinate system and the stereo microscope image space such that any tracked 3D point can be projected onto the left and right images of the microscope video stream. This allowed the augmentation of the microscope feed of a 3D printed temporal bone with its corresponding CT-derived virtual model. Finally, the calibration board was also used for evaluating the accuracy of the calibration. RESULTS We evaluated the accuracy of the system by calculating the registration error (RE) in 2D and 3D in a microsurgical laboratory setting. Our calibration workflow achieved a RE of 0.11 ± 0.06 mm in 2D and 0.98 ± 0.13 mm in 3D. In addition, we overlaid a 3D CT model on the microscope feed of a 3D resin printed model of a segmented temporal bone. The system exhibited small latency and good registration accuracy. CONCLUSION We present the calibration of an electromagnetically tracked surgical stereo microscope for augmented reality visualization. The calibration method achieved accuracy within a range suitable for otologic procedures. The AR process introduces enhanced visualization of the surgical field while allowing depth perception.
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Affiliation(s)
- Trishia El Chemaly
- Department of Bioengineering, Stanford University, Stanford, CA, USA.
- Department of Otolaryngology, Stanford School of Medicine, Stanford, CA, USA.
- Department of Radiology, Stanford School of Medicine, Stanford, CA, USA.
| | - Caio Athayde Neves
- Department of Otolaryngology, Stanford School of Medicine, Stanford, CA, USA
- Faculty of Medicine, University of Brasília, Brasília, Brazil
| | - Christoph Leuze
- Department of Radiology, Stanford School of Medicine, Stanford, CA, USA
- Wu Tsai Neurosciences Institute, Stanford University, Stanford, CA, USA
| | - Brian Hargreaves
- Department of Bioengineering, Stanford University, Stanford, CA, USA
- Department of Radiology, Stanford School of Medicine, Stanford, CA, USA
- Department of Electrical Engineering, Stanford University, Stanford, CA, USA
| | - Nikolas H Blevins
- Department of Otolaryngology, Stanford School of Medicine, Stanford, CA, USA
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Chen JX, Yu S, Ding AS, Lee DJ, Welling DB, Carey JP, Gray ST, Creighton FX. Augmented Reality in Otology/Neurotology: A Scoping Review with Implications for Practice and Education. Laryngoscope 2023; 133:1786-1795. [PMID: 36519414 PMCID: PMC10267287 DOI: 10.1002/lary.30515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 10/29/2022] [Accepted: 11/21/2022] [Indexed: 12/23/2022]
Abstract
OBJECTIVE To determine how augmented reality (AR) has been applied to the field of otology/neurotology, examine trends and gaps in research, and provide an assessment of the future potential of this technology within surgical practice and education. DATA SOURCES PubMed, EMBASE, and Cochrane Library were assessed from their inceptions through October 2022. A manual bibliography search was also conducted. REVIEW METHODS A scoping review was conducted and reported according to PRISMA-ScR guidelines. Data from studies describing the application of AR to the field of otology/neurotology were evaluated, according to a priori inclusion/exclusion criteria. Exclusion criteria included non-English language articles, abstracts, letters/commentaries, conference papers, and review articles. RESULTS Eighteen articles covering a diverse range of AR platforms were included. Publication dates spanned from 2007 to 2022 and the rate of publication increased over this time. Six of 18 studies were case series in human patients although the remaining were proof of concepts in cadaveric/artificial/animal models. The most common application of AR was for surgical navigation (14 of 18 studies). Computed tomography was the most common source of input data. Few studies noted potential applications to surgical training. CONCLUSION Interest in the application of AR to otology/neurotology is growing based on the number of recent publications that use a broad range of hardware, software, and AR platforms. Large gaps in research such as the need for submillimeter registration error must be addressed prior to adoption in the operating room and for educational purposes. LEVEL OF EVIDENCE N/A Laryngoscope, 133:1786-1795, 2023.
