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Kaya G, Noma SAA, Barut Celepci D, Bayıl İ, Taskin-Tok T, Gök Y, Ateş B, Aktaş A, Aygün M, Tezcan B. Design, synthesis, spectroscopic characterizations, single crystal X-ray analysis, in vitro xanthine oxidase and acetylcholinesterase inhibitory evaluation as well as in silico evaluation of selenium-based N-heterocyclic carbene compounds. J Biomol Struct Dyn 2023; 41:11728-11747. [PMID: 36622368 DOI: 10.1080/07391102.2022.2163696] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2022] [Accepted: 12/22/2022] [Indexed: 01/10/2023]
Abstract
Herein, eight new NHC-based selenourea derivatives were synthesized and characterized by using spectroscopic method (1H, 19F, and 13C NMR, FT-IR), and elemental analysis techniques. These compounds were synthesized by mixing benzimidazolium salts, potassium carbonate, and selenium powder in ethyl alcohol. Additionally, the molecular and crystal structures of the three compounds (1c, 2b, and 2c) were determined using the single-crystal x-ray diffraction (XRD) method. Diffraction analysis demonstrated the partial carbon-selenium double-bond character of these compounds. All compounds were determined to be highly potent inhibitors for AChE and XO enzymes. The IC50 values for the compounds were found in the range of 0.361-0.754 μM for XO and from 0.995 to 1.746 μM for AChE. The DNA binding properties of the compounds were investigated. These compounds did not have a remarkable DNA binding property. Also, DPPH radical scavenging activities of the compounds were also investigated. Compounds (1c), (2a), (3a), and (3b) exhibited more pronounced DPPH radical scavenging activity when compared to other compounds. Docking studies were applied by using AutoDock 4 to determine interaction mechanism of the selected compounds (1a), (1b), and (3b). The compound (1b) has good binding affinity (-9.78 kcal/mol) against AChE, and (-6.86 kcal/mol) for XO target. Drug similarity properties of these compounds compared to positive controls were estimated and evaluated by ADMET analysis. Furthermore, molecular dynamics simulations have been applied to understand the accuracy of docking studies. These findings and the defined compounds could be potential candidates for the discovery and progress of effective medicine(s) for AChE and XO in the future.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Gülşen Kaya
- Department of Chemistry, Faculty of Arts and Science, Inonu University, Malatya, Türkiye
| | - Samir Abbas Ali Noma
- Department of Chemistry, Faculty of Arts and Science, Inonu University, Malatya, Türkiye
- Department of Chemistry, Faculty of Arts and Science, Bursa Uludag University, Bursa, Türkiye
| | - Duygu Barut Celepci
- Faculty of Science, Department of Physics, Dokuz Eylül University, Buca, İzmir, Türkiye
| | - İmren Bayıl
- Department of Bioinformatics and Computational Biology, Institute of Health Sciences, Gaziantep University, Gaziantep, Türkiye
| | - Tugba Taskin-Tok
- Department of Chemistry, Faculty of Arts and Sciences, Gaziantep University, Gaziantep, Türkiye
- Department of Bioinformatics and Computational Biology, Institute of Health Sciences, Gaziantep University, Gaziantep, Türkiye
| | - Yetkin Gök
- Department of Chemistry, Faculty of Arts and Science, Inonu University, Malatya, Türkiye
| | - Burhan Ateş
- Department of Chemistry, Faculty of Arts and Science, Inonu University, Malatya, Türkiye
| | - Aydın Aktaş
- Vocational School of Health Service, Inonu University, Malatya, Türkiye
| | - Muhittin Aygün
- Faculty of Science, Department of Physics, Dokuz Eylül University, Buca, İzmir, Türkiye
| | - Burcu Tezcan
- Department of Chemistry, Faculty of Arts and Science, Cukurova University, Adana, Türkiye
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2
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Aktaş A, Yakalı G, Demir Y, Gülçin İ, Aygün M, Gök Y. The palladium-based complexes bearing 1,3-dibenzylbenzimidazolium with morpholine, triphenylphosphine, and pyridine derivate ligands: synthesis, characterization, structure and enzyme inhibitions. Heliyon 2022; 8:e10625. [PMID: 36185151 PMCID: PMC9520214 DOI: 10.1016/j.heliyon.2022.e10625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/17/2022] [Accepted: 09/08/2022] [Indexed: 11/19/2022] Open
Abstract
The palladium-based complexes bearing N-heterocyclic carbene (NHC) ligand have long attracted attention as active catalysts for many catalytic reactions. Recently, the biological activities of these complexes, which are stable to air and moisture, have also been wondered. With the aim, we report the synthesis of a series of (NHC)Pd(Br2)(L) complexes (NHC: 1,3-dibenzylbenzimidazolium, L: morpholine, triphenylphosphine, pyridine, 3-chloropyridine, and 2-aminopyridine). All complexes were characterized by NMR (1H and 13C), FTIR spectroscopic and elemental analysis techniques. In addition, the single crystal structures of the complex 3, 4, and 6 were determined through single crystal x-ray crystallographic method. Furthermore, the carbonic anhydrase I and II isoenzymes (hCAs) and acetylcholinesterase (AChE) inhibition effects of these palladium-based complexes bearing NHC ligand were investigated. They showed highly potent inhibition effect with Ki values are between 10.06 ± 1.49–68.56 ± 11.53 nM for hCA I isoenzyme, 7.74 ± 0.66 to 49.39 ± 6.50 nM for hCA II isoenzyme and 22.83 ± 3.21 to 64.09 ± 9.05 nM for AChE enzyme.
