Multivariate multi-scale weighted permutation entropy analysis of EEG complexity for Alzheimer's disease

Neuroimaging markers of aberrant brain activity and treatment response in schizophrenia patients based on brain complexity

The complexity of brain activity reflects its ability to process information, adapt to environmental changes, and transition between states. However, it remains unclear how schizophrenia (SZ) affects brain activity complexity, particularly its dynamic changes. This study aimed to investigate the abnormal patterns of brain activity complexity in SZ, their relationship with cognitive deficits, and the impact of antipsychotic medication. Forty-four drug-naive first-episode (DNFE) SZ patients and thirty demographically matched healthy controls (HC) were included. Functional MRI-based sliding window analysis was utilized for the first time to calculate weighted permutation entropy to characterize complex patterns of brain activity in SZ patients before and after 12 weeks of risperidone treatment. Results revealed reduced complexity in the caudate, putamen, and pallidum at baseline in SZ patients compared to HC, with reduced complexity in the left caudate positively correlated with Continuous Performance Test (CPT) and Category Fluency Test scores. After treatment, the complexity of the left caudate increased. Regions with abnormal complexity showed decreased functional connectivity, with complexity positively correlated with connectivity strength. We observed that the dynamic complexity of the brain exhibited the characteristic of spontaneous, recurring "complexity drop", potentially reflecting transient state transitions in the resting brain. Compared to HC, patients exhibited reduced scope, intensity, and duration of complexity drop, all of which improved after treatment. Reduced duration was negatively correlated with CPT scores and positively with clinical symptoms. The results suggest that abnormalities in brain activity complexity and its dynamic changes may underlie cognitive deficits and clinical symptoms in SZ patients. Antipsychotic treatment partially restores these abnormalities, highlighting their potential as indicators of treatment efficacy and biomarkers for personalized therapy.

Application of cross-channel multiscale permutation entropy in measuring multichannel data complexity

Entropy is a pivotal concept in nonlinear dynamics, revealing chaos, self-organization, and information transmission in complex systems. Permutation entropy, due to its computational efficiency and lower data length requirements, has found widespread use in various fields. However, in the age of multi-channel data, existing permutation entropy methods are limited in capturing cross-channel information. This paper presents cross-channel multiscale permutation entropy algorithm, and the proposed algorithm can effectively capture the cross-channel information of multi-channel dataset. The major modification lies in the concurrent frequency counting of specific events during the calculation steps. The algorithm improves phase space reconstruction and mapping, enhancing the capability of multi-channel permutation entropy methods to extract cross-channel information. Simulation and real-world multi-channel data analysis demonstrate the superiority of the proposed algorithm in distinguishing different types of data. The improvement is not limited to one specific algorithm and can be applied to various multi-channel permutation entropy variants, making them more effective in uncovering information across different channels.

Multi-Frequency Entropy for Quantifying Complex Dynamics and Its Application on EEG Data

Multivariate entropy algorithms have proven effective in the complexity dynamic analysis of electroencephalography (EEG) signals, with researchers commonly configuring the variables as multi-channel time series. However, the complex quantification of brain dynamics from a multi-frequency perspective has not been extensively explored, despite existing evidence suggesting interactions among brain rhythms at different frequencies. In this study, we proposed a novel algorithm, termed multi-frequency entropy (mFreEn), enhancing the capabilities of existing multivariate entropy algorithms and facilitating the complexity study of interactions among brain rhythms of different frequency bands. Firstly, utilizing simulated data, we evaluated the mFreEn's sensitivity to various noise signals, frequencies, and amplitudes, investigated the effects of parameters such as the embedding dimension and data length, and analyzed its anti-noise performance. The results indicated that mFreEn demonstrated enhanced sensitivity and reduced parameter dependence compared to traditional multivariate entropy algorithms. Subsequently, the mFreEn algorithm was applied to the analysis of real EEG data. We found that mFreEn exhibited a good diagnostic performance in analyzing resting-state EEG data from various brain disorders. Furthermore, mFreEn showed a good classification performance for EEG activity induced by diverse task stimuli. Consequently, mFreEn provides another important perspective to quantify complex dynamics.

Is EEG Entropy a Useful Measure for Alzheimer's Disease?

BACKGROUND

The number of individuals diagnosed with Alzheimer's disease (AD) has increased, and it is estimated to continue rising in the coming years. The diagnosis of this disease is challenging due to variations in onset and course, its diverse clinical manifestations, and the indications for measuring deposit biomarkers. Hence, there is a need to develop more precise and less invasive diagnostic tools. Multiple studies have considered using electroencephalography (EEG) entropy measures as an indicator of the onset and course of AD. Entropy is deemed suitable as a potential indicator based on the discovery that variations in its complexity can be associated with specific pathologies such as AD.

METHODOLOGY

Following PRISMA guidelines, a literature search was conducted in 4 scientific databases, and 40 articles were analyzed after discarding and filtering.

RESULTS

There is a diversity in entropy measures; however, Sample Entropy (SampEn) and Multiscale Entropy (MSE) are the most widely used (21/40). In general, it is found that when comparing patients with controls, patients exhibit lower entropy (20/40) in various areas. Findings of correlation with the level of cognitive decline are less consistent, and with neuropsychiatric symptoms (2/40) or treatment response less explored (2/40), although most studies show lower entropy with greater severity. Machine learning-based studies show good discrimination capacity.

CONCLUSIONS

There is significant difficulty in comparing multiple studies due to their heterogeneity; however, changes in Multiscale Entropy (MSE) scales or a decrease in entropy levels are considered useful for determining the presence of AD and measuring its severity.