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Affiliation(s)
- Jenny X. Chen
- Department of Otolaryngology–Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD
| | | | - Andy S. Ding
- Department of Otolaryngology–Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD
| | - Daniel J. Lee
- Department of Otolaryngology–Head and Neck Surgery, Massachusetts Eye and Ear, Boston, MA
- Department of Otolaryngology–Head and Neck Surgery, Harvard Medical School, Boston, MA
| | - D. Brad Welling
- Department of Otolaryngology–Head and Neck Surgery, Massachusetts Eye and Ear, Boston, MA
- Department of Otolaryngology–Head and Neck Surgery, Harvard Medical School, Boston, MA
| | - John P. Carey
- Department of Otolaryngology–Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD
| | - Stacey T. Gray
- Department of Otolaryngology–Head and Neck Surgery, Massachusetts Eye and Ear, Boston, MA
- Department of Otolaryngology–Head and Neck Surgery, Harvard Medical School, Boston, MA
| | - Francis X. Creighton
- Department of Otolaryngology–Head and Neck Surgery, Johns Hopkins University School of Medicine, Baltimore, MD
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Li Z, Zhou L, Tan S, Tang A. Application of UNETR for automatic cochlear segmentation in temporal bone CTs. Auris Nasus Larynx 2023; 50:212-217. [PMID: 35970625 DOI: 10.1016/j.anl.2022.06.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Revised: 06/02/2022] [Accepted: 06/30/2022] [Indexed: 11/29/2022]
Abstract
OBJECTIVE To investigate the feasibility of a deep learning method based on a UNETR model for fully automatic segmentation of the cochlea in temporal bone CT images. METHODS The normal temporal bone CTs of 77 patients were used in 3D U-Net and UNETR model automatic cochlear segmentation. Tests were performed on two types of CT datasets and cochlear deformity datasets. RESULTS Through training the UNETR model, when batch_size=1, the Dice coefficient of the normal cochlear test set was 0.92, which was higher than that of the 3D U-Net model; on the GE 256 CT, SE-DS CT and Cochlear Deformity CT dataset tests, the Dice coefficients were 0.91, 0.93, 0 93, respectively. CONCLUSION According to the anatomical characteristics of the temporal bone, the use of the UNETR model can achieve fully automatic segmentation of the cochlea and obtain an accuracy close to manual segmentation. This method is feasible and has high accuracy.
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Affiliation(s)
- Zhenhua Li
- Department of Otorhinolaryngology Head and Neck Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530000, China
| | - Langtao Zhou
- School of Computer Science and Cyber Engineering, Guangzhou University, Guangzhou, China
| | - Songhua Tan
- Department of Otorhinolaryngology Head and Neck Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530000, China
| | - Anzhou Tang
- Department of Otorhinolaryngology Head and Neck Surgery, The First Affiliated Hospital of Guangxi Medical University, Nanning, Guangxi 530000, China.
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Hussain R, Guigou C, Lalande A, Bozorg Grayeli A. Vision-Based Augmented Reality System for Middle Ear Surgery: Evaluation in Operating Room Environment. Otol Neurotol 2022; 43:385-394. [PMID: 34889824 DOI: 10.1097/mao.0000000000003441] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Abstract
HYPOTHESIS Augmented reality (AR) solely based on image features is achievable in operating room conditions and its precision is compatible with otological surgery. BACKGROUND The objective of this work was to evaluate the performance of a vision-based AR system for middle ear surgery in the operating room conditions. METHODS Nine adult patients undergoing ossicular procedures were included in this prospective study. AR was obtained by combining real-time video from the operating microscope with the virtual image obtained from the preoperative computed tomography (CT)-scan. Initial registration between the video and the virtual CT image was achieved using manual selection of six points on the tympanic sulcus. Patient-microscope movements during the procedure were tracked using image-feature matching algorithm. The microscope was randomly moved at an approximated speed of 5 mm/s in the three axes of space and rotation for 180 seconds. The accuracy of the system was assessed by calculating the distance between each fiducial point selected on the video image and its corresponding point on the scanner. RESULTS AR could be obtained for at least 3 minutes in seven out of nine patients. The overlay fiducial and target registration errors were 0.38 ± 0.23 mm (n = 7) and 0.36 ± 0.15 mm (n = 5) respectively, with a drift error of 1.2 ± 0.5 μm/s. The system was stable throughout the procedure and achieved a refresh rate of 12 fps. Moderate bleeding and introduction of surgical instruments did not compromise the performance of the system. CONCLUSION The AR system yielded sub-millimetric accuracy and remained stable throughout the experimental study despite patient-microscope movements and field of view obtrusions.
