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Hkiri N, Aounallah F, Fouzai K, Chouchani C, Asses N. Ability of marine-derived fungi isolated from polluted saline environment for enzymatic hydrocarbon remediation. Braz J Microbiol 2023; 54:1983-2000. [PMID: 37402057 PMCID: PMC10485234 DOI: 10.1007/s42770-023-01049-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 06/20/2023] [Indexed: 07/05/2023] Open
Abstract
Marine-derived fungi have attracted much attention due to their ability to present a new biosynthetic diversity. About 50 fungal isolates were obtained from Tunisian Mediterranean seawater and then screened for the presence of lignin-peroxidase (LiP), manganese-dependent peroxidase (MnP), and laccase (Lac) activities. The results obtained from both qualitative and quantitative assays showed that four of marine fungi isolates had a high potential to produce lignin-degrading enzymes. They were characterized taxonomically by a molecular method, based on international spacer (ITS) rDNA sequence analysis, as Chaetomium jodhpurense (MH667651.1), Chaetomium maderasense (MH665977.1), Paraconiothyrium variabile (MH667653.1), and Phoma betae (MH667655.1) which have been reported as producers of ligninolytic enzyme in the literature. The enzymatic activities and culture conditions were optimized using a Fractional Factorial design (2 7- 4). Then, fungal strains were incubated with the addition of 1% of crude oil in 50% of seawater for 25 days to evaluate their abilities to simultaneously degrade hydrocarbon compounds and to produce ligninolytic enzymes. The strain P. variabile exhibited the highest crude oil degradation rate (48.3%). Significant production of ligninolytic enzymes was recorded during the degradation process, which reached 2730 U/L for the MnP, 410 U/L for LiP, and 168.5 U/L for Lac. The FTIR and GC-MS analysis confirmed that the isolates rapidly biodegrade crude oil under ecological and economic conditions.
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Affiliation(s)
- Neila Hkiri
- LR- Microbial Ecology and Technology, INSAT, University of Carthage, Tunis, Tunisia
- LR- Environmental Sciences and Technologies, University of Carthage, ISSTE, Borj-Cedria, Tunisia
| | - Farah Aounallah
- LR- Microbial Ecology and Technology, INSAT, University of Carthage, Tunis, Tunisia
- LR- Environmental Sciences and Technologies, University of Carthage, ISSTE, Borj-Cedria, Tunisia
| | - Khaoula Fouzai
- LR- Microbial Ecology and Technology, INSAT, University of Carthage, Tunis, Tunisia
- LR- Environmental Sciences and Technologies, University of Carthage, ISSTE, Borj-Cedria, Tunisia
| | - Chedly Chouchani
- LR- Environmental Sciences and Technologies, University of Carthage, ISSTE, Borj-Cedria, Tunisia
| | - Nedra Asses
- LR- Microbial Ecology and Technology, INSAT, University of Carthage, Tunis, Tunisia.
- LR- Environmental Sciences and Technologies, University of Carthage, ISSTE, Borj-Cedria, Tunisia.