An in-depth analysis of parameter settings and probability distributions of specific ordinal patterns in the Shannon permutation entropy during different states of consciousness in humans

As electrical activity in the brain has complex and dynamic properties, the complexity measure permutation entropy (PeEn) has proven itself to reliably distinguish consciousness states recorded by the EEG. However, it has been shown that the focus on specific ordinal patterns instead of all of them produced similar results. Moreover, parameter settings influence the resulting PeEn value. We evaluated the impact of the embedding dimension m and the length of the EEG segment on the resulting PeEn. Moreover, we analysed the probability distributions of monotonous and non-occurring ordinal patterns in different parameter settings. We based our analyses on simulated data as well as on EEG recordings from volunteers, obtained during stable anaesthesia levels at defined, individualised concentrations. The results of the analysis on the simulated data show a dependence of PeEn on different influencing factors such as window length and embedding dimension. With the EEG data, we demonstrated that the probability P of monotonous patterns performs like PeEn in lower embedding dimension (m = 3, AUC = 0.88, [0.7, 1] in both), whereas the probability P of non-occurring patterns outperforms both methods in higher embedding dimensions (m = 5, PeEn: AUC = 0.91, [0.77, 1]; P(non-occurring patterns): AUC = 1, [1, 1]). We showed that the accuracy of PeEn in distinguishing consciousness states changes with different parameter settings. Furthermore, we demonstrated that for the purpose of separating wake from anaesthesia EEG solely pieces of information used for PeEn calculation, i.e., the probability of monotonous patterns or the number of non-occurring patterns may be equally functional.

Kernel-based Nonlinear Manifold Learning for EEG-based Functional Connectivity Analysis and Channel Selection with Application to Alzheimer's Disease

Dynamical, causal, and cross-frequency coupling analysis using the electroencephalogram (EEG) has gained significant attention for diagnosing and characterizing neurological disorders. Selecting important EEG channels is crucial for reducing computational complexity in implementing these methods and improving classification accuracy. In neuroscience, measures of (dis)similarity between EEG channels are often used as functional connectivity (FC) features, and important channels are selected via feature selection. Developing a generic measure of (dis)similarity is important for FC analysis and channel selection. In this study, learning of (dis)similarity information within the EEG is achieved using kernel-based nonlinear manifold learning. The focus is on FC changes and, thereby, EEG channel selection. Isomap and Gaussian Process Latent Variable Model (Isomap-GPLVM) are employed for this purpose. The resulting kernel (dis)similarity matrix is used as a novel measure of linear and nonlinear FC between EEG channels. The analysis of EEG from healthy controls (HC) and patients with mild to moderate Alzheimer's disease (AD) are presented as a case study. Classification results are compared with other commonly used FC measures. Our analysis shows significant differences in FC between bipolar channels of the occipital region and other regions (i.e. parietal, centro-parietal, and fronto-central) between AD and HC groups. Furthermore, our results indicate that FC changes between channels along the fronto-parietal region and the rest of the EEG are important in diagnosing AD. Our results and its relation to functional networks are consistent with those obtained from previous studies using fMRI, resting-state fMRI and EEG.

TMS-EEG perturbation biomarkers for Alzheimer's disease patients classification

The combination of TMS and EEG has the potential to capture relevant features of Alzheimer's disease (AD) pathophysiology. We used a machine learning framework to explore time-domain features characterizing AD patients compared to age-matched healthy controls (HC). More than 150 time-domain features including some related to local and distributed evoked activity were extracted from TMS-EEG data and fed into a Random Forest (RF) classifier using a leave-one-subject out validation approach. The best classification accuracy, sensitivity, specificity and F1 score were of 92.95%, 96.15%, 87.94% and 92.03% respectively when using a balanced dataset of features computed globally across the brain. The feature importance and statistical analysis revealed that the maximum amplitude of the post-TMS signal, its Hjorth complexity and the amplitude of the TEP calculated in the window 45-80 ms after the TMS-pulse were the most relevant features differentiating AD patients from HC. TMS-EEG metrics can be used as a non-invasive tool to further understand the AD pathophysiology and possibly contribute to patients' classification as well as longitudinal disease tracking.

Effects of Pharmacological Treatments in Alzheimer's Disease: Permutation Entropy-Based EEG Complexity Study

Alzheimer's disease (AD) is a neurodegenerative brain disease affecting cognitive and physical functioning. The currently available pharmacological treatments for AD mainly contain cholinesterase inhibitors (AChE-I) and N-methyl-D-aspartic acid (NMDA) receptor antagonists (i.e., memantine). Because brain signals have complex nonlinear dynamics, there has been an increase in interest in researching complexity changes in the time series of brain signals in individuals with AD. In this study, we explore the electroencephalographic (EEG) complexity for making better observation of pharmacological therapy-based treatment effects on AD patients using the permutation entropy (PE) method. We examined EEG sub-band (delta, theta, alpha, beta, and gamma) complexity in de-novo, monotherapy (AChE-I), dual therapy (AChE-I and memantine) receiving AD participants compared with healthy elderly controls. We showed that each frequency band depicts its own complexity profile, which is regionally altered between groups. These alterations were also found to be associated with global cognitive scores. Overall, our findings indicate that entropy measures could be useful to show medication effects in AD.

Brain Complexity Predicts Response to Adrenocorticotropic Hormone in Infantile Epileptic Spasms Syndrome: A Retrospective Study

INTRODUCTION

Infantile epileptic spasms syndrome (IESS) is an age-specific and severe epileptic encephalopathy. Although adrenocorticotropic hormone (ACTH) is currently considered the preferred first-line treatment, it is not always effective and may cause side effects. Therefore, seeking a reliable biomarker to predict the treatment response could benefit clinicians in modifying treatment options.

METHODS

In this study, the complexities of electroencephalogram (EEG) recordings from 15 control subjects and 40 patients with IESS before and after ACTH therapy were retrospectively reviewed using multiscale entropy (MSE). These 40 patients were divided into responders and nonresponders according to their responses to ACTH.