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Affiliation(s)
- Raabid Hussain
- ImVia, Laboratory of Imagery and Artificial Vision, EA 7535, University of Burgundy
| | - Caroline Guigou
- ImVia, Laboratory of Imagery and Artificial Vision, EA 7535, University of Burgundy
- Department Otolaryngology-Head and Neck Surgery
| | - Alain Lalande
- ImVia, Laboratory of Imagery and Artificial Vision, EA 7535, University of Burgundy
- Department of Radiology, Dijon University Hospital, Dijon, France
| | - Alexis Bozorg Grayeli
- ImVia, Laboratory of Imagery and Artificial Vision, EA 7535, University of Burgundy
- Department Otolaryngology-Head and Neck Surgery
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Robotics, automation, active electrode arrays, and new devices for cochlear implantation: A contemporary review. Hear Res 2022; 414:108425. [PMID: 34979455 DOI: 10.1016/j.heares.2021.108425] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 12/16/2021] [Accepted: 12/23/2021] [Indexed: 01/14/2023]
Abstract
In the last two decades, cochlear implant surgery has evolved into a minimally invasive, hearing preservation surgical technique. The devices used during surgery have benefited from technological advances that have allowed modification and possible improvement of the surgical technique. Robotics has recently gained popularity in otology as an effective tool to overcome the surgeon's limitations such as tremor, drift and accurate force control feedback in laboratory testing. Cochlear implantation benefits from robotic assistance in several steps during the surgical procedure: (i) during the approach to the middle ear by automated mastoidectomy and posterior tympanotomy or through a tunnel from the postauricular skin to the middle ear (i.e. direct cochlear access); (ii) a minimally invasive cochleostomy by a robot-assisted drilling tool; (iii) alignment of the correct insertion axis on the basal cochlear turn; (iv) insertion of the electrode array with a motorized insertion tool. In recent years, the development of bone-attached parallel robots and image-guided surgical robotic systems has allowed the first successful cochlear implantation procedures in patients via a single hole drilled tunnel. Several other robotic systems, new materials, sensing technologies applied to the electrodes, and smart devices have been developed, tested in experimental models and finally some have been used in patients with the aim of reducing trauma in cochleostomy, and permitting slow and more accurate insertion of the electrodes. Despite the promising results in laboratory tests in terms of minimal invasiveness, reduced trauma and better hearing preservation, so far, no clinical benefits on residual hearing preservation or better speech performance have been demonstrated. Before these devices can become the standard approach for cochlear implantation, several points still need to be addressed, primarily cost and duration of the procedure. One can hope that improvement in the cost/benefit ratio will expand the technology to every cochlear implantation procedure. Laboratory research and clinical studies on patients should continue with the aim of making intracochlear implant insertion an atraumatic and reversible gesture for total preservation of the inner ear structure and physiology.
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Marzi C, Prinzen T, Haag J, Klenzner T, Mathis-Ullrich F. Continuous Feature-Based Tracking of the Inner Ear for Robot-Assisted Microsurgery. Front Surg 2021; 8:742160. [PMID: 34869554 PMCID: PMC8639496 DOI: 10.3389/fsurg.2021.742160] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 10/21/2021] [Indexed: 11/18/2022] Open
Abstract
Robotic systems for surgery of the inner ear must enable highly precise movement in relation to the patient. To allow for a suitable collaboration between surgeon and robot, these systems should not interrupt the surgical workflow and integrate well in existing processes. As the surgical microscope is a standard tool, present in almost every microsurgical intervention and due to it being in close proximity to the situs, it is predestined to be extended by assistive robotic systems. For instance, a microscope-mounted laser for ablation. As both, patient and microscope are subject to movements during surgery, a well-integrated robotic system must be able to comply with these movements. To solve the problem of on-line registration of an assistance system to the situs, the standard of care often utilizes marker-based technologies, which require markers being rigidly attached to the patient. This not only requires time for preparation but also increases invasiveness of the procedure and the line of sight of the tracking system may not be obstructed. This work aims at utilizing the existing imaging system for detection of relative movements between the surgical microscope and the patient. The resulting data allows for maintaining registration. Hereby, no artificial markers or landmarks are considered but an approach for feature-based tracking with respect to the surgical environment in otology is presented. The images for tracking are obtained by a two-dimensional RGB stream of a surgical microscope. Due to the bony structure of the surgical site, the recorded cochleostomy scene moves nearly rigidly. The goal of the tracking algorithm is to estimate motion only from the given image stream. After preprocessing, features are detected in two subsequent images and their affine transformation is computed by a random sample consensus (RANSAC) algorithm. The proposed method can provide movement feedback with up to 93.2 μm precision without the need for any additional hardware in the operating room or attachment of fiducials to the situs. In long term tracking, an accumulative error occurs.