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Gagaoua M. Aqueous Methods for Extraction/Recovery of Macromolecules From Microorganisms of Atypical Environments: A Focus on Three Phase Partitioning. METHODS IN MICROBIOLOGY 2018. [DOI: 10.1016/bs.mim.2018.07.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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Yan JK, Wang YY, Qiu WY, Ma H, Wang ZB, Wu JY. Three-phase partitioning as an elegant and versatile platform applied to nonchromatographic bioseparation processes. Crit Rev Food Sci Nutr 2017; 58:2416-2431. [DOI: 10.1080/10408398.2017.1327418] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
| | | | | | - Haile Ma
- Jiangsu University, Zhenjiang, China
| | | | - Jian-Yong Wu
- The Hong Kong Polytechnic University, Department of Applied Biology & Chemical Technology, State Key Laboratory of Chinese Medicine and Molecular Pharmacology in Shenzhen, Hung Hom, Kowloon, Hong Kong
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Batista-García RA, Kumar VV, Ariste A, Tovar-Herrera OE, Savary O, Peidro-Guzmán H, González-Abradelo D, Jackson SA, Dobson ADW, Sánchez-Carbente MDR, Folch-Mallol JL, Leduc R, Cabana H. Simple screening protocol for identification of potential mycoremediation tools for the elimination of polycyclic aromatic hydrocarbons and phenols from hyperalkalophile industrial effluents. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2017; 198:1-11. [PMID: 28499155 DOI: 10.1016/j.jenvman.2017.05.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2016] [Revised: 04/28/2017] [Accepted: 05/05/2017] [Indexed: 06/07/2023]
Abstract
A number of fungal strains belonging to the ascomycota, basidiomycota and zygomycota genera were subjected to an in vitro screening regime to assess their ligninolytic activity potential, with a view to their potential use in mycoremediation-based strategies to remove phenolic compounds and polycyclic aromatic hydrocarbons (PAHs) from industrial wastewaters. All six basidiomycetes completely decolorized remazol brilliant blue R (RBBR), while also testing positive in both the guaiacol and gallic acid tests indicating good levels of lignolytic activity. All the fungi were capable of tolerating phenanthrene, benzo-α- pyrene, phenol and p-chlorophenol in agar medium at levels of 10 ppm. Six of the fungal strains, Pseudogymnoascus sp., Aspergillus caesiellus, Trametes hirsuta IBB 450, Phanerochate chrysosporium ATCC 787, Pleurotus ostreatus MTCC 1804 and Cadophora sp. produced both laccase and Mn peroxidase activity in the ranges of 200-560 U/L and 6-152 U/L, respectively, in liquid media under nitrogen limiting conditions. The levels of adsorption of the phenolic and PAHs were negligible with 99% biodegradation being observed in the case of benzo-α-pyrene, phenol and p-chlorophenol. The aforementioned six fungal strains were also found to be able to effectively treat highly alkaline industrial wastewater (pH 12.4). When this wastewater was supplemented with 0.1 mM glucose, all of the tested fungi, apart from A. caesiellus, displayed the capacity to remove both the phenolic and PAH compounds. Based on their biodegradative capacity we found T. hirsuta IBB 450 and Pseudogymnoascus sp., to have the greatest potential for further use in mycoremediation based strategies to treat wastestreams containing phenolics and PAHs.
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Affiliation(s)
- Ramón Alberto Batista-García
- Centro de Investigación en Dinámica Celular, Universidad Autónoma del Estado de Morelos (UAEM), Cuernavaca, Morelos, Mexico; Department of Civil Engineering, Université de Sherbrooke (UdeS), Sherbrooke, Quebec, J1K 2R1, Canada.
| | - Vaidyanathan Vinoth Kumar
- Department of Civil Engineering, Université de Sherbrooke (UdeS), Sherbrooke, Quebec, J1K 2R1, Canada; Department of Biotechnology, School of Bioengineering, SRM University, Kattankulathur, Tamil Nadu, India
| | - Arielle Ariste
- Department of Civil Engineering, Université de Sherbrooke (UdeS), Sherbrooke, Quebec, J1K 2R1, Canada
| | - Omar Eduardo Tovar-Herrera
- Instituto de Biotecnología, Facultad de Ciencias Biológicas, Universidad Autónoma de Nuevo León, San Nicolás de los Garza, Nuevo León, Mexico
| | - Olivier Savary
- Department of Civil Engineering, Université de Sherbrooke (UdeS), Sherbrooke, Quebec, J1K 2R1, Canada
| | - Heidy Peidro-Guzmán
- Centro de Investigación en Dinámica Celular, Universidad Autónoma del Estado de Morelos (UAEM), Cuernavaca, Morelos, Mexico
| | - Deborah González-Abradelo
- Centro de Investigación en Dinámica Celular, Universidad Autónoma del Estado de Morelos (UAEM), Cuernavaca, Morelos, Mexico
| | | | - Alan D W Dobson
- School of Microbiology, University College Cork, Cork, Ireland
| | | | | | - Roland Leduc
- Department of Civil Engineering, Université de Sherbrooke (UdeS), Sherbrooke, Quebec, J1K 2R1, Canada
| | - Hubert Cabana
- Department of Civil Engineering, Université de Sherbrooke (UdeS), Sherbrooke, Quebec, J1K 2R1, Canada.