RESULTS

The EEG complexities of the patients with IESS were significantly lower than those of the healthy controls. A favorable response to treatment showed increasing complexity in the γ band but exhibited a reduction in the β/α-frequency band, and again significantly elevated in the δ band, wherein the latter was prominent in the parieto-occipital regions in particular. Greater reduction in complexity was significantly linked with poorer prognosis in general. Occipital EEG complexities in the γ band revealed optimized performance in recognizing response to the treatment, corresponding to the area under the receiver operating characteristic curves as 0.8621, while complexities of the δ band served as a fair predictor of unfavorable outcomes globally.

CONCLUSION

We suggest that optimizing frequency-specific complexities over critical brain regions may be a promising strategy to facilitate predicting treatment response in IESS.

Comprehensive HRV estimation pipeline in Python using Neurokit2: Application to sleep physiology

NeuroKit2 is a Python Toolbox for Neurophysiological Signal Processing. The presented method is an adaptation of NeuroKit2 to simplify and automate computation of the various mathematical estimates of heart rate variability (HRV) or similar time series. By default, the present approach accepts as input electrocardiogram's R-R intervals (RRIs) or peak times, i.e., timestamp of each consecutive R peak, but the RRIs or peak times can also stem from other biosensors such as photoplethysmography (PPGs) or represent more general kinds of biological or non-biological time series oscillations. The data may be derived from a single or several sources such as conventional univariate heart rate time series or intermittently weakly coupled fetal and maternal heart rate data. The method describes preprocessing and computation of an output of 124 HRV measures including measures with a dynamic, time-series-specific optimal time delay-based complexity estimation with a user-definable time window length. I also provide an additional layer of HRV estimation looking at the temporal fluctuations of the HRV estimates themselves, an approach not yet widely used in the field, yet showing promise (doi: 10.3389/fphys.2017.01112). To demonstrate the application of the methodology, I present an approach to studying the dynamic relationships between sleep state architecture and multi-dimensional HRV metrics in 31 subjects. NeuroKit2's documentation is extensive. Here, I attempted to simplify things summarizing all you need to produce the most extensive HRV estimation output available to date as open source and all in one place. The presented Jupyter notebooks allow the user to run HRV analyses quickly and at scale on univariate or multivariate time-series data. I gratefully acknowledge the excellent support from the NeuroKit team.•Univariate or multivariate time series input; ingestion, preprocessing, and computation of 124 HRV metrics.•Estimation of intra- and inter-individual higher order temporal fluctuations of HRV metrics.•Application to a sleep dataset recorded using Apple Watch and expert sleep labeling.

Particle Swarm Optimization Fractional Slope Entropy: A New Time Series Complexity Indicator for Bearing Fault Diagnosis

Slope entropy (SlEn) is a time series complexity indicator proposed in recent years, which has shown excellent performance in the fields of medical and hydroacoustics. In order to improve the ability of SlEn to distinguish different types of signals and solve the problem of two threshold parameters selection, a new time series complexity indicator on the basis of SlEn is proposed by introducing fractional calculus and combining particle swarm optimization (PSO), named PSO fractional SlEn (PSO-FrSlEn). Then we apply PSO-FrSlEn to the field of fault diagnosis and propose a single feature extraction method and a double feature extraction method for rolling bearing fault based on PSO-FrSlEn. The experimental results illustrated that only PSO-FrSlEn can classify 10 kinds of bearing signals with 100% classification accuracy by using double features, which is at least 4% higher than the classification accuracies of the other four fractional entropies.

qEEG Analysis in the Diagnosis of Alzheimer’s Disease: A Comparison of Functional Connectivity and Spectral Analysis

Alzheimer’s disease (AD) is a brain disorder that is mainly characterized by a progressive degeneration of neurons in the brain and decline of cognitive abilities. This study compared an FFT-based spectral analysis against a functional connectivity analysis for the diagnosis of AD. Both quantitative methods were applied on an EEG dataset including 20 diagnosed AD patients and 20 age-matched healthy controls (HC). The obtained results showed an advantage of the functional connectivity analysis when compared to the spectral analysis; while the latter could not find any significant differences between the AD and HC groups, the functional connectivity analysis showed statistically higher synchronization levels in the AD group in the lower frequency bands (delta and theta), suggesting a ‘phase-locked’ state in AD-affected brains. Further comparison of functional connectivity between the homotopic regions confirmed that the traits of AD were localized to the centro-parietal and centro-temporal areas in the theta frequency band (4–8 Hz). This study applies a neural metric for Alzheimer’s detection from a data science perspective rather than from a neuroscience one and shows that the combination of bipolar derivations with phase synchronization yields similar results to comparable studies employing alternative analysis methods.

Alzheimer's Disease Analysis Algorithm Based on No-threshold Recurrence Plot Convolution Network

Alzheimer's disease is a neurological disorder characterized by progressive cognitive dysfunction and behavioral impairment that occurs in old. Early diagnosis and treatment of Alzheimer's disease is great significance. Electroencephalography (EEG) signals can be used to detect Alzheimer's disease due to its non-invasive advantage. To solve the problem of insufficient analysis by single-channel EEG signal, we analyze the relationship between multiple channels and build PLV framework. To solve the problem of insufficient representation of 1D signal, a threshold-free recursive plot convolution network was constructed to realize 2D representation. To solve the problem of insufficient EEG signal characterization, a fusion algorithm of clinical features and imaging features was proposed to detect Alzheimer's disease. Experimental results show that the algorithm has good performance and robustness.

Cortical Complexity and Connectivity during Isoflurane-induced General Anesthesia: A Rat Study

OBJECTIVE

The investigation of neurophysiologic mechanisms of anesthetic drug-induced loss of consciousness (LOC) by using the entropy, complexity, and information integration theories at the mesoscopic level has been a hot topic in recent years. However, systematic research is still lacking.

APPROACH

We analyzed electrocorticography (ECoG) data recorded from nine rats during isoflurane-induced unconsciousness. To characterize the complexity and connectivity changes, we investigated ECoG power, symbolic dynamic-based entropy (i.e., permutation entropy (PE)), complexity (i.e., permutation Lempel-Ziv complexity (PLZC)), information integration (i.e., permutation cross mutual information (PCMI)), and PCMI-based cortical brain networks in the frontal, parietal, and occipital cortical regions.

