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Odusami M, Maskeliūnas R, Damaševičius R, Misra S. Machine learning with multimodal neuroimaging data to classify stages of Alzheimer's disease: a systematic review and meta-analysis. Cogn Neurodyn 2024; 18:775-794. [PMID: 38826669 PMCID: PMC11143094 DOI: 10.1007/s11571-023-09993-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 06/23/2023] [Accepted: 07/17/2023] [Indexed: 06/04/2024] Open
Abstract
In recent years, Alzheimer's disease (AD) has been a serious threat to human health. Researchers and clinicians alike encounter a significant obstacle when trying to accurately identify and classify AD stages. Several studies have shown that multimodal neuroimaging input can assist in providing valuable insights into the structural and functional changes in the brain related to AD. Machine learning (ML) algorithms can accurately categorize AD phases by identifying patterns and linkages in multimodal neuroimaging data using powerful computational methods. This study aims to assess the contribution of ML methods to the accurate classification of the stages of AD using multimodal neuroimaging data. A systematic search is carried out in IEEE Xplore, Science Direct/Elsevier, ACM DigitalLibrary, and PubMed databases with forward snowballing performed on Google Scholar. The quantitative analysis used 47 studies. The explainable analysis was performed on the classification algorithm and fusion methods used in the selected studies. The pooled sensitivity and specificity, including diagnostic efficiency, were evaluated by conducting a meta-analysis based on a bivariate model with the hierarchical summary receiver operating characteristics (ROC) curve of multimodal neuroimaging data and ML methods in the classification of AD stages. Wilcoxon signed-rank test is further used to statistically compare the accuracy scores of the existing models. With a 95% confidence interval of 78.87-87.71%, the combined sensitivity for separating participants with mild cognitive impairment (MCI) from healthy control (NC) participants was 83.77%; for separating participants with AD from NC, it was 94.60% (90.76%, 96.89%); for separating participants with progressive MCI (pMCI) from stable MCI (sMCI), it was 80.41% (74.73%, 85.06%). With a 95% confidence interval (78.87%, 87.71%), the Pooled sensitivity for distinguishing mild cognitive impairment (MCI) from healthy control (NC) participants was 83.77%, with a 95% confidence interval (90.76%, 96.89%), the Pooled sensitivity for distinguishing AD from NC was 94.60%, likewise (MCI) from healthy control (NC) participants was 83.77% progressive MCI (pMCI) from stable MCI (sMCI) was 80.41% (74.73%, 85.06%), and early MCI (EMCI) from NC was 86.63% (82.43%, 89.95%). Pooled specificity for differentiating MCI from NC was 79.16% (70.97%, 87.71%), AD from NC was 93.49% (91.60%, 94.90%), pMCI from sMCI was 81.44% (76.32%, 85.66%), and EMCI from NC was 85.68% (81.62%, 88.96%). The Wilcoxon signed rank test showed a low P-value across all the classification tasks. Multimodal neuroimaging data with ML is a promising future in classifying the stages of AD but more research is required to increase the validity of its application in clinical practice.
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Affiliation(s)
- Modupe Odusami
- Department of Multimedia Engineering, Kaunas University of Technology, Kaunas, Lithuania
| | - Rytis Maskeliūnas
- Department of Multimedia Engineering, Kaunas University of Technology, Kaunas, Lithuania
| | | | - Sanjay Misra
- Department of Applied Data Science, Institute for Energy Technology, Halden, Norway
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Hafiz R, Saeed S. Hybrid whale algorithm with evolutionary strategies and filtering for high-dimensional optimization: Application to microarray cancer data. PLoS One 2024; 19:e0295643. [PMID: 38466740 PMCID: PMC10927076 DOI: 10.1371/journal.pone.0295643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 11/28/2023] [Indexed: 03/13/2024] Open
Abstract
The standard whale algorithm is prone to suboptimal results and inefficiencies in high-dimensional search spaces. Therefore, examining the whale optimization algorithm components is critical. The computer-generated initial populations often exhibit an uneven distribution in the solution space, leading to low diversity. We propose a fusion of this algorithm with a discrete recombinant evolutionary strategy to enhance initialization diversity. We conduct simulation experiments and compare the proposed algorithm with the original WOA on thirteen benchmark test functions. Simulation experiments on unimodal or multimodal benchmarks verified the better performance of the proposed RESHWOA, such as accuracy, minimum mean, and low standard deviation rate. Furthermore, we performed two data reduction techniques, Bhattacharya distance and signal-to-noise ratio. Support Vector Machine (SVM) excels in dealing with high-dimensional datasets and numerical features. When users optimize the parameters, they can significantly improve the SVM's performance, even though it already works well with its default settings. We applied RESHWOA and WOA methods on six microarray cancer datasets to optimize the SVM parameters. The exhaustive examination and detailed results demonstrate that the new structure has addressed WOA's main shortcomings. We conclude that the proposed RESHWOA performed significantly better than the WOA.