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Nadar SS, Pawar RG, Rathod VK. Recent advances in enzyme extraction strategies: A comprehensive review. Int J Biol Macromol 2017; 101:931-957. [DOI: 10.1016/j.ijbiomac.2017.03.055] [Citation(s) in RCA: 60] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Revised: 03/07/2017] [Accepted: 03/10/2017] [Indexed: 12/19/2022]
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Kumar MA, Poonam S, Kumar VV, Baskar G, Seenuvasan M, Anuradha D, Sivanesan S. Mineralization of aromatic amines liberated during the degradation of a sulfonated textile colorant using Klebsiella pneumoniae strain AHM. Process Biochem 2017. [DOI: 10.1016/j.procbio.2017.03.012] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Pickl M, Fuchs M, Glueck SM, Faber K. The substrate tolerance of alcohol oxidases. Appl Microbiol Biotechnol 2015; 99:6617-42. [PMID: 26153139 PMCID: PMC4513209 DOI: 10.1007/s00253-015-6699-6] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2015] [Revised: 05/10/2015] [Accepted: 05/15/2015] [Indexed: 11/29/2022]
Abstract
Alcohols are a rich source of compounds from renewable sources, but they have to be activated in order to allow the modification of their carbon backbone. The latter can be achieved via oxidation to the corresponding aldehydes or ketones. As an alternative to (thermodynamically disfavoured) nicotinamide-dependent alcohol dehydrogenases, alcohol oxidases make use of molecular oxygen but their application is under-represented in synthetic biotransformations. In this review, the mechanism of copper-containing and flavoprotein alcohol oxidases is discussed in view of their ability to accept electronically activated or non-activated alcohols and their propensity towards over-oxidation of aldehydes yielding carboxylic acids. In order to facilitate the selection of the optimal enzyme for a given biocatalytic application, the substrate tolerance of alcohol oxidases is compiled and discussed: Substrates are classified into groups (non-activated prim- and sec-alcohols; activated allylic, cinnamic and benzylic alcohols; hydroxy acids; sugar alcohols; nucleotide alcohols; sterols) together with suitable alcohol oxidases, their microbial source, relative activities and (stereo)selectivities.
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Affiliation(s)
- Mathias Pickl
- Department of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010, Graz, Austria
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Feldman D, Kowbel DJ, Glass NL, Yarden O, Hadar Y. Detoxification of 5-hydroxymethylfurfural by the Pleurotus ostreatus lignolytic enzymes aryl alcohol oxidase and dehydrogenase. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:63. [PMID: 25897324 PMCID: PMC4403834 DOI: 10.1186/s13068-015-0244-9] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2014] [Accepted: 03/24/2015] [Indexed: 05/09/2023]
Abstract
BACKGROUND Current large-scale pretreatment processes for lignocellulosic biomass are generally accompanied by the formation of toxic degradation products, such as 5-hydroxymethylfurfural (HMF), which inhibit cellulolytic enzymes and fermentation by ethanol-producing yeast. Overcoming these toxic effects is a key technical barrier in the biochemical conversion of plant biomass to biofuels. Pleurotus ostreatus, a white-rot fungus, can efficiently degrade lignocellulose. In this study, we analyzed the ability of P. ostreatus to tolerate and metabolize HMF and investigated relevant molecular pathways associated with these processes. RESULTS P. ostreatus was capable to metabolize and detoxify HMF 30 mM within 48 h, converting it into 2,5-bis-hydroxymethylfuran (HMF alcohol) and 2,5-furandicarboxylic acid (FDCA), which subsequently allowed the normal yeast growth in amended media. We show that two enzymes groups, which belong to the ligninolytic system, aryl-alcohol oxidases and a dehydrogenase, are involved in this process. HMF induced the transcription and production of these enzymes and was accompanied by an increase in activity levels. We also demonstrate that following the induction of these enzymes, HMF could be metabolized in vitro. CONCLUSIONS Aryl-alcohol oxidase and dehydrogenase gene family members are part of the transcriptional and subsequent translational response to HMF exposure in P. ostreatus and are involved in HMF transformation. Based on our data, we propose that these enzymatic capacities of P. ostreatus either be integrated in biomass pretreatment or the genes encoding these enzymes may function to detoxify HMF via heterologous expression in fermentation organisms, such as Saccharomyces cerevisiae.