MAIN RESULTS

Firstly, LOC was accompanied by a raised power in the ECoG beta (12-30 Hz) but a decreased power in the high gamma (55-95 Hz) frequency band in all three brain regions. Secondly, PE and PLZC showed similar change trends in the lower frequency band (0.1-45 Hz), declining after LOC (p<0.05) and increasing after recovery of consciousness (p<0.001). Thirdly, intra-frontal and inter-frontal-parietal PCMI declined after LOC, in both lower (0.1-45Hz) and higher frequency bands (55-95Hz) (p<0.001). Finally, the local network parameters of the nodal clustering coefficient and nodal efficiency in the frontal region decreased after LOC, in both the lower and higher frequency bands (p<0.05). Moreover, global network parameters of the normalized average clustering coefficient and small world index increased slightly after LOC in the lower frequency band. However, this increase was not statistically significant.

SIGNIFICANCE

The PE, PLZC, PCMI and PCMI-based brain networks are effective metrics for qualifying the effects of isoflurane.

Double Feature Extraction Method of Ship-Radiated Noise Signal Based on Slope Entropy and Permutation Entropy

In order to accurately identify various types of ships and develop coastal defenses, a single feature extraction method based on slope entropy (SlEn) and a double feature extraction method based on SlEn combined with permutation entropy (SlEn&PE) are proposed. Firstly, SlEn is used for the feature extraction of ship-radiated noise signal (SNS) compared with permutation entropy (PE), dispersion entropy (DE), fluctuation dispersion entropy (FDE), and reverse dispersion entropy (RDE), so that the effectiveness of SlEn is verified, and SlEn has the highest recognition rate calculated by the k-Nearest Neighbor (KNN) algorithm. Secondly, SlEn is combined with PE, DE, FDE, and RDE, respectively, to extract the feature of SNS for a higher recognition rate, and SlEn&PE has the highest recognition rate after the calculation of the KNN algorithm. Lastly, the recognition rates of SlEn and SlEn&PE are compared, and the recognition rates of SlEn&PE are higher than SlEn by 4.22%. Therefore, the double feature extraction method proposed in this paper is more effective in the application of ship type recognition.

Coupling feature extraction method of resting state EEG Signals from amnestic mild cognitive impairment with type 2 diabetes mellitus based on weight permutation conditional mutual information

This study aimed to find a good coupling feature extraction method to effectively analyze resting state EEG signals (rsEEG) of amnestic mild cognitive impairment(aMCI) with type 2 diabetes mellitus(T2DM) and normal control (NC) with T2DM. A method of EEG signal coupling feature extraction based on weight permutation conditional mutual information (WPCMI) was proposed in this research. With the WPCMI method, coupling feature strength of two time series in Alpha1, Alpha2, Beta1, Beta2 and Gamma bands for aMCI with T2DM and NC with T2DM could be extracted respectively. Then selected three frequency bands coupling feature matrix with the help of multi-spectral image transformation method to map it as spectral image characteristics. And finally classified these characteristics through the convolution neural network method(CNN). For aMCI with T2DM and NC with T2DM, the highest classification accuracy of 96%, 95%, 95% could be achieved respectively in the combination of three frequency bands (Alpha1, Alpha2, Gamma), (Beta1, Beta2 and Gamma) and (Alpha2, Beta1, Beta2). This WPCMI method highlighted the coupling dynamic characteristics of EEG signals, and its classification performance was better than all previous methods in aMCI with T2DM diagnosis field. WPCMI method could be used as an effective biomarker to distinguish EEG signals of aMCI with T2DM and NC with T2DM. The coupling feature extraction method used in this paper provided a new perspective for the EEG analysis of aMCI with T2DM.

The Significance of EEG Alpha Oscillation Spectral Power and Beta Oscillation Phase Synchronization for Diagnosing Probable Alzheimer Disease

Alzheimer disease (AD) is the most common cause of dementia in geriatric population. At present, no effective treatments exist to reverse the progress of AD, however, early diagnosis and intervention might delay its progression. The search for biomarkers with good safety, repeatable detection, reliable sensitivity and community application is necessary for AD screening and early diagnosis and timely intervention. Electroencephalogram (EEG) examination is a non-invasive, quantitative, reproducible, and cost-effective technique which is suitable for screening large population for possible AD. The power spectrum, complexity and synchronization characteristics of EEG waveforms in AD patients have distinct deviation from normal elderly, indicating these EEG features can be a promising candidate biomarker of AD. However, current reported deviation results are inconsistent, possibly due to multiple factors such as diagnostic criteria, sample sizes and the use of different computational measures. In this study, we collected two neurological tests scores (MMSE and MoCA) and the resting-state EEG of 30 normal control elderly subjects (NC group) and 30 probable AD patients confirmed by Pittsburgh compound B positron emission tomography (PiB-PET) inspection (AD group). We calculated the power spectrum, spectral entropy and phase synchronization index features of these two groups’ EEG at left/right frontal, temporal, central and occipital brain regions in 4 frequency bands: δ oscillation (1–4 Hz), θ oscillation (4–8 Hz), α oscillation (8–13 Hz), and β oscillation (13–30 Hz). In most brain areas, we found that the AD group had significant differences compared to NC group: (1) decreased α oscillation power and increased θ oscillation power; (2) decreased spectral entropy in α oscillation and elevated spectral entropy in β oscillation; and (3) decrease phase synchronization index in δ, θ, and β oscillation. We also found that α oscillation spectral power and β oscillation phase synchronization index correlated well with the MMSE/MoCA test scores in AD groups. Our study suggests that these two EEG features might be useful metrics for population screening of probable AD patients.