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Affiliation(s)
- Aydın Aktaş
- Inonu University, Vocational School of Health Service, 44280, Malatya, Turkey
| | - Gül Yakalı
- Department of Engineering Sciences, Faculty of Engineering, Izmir Katip Celebi University, 35620, Izmir, Turkey
| | - Yeliz Demir
- Department of Pharmacy Services, Nihat Delibalta Göle Vocational High School, Ardahan University, 75000, Ardahan, Turkey
| | - İlhami Gülçin
- Atatürk University, Faculty of Science, Department of Chemistry, 25240, Erzurum, Turkey
- Corresponding author.
| | - Muhittin Aygün
- Department of Physics, Faculty of Arts and Sciences, Dokuz Eylül University, 35150, Izmir, Turkey
| | - Yetkin Gök
- Department of Chemistry, Faculty of Science and Arts, Inonu University, 44280, Malatya, Turkey
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Hamdi N, Slimani I, Mansour L, Alresheedi F, Özdemir I, Gürbüz N. Rhodium(I) complexes with N-heterocyclic carbene ligands: synthesis, biological properties and catalytic activity in the hydrosilylation of aromatic ketones. J COORD CHEM 2021. [DOI: 10.1080/00958972.2021.1992400] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Naceur Hamdi
- Department of Chemistry, College of Sciences and Arts at Ar Rass, Qassim University, Ar Rass, Saudi Arabia
- Research Laboratory of Environmental Sciences and Technologies (LR16ES09), Higher Institute of Environmental Sciences and Technology, University of Carthage, Amilcar, Tunisia
| | - Ichraf Slimani
- Research Laboratory of Environmental Sciences and Technologies (LR16ES09), Higher Institute of Environmental Sciences and Technology, University of Carthage, Amilcar, Tunisia
| | - Lamjed Mansour
- Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Faisal Alresheedi
- Department of Physics, College of Science, Qassim University, Buraidah, Saudi Arabia
| | - Ismail Özdemir
- Catalysis Research and Application Center, İnönü University, Malatya, Turkey
- Faculty of Science and Art, Department of Chemistry, İnönü University, Malatya, Turkey
| | - Nevin Gürbüz
- Catalysis Research and Application Center, İnönü University, Malatya, Turkey
- Faculty of Science and Art, Department of Chemistry, İnönü University, Malatya, Turkey
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Daşgın S, Gök Y, Barut Celepci D, Taslimi P, İzmirli M, Aktaş A, Gülçin İ. Synthesis, characterization, crystal structure and bioactivity properties of the benzimidazole-functionalized PEPPSI type of Pd(II)NHC complexes. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129442] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
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Synthesis, characterization and bioactivities of dative donor ligand N-heterocyclic carbene (NHC) precursors and their Ag(I)NHC coordination compounds. Polyhedron 2021. [DOI: 10.1016/j.poly.2020.114866] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Behçet A, Aktaş A, Gök Y, Kaya R, Taslimi P, Gülçin İ. Novel silver(I)
N
‐heterocyclic
carbene complexes bearing 2‐(4‐hydroxyphenyl)ethyl group: Synthesis, characterization, and enzyme inhibition properties. J Heterocycl Chem 2020. [DOI: 10.1002/jhet.4199] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Ayten Behçet
- Department of Chemistry, Faculty of Arts and Sciences Inönü University Malatya Turkey
| | - Aydın Aktaş
- Department of Chemistry, Faculty of Arts and Sciences Inönü University Malatya Turkey
- Vocational School of Health Service Inonu University Malatya Turkey
| | - Yetkin Gök
- Department of Chemistry, Faculty of Arts and Sciences Inönü University Malatya Turkey
| | - Rüya Kaya
- Central Research and Application Laboratory Ağri İbrahim Çeçen University Agri Turkey