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Affiliation(s)
- Christian Marzi
- Health Robotics and Automation, Institute for Anthropomatics and Robotics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Tom Prinzen
- Department of Otorhinolaryngology, Head & Neck Surgery, University-Hospital Düsseldorf, Düsseldorf, Germany
| | - Julia Haag
- Health Robotics and Automation, Institute for Anthropomatics and Robotics, Karlsruhe Institute of Technology, Karlsruhe, Germany
| | - Thomas Klenzner
- Department of Otorhinolaryngology, Head & Neck Surgery, University-Hospital Düsseldorf, Düsseldorf, Germany
| | - Franziska Mathis-Ullrich
- Health Robotics and Automation, Institute for Anthropomatics and Robotics, Karlsruhe Institute of Technology, Karlsruhe, Germany
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Augmented Reality Based Transmodiolar Cochlear Implantation. Otol Neurotol 2021; 43:190-198. [PMID: 34855687 DOI: 10.1097/mao.0000000000003437] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
HYPOTHESIS Transmodiolar auditory implantation via the middle ear cavity could be possible using an augmented reality system (ARS). BACKGROUND There is no clear landmark to indicate the cochlear apex or the modiolar axis. The ARS seems to be a promising tool for transmodiolar implantation by combining information from the preprocedure computed tomography scan (CT-scan) images to the real-time video of the surgical field. METHODS Eight human temporal bone resin models were included (five adults and three children). The procedure started by the identification of the modiolar axis on the preprocedure CT-scan followed by a 3D reconstruction of the images. Information on modiolar location and navigational guidance was supplemented to the reconstructed model, which was then registered with the surgical video using a point-based approach. Relative movements between the phantom and the microscope were tracked using image feature-based motion tracking. Based on the information provided via the ARS, the surgeon implanted the electrode-array inside the modiolus after drilling the helicothrema. Postprocedure CT-scan images were acquired to evaluate the registration error and the implantation accuracy. RESULTS The implantation could be conducted in all cases with a 2D registration error of 0.4 ± 0.24 mm. The mean entry point error was 0.6 ± 1.00 mm and the implant angular error 13.5 ± 8.93 degrees (n = 8), compatible with the procedure requirements. CONCLUSION We developed an image-based ARS to identify the extremities and the axis of the cochlear modiolus on intraprocedure videos. The system yielded submillimetric accuracy for implantation and remained stable throughout the experimental study.
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Chawdhary G, Shoman N. Emerging artificial intelligence applications in otological imaging. Curr Opin Otolaryngol Head Neck Surg 2021; 29:357-364. [PMID: 34459798 DOI: 10.1097/moo.0000000000000754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Abstract
PURPOSE OF REVIEW To highlight the recent literature on artificial intelligence (AI) pertaining to otological imaging and to discuss future directions, obstacles and opportunities. RECENT FINDINGS The main themes in the recent literature centre around automated otoscopic image diagnosis and automated image segmentation for application in virtual reality surgical simulation and planning. Other applications that have been studied include identification of tinnitus MRI biomarkers, facial palsy analysis, intraoperative augmented reality systems, vertigo diagnosis and endolymphatic hydrops ratio calculation in Meniere's disease. Studies are presently at a preclinical, proof-of-concept stage. SUMMARY The recent literature on AI in otological imaging is promising and demonstrates the future potential of this technology in automating certain imaging tasks in a healthcare environment of ever-increasing demand and workload. Some studies have shown equivalence or superiority of the algorithm over physicians, albeit in narrowly defined realms. Future challenges in developing this technology include the compilation of large high quality annotated datasets, fostering strong collaborations between the health and technology sectors, testing the technology within real-world clinical pathways and bolstering trust among patients and physicians in this new method of delivering healthcare.