Refined Composite Multi-Scale Reverse Weighted Permutation Entropy and Its Applications in Ship-Radiated Noise

Ship-radiated noise is one of the important signal types under the complex ocean background, which can well reflect physical properties of ships. As one of the valid measures to characterize the complexity of ship-radiated noise, permutation entropy (PE) has the advantages of high efficiency and simple calculation. However, PE has the problems of missing amplitude information and single scale. To address the two drawbacks, refined composite multi-scale reverse weighted PE (RCMRWPE), as a novel measurement technology of describing the signal complexity, is put forward based on refined composite multi-scale processing (RCMP) and reverse weighted PE (RWPE). RCMP is an improved method of coarse-graining, which not only solves the problem of single scale, but also improves the stability of traditional coarse-graining; RWPE has been proposed more recently, and has better inter-class separability and robustness performance to noise than PE, weighted PE (WPE), and reverse PE (RPE). Additionally, a feature extraction scheme of ship-radiated noise is proposed based on RCMRWPE, furthermore, RCMRWPE is combined with discriminant analysis classifier (DAC) to form a new classification method. After that, a large number of comparative experiments of feature extraction schemes and classification methods with two artificial random signals and six ship-radiated noise are carried out, which show that the proposed feature extraction scheme has better performance in distinguishing ability and stability than the other three similar feature extraction schemes based on multi-scale PE (MPE), multi-scale WPE (MWPE), and multi-scale RPE (MRPE), and the proposed classification method also has the highest recognition rate.

Machine Learning Algorithms and Statistical Approaches for Alzheimer's Disease Analysis Based on Resting-State EEG Recordings: A Systematic Review

Alzheimer's Disease (AD) is a neurodegenerative disorder and the most common type of dementia with a great prevalence in western countries. The diagnosis of AD and its progression is performed through a variety of clinical procedures including neuropsychological and physical examination, Electroencephalographic (EEG) recording, brain imaging and blood analysis. During the last decades, analysis of the electrophysiological dynamics in AD patients has gained great research interest, as an alternative and cost-effective approach. This paper summarizes recent publications focusing on (a) AD detection and (b) the correlation of quantitative EEG features with AD progression, as it is estimated by Mini Mental State Examination (MMSE) score. A total of 49 experimental studies published from 2009 until 2020, which apply machine learning algorithms on resting state EEG recordings from AD patients, are reviewed. Results of each experimental study are presented and compared. The majority of the studies focus on AD detection incorporating Support Vector Machines, while deep learning techniques have not yet been applied on large EEG datasets. Promising conclusions for future studies are presented.

Novel channel selection method based on position priori weighted permutation entropy and binary gravity search algorithm

Brain-computer interface (BCI) system based on motor imagery (MI) usually adopts multichannel Electroencephalograph (EEG) signal recording method. However, EEG signals recorded in multi-channel mode usually contain many redundant and artifact information. Therefore, selecting a few effective channels from whole channels may be a means to improve the performance of MI-based BCI systems. We proposed a channel evaluation parameter called position priori weight-permutation entropy (PPWPE), which include amplitude information and position information of a channel. According to the order of PPWPE values, we initially selected half of the channels with large PPWPE value from all sampling electrode channels. Then, the binary gravitational search algorithm (BGSA) was used in searching a channel combination that will be used in determining an optimal channel combination. The features were extracted by common spatial pattern (CSP) method from the final selected channels, and the classifier was trained by support vector machine. The PPWPE + BGSA + CSP channel selection method is validated on two data sets. Results showed that the PPWPE + BGSA + CSP method obtained better mean classification accuracy (88.0% vs. 57.5% for Data set 1 and 91.1% vs. 79.4% for Data set 2) than All-C + CSP method. The PPWPE + BGSA + CSP method can achieve higher classification in fewer channels selected. This method has great potential to improve the performance of MI-based BCI systems.

A New Feature Extraction Method Based on Improved Variational Mode Decomposition, Normalized Maximal Information Coefficient and Permutation Entropy for Ship-Radiated Noise

Due to the existence of marine environmental noise, coupled with the instability of underwater acoustic channel, ship-radiated noise (SRN) signals detected by sensors tend to suffer noise pollution as well as distortion caused by the transmission medium, making the denoising of the raw detected signals the new focus in the field of underwater acoustic target recognition. In view of this, this paper presents a novel hybrid feature extraction scheme integrating improved variational mode decomposition (IVMD), normalized maximal information coefficient (norMIC) and permutation entropy (PE) for SRN signals. Firstly, the IVMD method is employed to decompose the SRN signals into a number of finite intrinsic mode functions (IMFs). The noise IMFs are then filtered out by a denoising method before PE extraction. Next, the MIC between each retained IMF and the raw SRN signal and PE of retained IMFs are calculated, respectively. After this, the norMICs are used to weigh the PE values of the retained IMFs and the sum of the weighted PE results is regarded as the classification parameter. Finally, the feature vectors are fed into the particle swarm optimization-based support vector machine multi-class classifier (PSO-SVM) to identify different types of SRN samples. The experimental results have indicated that the classification accuracy of the proposed method is as high as 99.1667%, which is much higher than that of other currently existing methods. Hence, the method proposed in this paper is more suitable for feature extraction of SRN signals in practical application.

A Novel Microwave Treatment for Sleep Disorders and Classification of Sleep Stages Using Multi-Scale Entropy

The aim of this study was to develop an integrated system of non-contact sleep stage detection and sleep disorder treatment for health monitoring. Hence, a method of brain activity detection based on microwave scattering technology instead of scalp electroencephalogram was developed to evaluate the sleep stage. First, microwaves at a specific frequency were used to penetrate the functional sites of the brain in patients with sleep disorders to change the firing frequency of the activated areas of the brain and analyze and evaluate statistically the effects on sleep improvement. Then, a wavelet packet algorithm was used to decompose the microwave transmission signal, the refined composite multiscale sample entropy, the refined composite multiscale fluctuation-based dispersion entropy and multivariate multiscale weighted permutation entropy were obtained as features from the wavelet packet coefficient. Finally, the mutual information-principal component analysis feature selection method was used to optimize the feature set and random forest was used to classify and evaluate the sleep stage. The results show that after four times of microwave modulation treatment, sleep efficiency improved continuously, the overall maintenance was above 80%, and the insomnia rate was reduced gradually. The overall classification accuracy of the four sleep stages was 86.4%. The results indicate that the microwaves with a certain frequency can treat sleep disorders and detect abnormal brain activity. Therefore, the microwave scattering method is of great significance in the development of a new brain disease treatment, diagnosis and clinical application system.