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Affiliation(s)
- Rahila Hafiz
- College of Statistical Sciences, University of the Punjab, Lahore, Pakistan
| | - Sana Saeed
- College of Statistical Sciences, University of the Punjab, Lahore, Pakistan
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Khan S, Alzaabi A, Ratnarajah T, Arslan T. Novel statistical time series data augmentation and machine learning based classification of unobtrusive respiration data for respiration Digital Twin model. Comput Biol Med 2024; 168:107825. [PMID: 38061156 DOI: 10.1016/j.compbiomed.2023.107825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 11/29/2023] [Accepted: 12/04/2023] [Indexed: 01/10/2024]
Abstract
Digital Twin (DT), a concept of Healthcare (4.0), represents the subject's biological properties and characteristics in a digital model. DT can help in monitoring respiratory failures, enabling timely interventions, personalized treatment plans to improve healthcare, and decision-support for healthcare professionals. Large-scale implementation of DT technology requires extensive patient data for accurate monitoring and decision-making with Machine Learning (ML) and Deep Learning (DL). Initial respiration data was collected unobtrusively with the ESP32 Wi-Fi Channel State Information (CSI) sensor. Due to limited respiration data availability, the paper proposes a novel statistical time series data augmentation method for generating larger synthetic respiration data. To ensure accuracy and validity in the augmentation method, correlation methods (Pearson, Spearman, and Kendall) are implemented to provide a comparative analysis of experimental and synthetic datasets. Data processing methodologies of denoising (smoothing and filtering) and dimensionality reduction with Principal Component Analysis (PCA) are implemented to estimate a patient's Breaths Per Minute (BPM) from raw respiration sensor data and the synthetic version. The methodology provided the BPM estimation accuracy of 92.3% from raw respiration data. It was observed that out of 27 supervised classifications with k-fold cross-validation, the Bagged Tree ensemble algorithm provided the best ML-supervised classification. In the case of binary-class and multi-class, the Bagged Tree ensemble showed accuracies of 89.2% and 83.7% respectively with combined real and synthetic respiration dataset with the larger synthetic dataset. Overall, this provides a blueprint of methodologies for the development of the respiration DT model.
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Affiliation(s)
- Sagheer Khan
- School of Engineering, The University of Edinburgh, Edinburgh EH9 3FF, UK.
| | - Aaesha Alzaabi
- School of Engineering, The University of Edinburgh, Edinburgh EH9 3FF, UK
| | | | - Tughrul Arslan
- School of Engineering, The University of Edinburgh, Edinburgh EH9 3FF, UK; Advanced Care Research Centre (ACRC), The University of Edinburgh, Edinburgh, EH16 4UX, UK
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Jegan R, Jayagowri R. Voice pathology detection using optimized convolutional neural networks and explainable artificial intelligence-based analysis. Comput Methods Biomech Biomed Engin 2023:1-17. [PMID: 37850553 DOI: 10.1080/10255842.2023.2270102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 10/08/2023] [Indexed: 10/19/2023]
Abstract
This article proposes a noninvasive computer-aided assessment approach based on optimized convolutional neural network for healthy and pathological voice detection. Firstly, the input voice samples are first transformed into mel-spectrogram time-frequency visual representations and fed for training the CNN model. The time-frequency image captures inherent speech variations beneficial for healthy and pathological voice sample detection. The weights and biases of trained CNN network are further optimized using artificial bee colony (ABC) optimization algorithm resulting in optimum CNN network employed for testing unseen data. The proposed approach is evaluated using three popular and publicly available datasets: SVD, AVPD and VOICED. Experimental results emphasize that proposed ABC optimized CNN model shows improved accuracy performance by 1.02% compared to conventional CNN network illustrating data-independent discriminative representation ability. Finally, gradient-weighted class activation mapping (Grad-CAM) explainable artificial intelligence (XAI) is utilized to make the decision understandable.