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Affiliation(s)
- Gaurav Chawdhary
- ENT Department, Royal Hallamshire Hospital, Broomhall, Sheffield, UK
| | - Nael Shoman
- ENT Department, Queen Elizabeth II Health Sciences Centre, Halifax, Nova Scotia, Canada
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Girum KB, Crehange G, Lalande A. Learning With Context Feedback Loop for Robust Medical Image Segmentation. IEEE TRANSACTIONS ON MEDICAL IMAGING 2021; 40:1542-1554. [PMID: 33606627 DOI: 10.1109/tmi.2021.3060497] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Deep learning has successfully been leveraged for medical image segmentation. It employs convolutional neural networks (CNN) to learn distinctive image features from a defined pixel-wise objective function. However, this approach can lead to less output pixel interdependence producing incomplete and unrealistic segmentation results. In this paper, we present a fully automatic deep learning method for robust medical image segmentation by formulating the segmentation problem as a recurrent framework using two systems. The first one is a forward system of an encoder-decoder CNN that predicts the segmentation result from the input image. The predicted probabilistic output of the forward system is then encoded by a fully convolutional network (FCN)-based context feedback system. The encoded feature space of the FCN is then integrated back into the forward system's feed-forward learning process. Using the FCN-based context feedback loop allows the forward system to learn and extract more high-level image features and fix previous mistakes, thereby improving prediction accuracy over time. Experimental results, performed on four different clinical datasets, demonstrate our method's potential application for single and multi-structure medical image segmentation by outperforming the state of the art methods. With the feedback loop, deep learning methods can now produce results that are both anatomically plausible and robust to low contrast images. Therefore, formulating image segmentation as a recurrent framework of two interconnected networks via context feedback loop can be a potential method for robust and efficient medical image analysis.
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12
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Hussain R, Lalande A, Girum KB, Guigou C, Bozorg Grayeli A. Automatic segmentation of inner ear on CT-scan using auto-context convolutional neural network. Sci Rep 2021; 11:4406. [PMID: 33623074 PMCID: PMC7902630 DOI: 10.1038/s41598-021-83955-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 02/10/2021] [Indexed: 01/22/2023] Open
Abstract
Temporal bone CT-scan is a prerequisite in most surgical procedures concerning the ear such as cochlear implants. The 3D vision of inner ear structures is crucial for diagnostic and surgical preplanning purposes. Since clinical CT-scans are acquired at relatively low resolutions, improved performance can be achieved by registering patient-specific CT images to a high-resolution inner ear model built from accurate 3D segmentations based on micro-CT of human temporal bone specimens. This paper presents a framework based on convolutional neural network for human inner ear segmentation from micro-CT images which can be used to build such a model from an extensive database. The proposed approach employs an auto-context based cascaded 2D U-net architecture with 3D connected component refinement to segment the cochlear scalae, semicircular canals, and the vestibule. The system was formulated on a data set composed of 17 micro-CT from public Hear-EU dataset. A Dice coefficient of 0.90 and Hausdorff distance of 0.74 mm were obtained. The system yielded precise and fast automatic inner-ear segmentations.
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Affiliation(s)
- Raabid Hussain
- ImViA Laboratory, University of Burgundy Franche Comte, Dijon, France.
| | - Alain Lalande
- ImViA Laboratory, University of Burgundy Franche Comte, Dijon, France.,Medical Imaging Department, University Hospital of Dijon, Dijon, France
| | | | - Caroline Guigou
- ImViA Laboratory, University of Burgundy Franche Comte, Dijon, France.,Otolaryngology Department, University Hospital of Dijon, Dijon, France
| | - Alexis Bozorg Grayeli
- ImViA Laboratory, University of Burgundy Franche Comte, Dijon, France.,Otolaryngology Department, University Hospital of Dijon, Dijon, France
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