Complexity Analysis of EEG, MEG, and fMRI in Mild Cognitive Impairment and Alzheimer's Disease: A Review

Alzheimer's disease (AD) is a degenerative brain disease with a high and irreversible incidence. In recent years, because brain signals have complex nonlinear dynamics, there has been growing interest in studying complex changes in the time series of brain signals in patients with AD. We reviewed studies of complexity analyses of single-channel time series from electroencephalogram (EEG), magnetoencephalogram (MEG), and functional magnetic resonance imaging (fMRI) in AD and determined future research directions. A systematic literature search for 2000-2019 was performed in the Web of Science and PubMed databases, resulting in 126 identified studies. Compared to healthy individuals, the signals from AD patients have less complexity and more predictable oscillations, which are found mainly in the left parietal, occipital, right frontal, and temporal regions. This complexity is considered a potential biomarker for accurately responding to the functional lesion in AD. The current review helps to reveal the patterns of dysfunction in the brains of patients with AD and to investigate whether signal complexity can be used as a biomarker to accurately respond to the functional lesion in AD. We proposed further studies in the signal complexities of AD patients, including investigating the reliability of complexity algorithms and the spatial patterns of signal complexity. In conclusion, the current review helps to better understand the complexity of abnormalities in the AD brain and provide useful information for AD diagnosis.

A Between-Subject fNIRS-BCI Study on Detecting Self-Regulated Intention During Walking

OBJECTIVE

Most BCI (brain-computer interface) studies have focused on detecting motion intention from a resting state. However, the dynamic regulation of two motion states, which usually happens in real life, is rarely studied. Besides, popular within-subject methods also require an extensive and time-consuming learning stage when testing on a new subject. This paper proposed a method to discriminate dynamic gait- adjustment intention with strong adaptability for different subjects.

METHODS

Cerebral hemoglobin signals obtained from 30 subjects were studied to decode gait-adjustment intention. Cerebral hemoglobin information was recorded by using fNIRS (functional near infrared spectroscopy) technology. Mathematical morphology filtering was applied to remove zero drift and EWM (Entropy Weight Method) was used to calculate the average hemoglobin values over Regions of Interest (ROIs). The gradient boosting decision tree (GBDT) was utilized to detect the onset of self-regulated intention. A 2-layer-GA-SVM (Genetic Algorithm-Support Vector Machine) model based on stacking algorithm was further proposed to identify the four types of self-regulated intention (speed increase, speed reduction, step increase, and step reduction).

RESULTS

It was found that GBDT had a good performance to detect the onset intention with an average AUC (Area Under Curve) of 0.894. The 2-layer-GA-SVM model boosted the average ACC (accuracy) of four types of intention from 70.6% to 84.4% ( p = 0.005 ) from the single GA-SVM model. Furthermore, the proposed method passed pseudo-online test with the average results as following: AUC = 0.883, TPR (True Positive Rate) = 97.5%, FPR (False Positive Rate) = 0.11%, and LAY (Detection Latency) = -0.52 ± 2.57 seconds for the recognition of gait-adjustment intention; ACC = 80% for the recognition of adjusted gait.

CONCLUSION

The results indicate that it is feasible to decode dynamic gait-adjustment intentions from a motion state for different subjects based on fNIRS technology. It has a potential to realize the practical application of fNIRS-based brain-computer interface technology in controlling walking-assistive devices.

Permutation Entropy and Bubble Entropy: Possible interactions and synergies between order and sorting relations

Despite its widely demonstrated usefulness, there is still room for improvement in the basic Permutation Entropy (PE) algorithm, as several subsequent studies have proposed in the recent years. For example, some improved PE variants try to address possible PE weaknesses, such as its only focus on ordinal information, and not on amplitude, or the possible detrimental impact of equal values in subsequences due to motif ambiguity. Other evolved PE methods try to reduce the influence of input parameters. A good representative of this last point is the Bubble Entropy (BE) method. BE is based on sorting relations instead of ordinal patterns, and its promising capabilities have not been extensively assessed yet. The objective of the present study was to comparatively assess the classification performance of this new method, and study and exploit the possible synergies between PE and BE. The claimed superior performance of BE over PE was first evaluated by conducting a series of time series classification tests over a varied and diverse experimental set. The results of this assessment apparently suggested that there is a complementary relationship between PE and BE, instead of a superior/inferior relationship. A second set of experiments using PE and BE simultaneously as the input features of a clustering algorithm, demonstrated that with a proper algorithm configuration, classification accuracy and robustness can benefit from both measures.

Slope Entropy: A New Time Series Complexity Estimator Based on Both Symbolic Patterns and Amplitude Information

The development of new measures and algorithms to quantify the entropy or related concepts of a data series is a continuous effort that has brought many innovations in this regard in recent years. The ultimate goal is usually to find new methods with a higher discriminating power, more efficient, more robust to noise and artifacts, less dependent on parameters or configurations, or any other possibly desirable feature. Among all these methods, Permutation Entropy (PE) is a complexity estimator for a time series that stands out due to its many strengths, with very few weaknesses. One of these weaknesses is the PE’s disregarding of time series amplitude information. Some PE algorithm modifications have been proposed in order to introduce such information into the calculations. We propose in this paper a new method, Slope Entropy (SlopEn), that also addresses this flaw but in a different way, keeping the symbolic representation of subsequences using a novel encoding method based on the slope generated by two consecutive data samples. By means of a thorough and extensive set of comparative experiments with PE and Sample Entropy (SampEn), we demonstrate that SlopEn is a very promising method with clearly a better time series classification performance than those previous methods.