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Affiliation(s)
- Daria Feldman
- />Department of Plant Pathology and Microbiology, The R.H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, POB 12, Rehovot, 76100 Israel
| | - David J Kowbel
- />Department of Plant and Microbial Biology, University of California at Berkeley, 111 Koshland Hall, Berkeley, California 94720 USA
| | - N Louise Glass
- />Department of Plant and Microbial Biology, University of California at Berkeley, 111 Koshland Hall, Berkeley, California 94720 USA
| | - Oded Yarden
- />Department of Plant Pathology and Microbiology, The R.H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, POB 12, Rehovot, 76100 Israel
| | - Yitzhak Hadar
- />Department of Plant Pathology and Microbiology, The R.H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, POB 12, Rehovot, 76100 Israel
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Extraction and purification of beta-amylase from stems of Abrus precatorius by three phase partitioning. Food Chem 2015; 183:144-53. [PMID: 25863622 DOI: 10.1016/j.foodchem.2015.03.028] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2014] [Revised: 02/24/2015] [Accepted: 03/10/2015] [Indexed: 11/23/2022]
Abstract
The stems of Abrus precatorius were used to extract a beta-amylase enriched fraction. A three phase partitioning method and a Doehlert design with 3 variables (ratio of crude extract/t-butanol, the ammonium sulphate saturation and pH) were used. The data was fitted in a second-order polynomial model and the parameters were optimized to enrich beta-amylase. Experimental responses for the modulation were recovery of activity and the purification factor. The optimal conditions were: a ratio of crude extract/t-butanol of 0.87 (v/v), saturation in ammonium sulphate of 49.46% (w/v) and a pH of 5.2. An activity recovery of 156.2% and a purification factor of 10.17 were found. The enriched enzyme was identified as a beta-amylase and its molecular weight was 60.1kDa. Km and Vmax values were 79.37mg/ml and 5.13U/ml, respectively and the highest activity was registered at a temperature of 70°C and a pH between 6 and 6.5. A significant stabilization of the beta-amylase was observed up to 65°C.
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Rather GM, Gupta MN. Three phase partitioning leads to subtle structural changes in proteins. Int J Biol Macromol 2013; 60:134-40. [DOI: 10.1016/j.ijbiomac.2013.05.018] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2013] [Revised: 05/02/2013] [Accepted: 05/18/2013] [Indexed: 11/28/2022]
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An overview on alcohol oxidases and their potential applications. Appl Microbiol Biotechnol 2013; 97:4259-75. [DOI: 10.1007/s00253-013-4842-9] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2012] [Revised: 03/06/2013] [Accepted: 03/07/2013] [Indexed: 10/27/2022]
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Kumar VV, Sathyaselvabala V, Premkumar M, Vidyadevi T, Sivanesan S. Biochemical characterization of three phase partitioned laccase and its application in decolorization and degradation of synthetic dyes. ACTA ACUST UNITED AC 2012. [DOI: 10.1016/j.molcatb.2011.08.015] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Vinoth Kumar V, Premkumar MP, Sathyaselvabala VK, Dineshkirupha S, Nandagopal J, Sivanesan S. Aspergillus niger exo-inulinase purification by three phase partitioning. Eng Life Sci 2011. [DOI: 10.1002/elsc.201000180] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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Tamboli DP, Telke AA, Dawkar VV, Jadhav SB, Govindwar SP. Purification and characterization of bacterial aryl alcohol oxidase from Sphingobacterium sp. ATM and its uses in textile dye decolorization. BIOTECHNOL BIOPROC E 2011. [DOI: 10.1007/s12257-011-0031-9] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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