- Department of Chemistry, Faculty of Sciences Atatürk University Erzurum Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science Bartin University Bartin Turkey
| | - İlhami Gülçin
- Department of Chemistry, Faculty of Sciences Atatürk University Erzurum Turkey
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Türker F, Noma SAA, Aktaş A, Al-Khafaji K, Taşkın Tok T, Ateş B, Gök Y. The (NHC)PdBr2(2-aminopyridine) complexes: synthesis, characterization, molecular docking study, and inhibitor effects on the human serum carbonic anhydrase and serum bovine xanthine oxidase. MONATSHEFTE FUR CHEMIE 2020. [DOI: 10.1007/s00706-020-02687-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Sarkar B, Vougioukalakis GC, Tonis E, Stein F, Stamatopoulos IK, Stubbe J, Zarkadoulas A. A Palladium-Free Sonogashira Coupling Protocol Employing an In Situ Prepared Copper/Chelating 1,2,3-Triazolylidene System. Synlett 2020. [DOI: 10.1055/a-1290-8469] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
AbstractA new, palladium-free Sonogashira coupling reaction protocol using a catalytic system that comprises a simple, cheap, widely available copper salt and a chelating 1,2,3-triazolylidene ligand precursor is reported. This protocol provides the desired coupling products in moderate to very good yields.
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Affiliation(s)
- Biprajit Sarkar
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin
- Chair of Inorganic Coordination Chemistry, Institute of Inorganic Chemistry, University of Stuttgart
| | - Georgios C. Vougioukalakis
- Laboratory of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens
| | - Efstathios Tonis
- Laboratory of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens
| | - Felix Stein
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin
| | - Ioannis K. Stamatopoulos
- Laboratory of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens
| | - Jessica Stubbe
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin
| | - Athanasios Zarkadoulas
- Laboratory of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens
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Jiménez-Cruz JC, Guzmán-Mejía R, Juaristi E, Sánchez-Antonio O, García-Revilla MA, González-Campos JB, Aviña-Verduzco J. Preparation of aromatic γ-hydroxyketones by means of Heck coupling of aryl halides and 2,3-dihydrofuran, catalyzed by a palladium( ii) glycine complex under microwave irradiation. NEW J CHEM 2020. [DOI: 10.1039/d0nj02630a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The synthesis of phenyl-γ-hydroxyketones through Heck coupling and subsequent opening of the tetrahydrofuran ring by the nucleophilic attack of a water molecule catalyzed by PdCl2·Gly2 under microwave irradiation.
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Affiliation(s)
- Juan C. Jiménez-Cruz
- Instituto de Investigaciones Químico Biológicas
- Universidad Michoacana de San Nicolás de Hidalgo
- 58030 Morelia
- Mexico
| | - Ramón Guzmán-Mejía
- Instituto de Investigaciones Químico Biológicas
- Universidad Michoacana de San Nicolás de Hidalgo
- 58030 Morelia
- Mexico
| | - Eusebio Juaristi
- Departamento de Química
- Centro de Investigación y de Estudios Avanzados
- Avenida Instituto Politécnico
- 07360 Ciudad de México
- Mexico
| | - Omar Sánchez-Antonio
- Departamento de Química
- Centro de Investigación y de Estudios Avanzados
- Avenida Instituto Politécnico
- 07360 Ciudad de México
- Mexico
| | | | - J. Betzabe González-Campos
- Instituto de Investigaciones Químico Biológicas
- Universidad Michoacana de San Nicolás de Hidalgo
- 58030 Morelia
- Mexico
| | - Judit Aviña-Verduzco
- Instituto de Investigaciones Químico Biológicas
- Universidad Michoacana de San Nicolás de Hidalgo
- 58030 Morelia
- Mexico
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