Inhaling Hydrogen Ameliorates Early Postresuscitation EEG Characteristics in an Asphyxial Cardiac Arrest Rat Model

Background

Electroencephalography (EEG) is commonly used to assess the neurological prognosis of comatose patients after cardiac arrest (CA). However, the early prognostic accuracy of EEG may be affected by postresuscitation interventions. Recent animal studies found that hydrogen inhalation after CA greatly improved neurological outcomes by selectively neutralizing highly reactive oxidants, but the effect of hydrogen inhalation on EEG recovery and its prognostication value are still unclear. The present study investigated the effects of hydrogen inhalation on early postresuscitation EEG characteristics in an asphyxial CA rat model.

Methods

Cardiopulmonary resuscitation was initiated after 5 min of untreated CA in 40 adult female Sprague-Dawley rats. Animals were randomized for ventilation with 98% oxygen plus 2% hydrogen (H2) or 98% oxygen plus 2% nitrogen (Ctrl) under normothermia for 1 h. EEG characteristics were continuously recorded for 4 h, and the relationships between quantitative EEG characteristics and 96 h neurological outcomes were investigated.

Results

No differences in baseline and resuscitation data were observed between groups, but the survival rate was significantly higher in the H2 group than in the Ctrl group (90% vs. 40%, P < 0.01). Compared to the Ctrl group, the H2 group showed a shorter burst onset time (21.85 [20.00-23.38] vs. 25.70 [22.48-30.05], P < 0.01) and time to normal trace (169.83 [161.63-208.55] vs. 208.39 [186.29-248.80], P < 0.01). Additionally, the burst suppression ratio (0.66 ± 0.09 vs. 0.52 ± 0.17, P < 0.01) and weighted-permutation entropy (0.47 ± 0.16 vs. 0.34 ± 0.13, P < 0.01) were markedly higher in the H2 group. The areas under the receiver operating characteristic curves for the 4 EEG characteristics in predicting survival were 0.82, 0.84, 0.88, and 0.83, respectively.

Conclusions

In this asphyxial CA rat model, the improved postresuscitation EEG characteristics for animals treated with hydrogen are correlated with the better 96 h neurological outcome and predicted survival.

Complex temporal patterns processing by a neural mass model of a cortical column

It is well known that neuronal networks are capable of transmitting complex spatiotemporal information in the form of precise sequences of neuronal discharges characterized by recurrent patterns. At the same time, the synchronized activity of large ensembles produces local field potentials that propagate through highly dynamic oscillatory waves, such that, at the whole brain scale, complex spatiotemporal dynamics of electroencephalographic (EEG) signals may be associated to sensorimotor decision making processes. Despite these experimental evidences, the link between highly temporally organized input patterns and EEG waves has not been studied in detail. Here, we use a neural mass model to investigate to what extent precise temporal information, carried by deterministic nonlinear attractor mappings, is filtered and transformed into fluctuations in phase, frequency and amplitude of oscillatory brain activity. The phase shift that we observe, when we drive the neural mass model with specific chaotic inputs, shows that the local field potential amplitude peak appears in less than one full cycle, thus allowing traveling waves to encode temporal information. After converting phase and amplitude changes obtained into point processes, we quantify input-output similarity following a threshold-filtering algorithm onto the amplitude wave peaks. Our analysis shows that the neural mass model has the capacity for gating the input signal and propagate selected temporal features of that signal. Finally, we discuss the effect of local excitatory/inhibitory balance on these results and how excitability in cortical columns, controlled by neuromodulatory innervation of the cerebral cortex, may contribute to set a fine tuning and gating of the information fed to the cortex.

The ClassA Framework: HRV Based Assessment of SNS and PNS Dynamics Without LF-HF Controversies

The powers of the low frequency (LF) and high frequency (HF) components of heart rate variability (HRV) have become the de facto standard metrics in the assessment of the stress response, and the related activities of the sympathetic nervous system (SNS) and the parasympathetic nervous system (PNS). However, the widely adopted physiological interpretations of the LF and HF components in SNS /PNS balance are now questioned, which puts under serious scrutiny stress assessments which employ the LF and HF components. To avoid these controversies, we here introduce the novel Classification Angle (ClassA) framework, which yields a family of metrics which quantify cardiac dynamics in three-dimensions. This is achieved using a finite-difference plot of HRV, which displays successive rates of change of HRV, and is demonstrated to provide sufficient degrees of freedom to determine cardiac deceleration and/or acceleration. The robustness and accuracy of the novel ClassA framework is verified using HRV signals from ten males, recorded during standardized stress tests, consisting of rest, mental arithmetic, meditation, exercise and further meditation. Comparative statistical testing demonstrates that unlike the existing LF-HF metrics, the ClassA metrics are capable of distinguishing both the physical and mental stress epochs from the epochs of no stress, with statistical significance (Bonferroni corrected p-value ≤ 0.025); HF was able to distinguish physical stress from no stress, but was not able to identify mental stress. The ClassA results also indicated that at moderate levels of stress, the extent of parasympathetic withdrawal was greater than the extent of sympathetic activation. Finally, the analyses and the experimental results provide conclusive evidence that the proposed nonlinear approach to quantify cardiac activity from HRV resolves three critical obstacles to current HRV stress assessments: (i) it is not based on controversial assumptions of balance between the LF and HF powers; (ii) its temporal resolution when estimating parasympathetic dominance is as little as 10 s of HRV data, while only 60 s to estimate sympathetic dominance; (iii) unlike LF and HF analyses, the ClassA framework does not require the prohibitive assumption of signal stationarity. The ClassA framework is unique in offering HRV based stress analysis in three-dimensions.