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Affiliation(s)
- Roohum Jegan
- Department of Electronics and Communication Engineering, BMS College of Engineering, Bengluru, Karnataka, India
| | - R Jayagowri
- Department of Electronics and Communication Engineering, BMS College of Engineering, Bengluru, Karnataka, India
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Thakur K, Kaur M, Kumar Y. A Comprehensive Analysis of Deep Learning-Based Approaches for Prediction and Prognosis of Infectious Diseases. ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING : STATE OF THE ART REVIEWS 2023; 30:1-21. [PMID: 37359745 PMCID: PMC10249943 DOI: 10.1007/s11831-023-09952-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 05/25/2023] [Indexed: 06/28/2023]
Abstract
Artificial intelligence is the most powerful and promising tool for the present analytic technologies. It can provide real-time insights into disease spread and predict new pandemic epicenters by processing massive amount of data. The main aim of the paper is to detect and classify multiple infectious diseases using deep learning models. The work is conducted by using 29,252 images of COVID-19, Middle East Respiratory Syndrome Coronavirus, Pneumonia, normal, Severe Acute Respiratory Syndrome, tuberculosis, viral pneumonia, and lung opacity which has been collected from various disease datasets. These datasets are used to train the deep learning models such as EfficientNetB0, EfficientNetB1, EfficientNetB2, EfficientNetB3, NASNetLarge, DenseNet169, ResNet152V2, and InceptionResNetV2. The images have been initially graphically represented using exploratory data analysis to study the pixel intensity and find anomalies by extracting the color channels in an RGB histogram. Later, the dataset has been pre-processed to remove noisy signals using image augmentation and contrast enhancement techniques. Further, feature extraction techniques such as morphological values of contour features and Otsu thresholding have been applied to extract the feature. The models have been evaluated on the basis of various parameters, and it has been discovered that during the testing phase, the InceptionResNetV2 model generated the highest accuracy of 88%, best loss value of 0.399, and root mean square error of 0.63.
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Affiliation(s)
- Kavita Thakur
- Desh Bhagat University, Mandi Gobindgarh, Punjab India
| | - Manjot Kaur
- Desh Bhagat University, Mandi Gobindgarh, Punjab India
| | - Yogesh Kumar
- Department of CSE, School of Technology, Pandit Deendayal Energy University, Gandhinagar, Gujarat India
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Nadimi-Shahraki MH, Zamani H, Asghari Varzaneh Z, Mirjalili S. A Systematic Review of the Whale Optimization Algorithm: Theoretical Foundation, Improvements, and Hybridizations. ARCHIVES OF COMPUTATIONAL METHODS IN ENGINEERING : STATE OF THE ART REVIEWS 2023; 30:1-47. [PMID: 37359740 PMCID: PMC10220350 DOI: 10.1007/s11831-023-09928-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Accepted: 04/19/2023] [Indexed: 06/28/2023]
Abstract
Despite the simplicity of the whale optimization algorithm (WOA) and its success in solving some optimization problems, it faces many issues. Thus, WOA has attracted scholars' attention, and researchers frequently prefer to employ and improve it to address real-world application optimization problems. As a result, many WOA variations have been developed, usually using two main approaches improvement and hybridization. However, no comprehensive study critically reviews and analyzes WOA and its variants to find effective techniques and algorithms and develop more successful variants. Therefore, in this paper, first, the WOA is critically analyzed, then the last 5 years' developments of WOA are systematically reviewed. To do this, a new adapted PRISMA methodology is introduced to select eligible papers, including three main stages: identification, evaluation, and reporting. The evaluation stage was improved using three screening steps and strict inclusion criteria to select a reasonable number of eligible papers. Ultimately, 59 improved WOA and 57 hybrid WOA variants published by reputable publishers, including Springer, Elsevier, and IEEE, were selected as eligible papers. Effective techniques for improving and successful algorithms for hybridizing eligible WOA variants are described. The eligible WOA are reviewed in continuous, binary, single-objective, and multi/many-objective categories. The distribution of eligible WOA variants regarding their publisher, journal, application, and authors' country was visualized. It is also concluded that most papers in this area lack a comprehensive comparison with previous WOA variants and are usually compared only with other algorithms. Finally, some future directions are suggested.
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Affiliation(s)
- Mohammad H. Nadimi-Shahraki
- Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Najafabad, 8514143131 Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Najafabad, 8514143131 Iran
| | - Hoda Zamani
- Faculty of Computer Engineering, Najafabad Branch, Islamic Azad University, Najafabad, 8514143131 Iran
- Big Data Research Center, Najafabad Branch, Islamic Azad University, Najafabad, 8514143131 Iran
| | - Zahra Asghari Varzaneh
- Department of Computer Science, Faculty of Mathematics and Computer, Shahid Bahonar University of Kerman, Kerman, Iran
| | - Seyedali Mirjalili
- Centre for Artificial Intelligence Research and Optimisation, Torrens University Australia, Brisbane, 4006 Australia
- University Research and Innovation Center, Obuda University, 1034 Budapest, Hungary
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