EEG Window Length Evaluation for the Detection of Alzheimer's Disease over Different Brain Regions

Alzheimer's Disease (AD) is a neurogenerative disorder and the most common type of dementia with a rapidly increasing world prevalence. In this paper, the ability of several statistical and spectral features to detect AD from electroencephalographic (EEG) recordings is evaluated. For this purpose, clinical EEG recordings from 14 patients with AD (8 with mild AD and 6 with moderate AD) and 10 healthy, age-matched individuals are analyzed. The EEG signals are initially segmented in nonoverlapping epochs of different lengths ranging from 5 s to 12 s. Then, a group of statistical and spectral features calculated for each EEG rhythm (δ, θ, α, β, and γ) are extracted, forming the feature vector that trained and tested a Random Forests classifier. Six classification problems are addressed, including the discrimination from whole-brain dynamics and separately from specific brain regions in order to highlight any alterations of the cortical regions. The results indicated a high accuracy ranging from 88.79% to 96.78% for whole-brain classification. Also, the classification accuracy was higher at the posterior and central regions than at the frontal area and the right side of temporal lobe for all classification problems.

Combining early post-resuscitation EEG and HRV features improves the prognostic performance in cardiac arrest model of rats

OBJECTIVE

Early and reliable prediction of neurological outcome remains a challenge for comatose survivors of cardiac arrest (CA). The purpose of this study was to evaluate the predictive ability of EEG, heart rate variability (HRV) features and the combination of them for outcome prognostication in CA model of rats.

METHODS

Forty-eight male Sprague-Dawley rats were randomized into 6 groups (n=8 each) with different cause and duration of untreated arrest. Cardiopulmonary resuscitation was initiated after 5, 6 and 7min of ventricular fibrillation or 4, 6 and 8min of asphyxia. EEG and ECG were continuously recorded for 4h under normothermia after resuscitation. The relationships between features of early post-resuscitation EEG, HRV and 96-hour outcome were investigated. Prognostic performances were evaluated using the area under receiver operating characteristic curve (AUC).

RESULTS

All of the animals were successfully resuscitated and 27 of them survived to 96h. Weighted-permutation entropy (WPE) and normalized high frequency (nHF) outperformed other EEG and HRV features for the prediction of survival. The AUC of WPE was markedly higher than that of nHF (0.892 vs. 0.759, p<0.001). The AUC was 0.954 when WPE and nHF were combined using a logistic regression model, which was significantly higher than the individual EEG (p=0.018) and HRV (p<0.001) features.

CONCLUSIONS

Earlier post-resuscitation HRV provided prognostic information complementary to quantitative EEG in the CA model of rats. The combination of EEG and HRV features leads to improving performance of outcome prognostication compared to either EEG or HRV based features alone.

Analysis of long range dependence in the EEG signals of Alzheimer patients

Alzheimer's disease (AD), a cognitive disability is analysed using a long range dependence parameter, hurst exponent (HE), calculated based on the time domain analysis of the measured electrical activity of brain. The electroencephalogram (EEG) signals of controls and mild cognitive impairment (MCI)-AD patients are evaluated under normal resting and mental arithmetic conditions. Simultaneous low pass filtering and total variation denoising algorithm is employed for preprocessing. Larger values of HE observed in the right hemisphere of the brain for AD patients indicated a decrease in irregularity of the EEG signal under cognitive task conditions. Correlations between HE and the neuropsychological indices are analysed using bivariate correlation analysis. The observed reduction in the values of Auto mutual information and cross mutual information in the local antero-frontal and distant regions in the brain hemisphere indicates the loss of information transmission in MCI-AD patients.

Analysis of long range dependence in the EEG signals of Alzheimer patients

Alzheimer's disease (AD), a cognitive disability is analysed using a long range dependence parameter, hurst exponent (HE), calculated based on the time domain analysis of the measured electrical activity of brain. The electroencephalogram (EEG) signals of controls and mild cognitive impairment (MCI)-AD patients are evaluated under normal resting and mental arithmetic conditions. Simultaneous low pass filtering and total variation denoising algorithm is employed for preprocessing. Larger values of HE observed in the right hemisphere of the brain for AD patients indicated a decrease in irregularity of the EEG signal under cognitive task conditions. Correlations between HE and the neuropsychological indices are analysed using bivariate correlation analysis. The observed reduction in the values of Auto mutual information and cross mutual information in the local antero-frontal and distant regions in the brain hemisphere indicates the loss of information transmission in MCI-AD patients.

A Comparison of Lysosomal Enzymes Expression Levels in Peripheral Blood of Mild- and Severe-Alzheimer's Disease and MCI Patients: Implications for Regenerative Medicine Approaches

The association of lysosomal dysfunction and neurodegeneration has been documented in several neurodegenerative diseases, including Alzheimer's Disease (AD). Herein, we investigate the association of lysosomal enzymes with AD at different stages of progression of the disease (mild and severe) or with mild cognitive impairment (MCI). We conducted a screening of two classes of lysosomal enzymes: glycohydrolases (β-Hexosaminidase, β-Galctosidase, β-Galactosylcerebrosidase, β-Glucuronidase) and proteases (Cathepsins S, D, B, L) in peripheral blood samples (blood plasma and PBMCs) from mild AD, severe AD, MCI and healthy control subjects. We confirmed the lysosomal dysfunction in severe AD patients and added new findings enhancing the association of abnormal levels of specific lysosomal enzymes with the mild AD or severe AD, and highlighting the difference of AD from MCI. Herein, we showed for the first time the specific alteration of β-Galctosidase (Gal), β-Galactosylcerebrosidase (GALC) in MCI patients. It is notable that in above peripheral biological samples the lysosomes are more sensitive to AD cellular metabolic alteration when compared to levels of Aβ-peptide or Tau proteins, similar in both AD groups analyzed. Collectively, our findings support the role of lysosomal enzymes as potential peripheral molecules that vary with the progression of AD, and make them useful for monitoring regenerative medicine approaches for AD.