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Huang X, Shi L, Lin Y, Zhang C, Liu P, Zhang R, Chen Q, Ouyang X, Gao Y, Wang Y, Sun T. Pycnoporus sanguineus Polysaccharides as Reducing Agents: Self-Assembled Composite Nanoparticles for Integrative Diabetic Wound Therapy. Int J Nanomedicine 2023; 18:6021-6035. [PMID: 37908670 PMCID: PMC10614664 DOI: 10.2147/ijn.s427055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Accepted: 10/10/2023] [Indexed: 11/02/2023] Open
Abstract
Purpose Diabetic foot ulcers (DFU) are severe complications of diabetes, posing significant health and societal challenges. Elevated levels of reactive oxygen species (ROS) at the ulcer site hinder wound healing in most patients, while individuals with diabetes are also more susceptible to bacterial infections. This study aims to synthesize a comprehensive therapeutic material using polysaccharides from Pycnoporus sanguineus to promote DFU wound healing, reduce ROS levels, and minimize bacterial infections. Methods Polysaccharides from P.sanguineus were employed as reducing and stabilizing agents to fabricate polysaccharide-based composite particles (PCPs) utilizing silver ions as templates. PCPs were characterized via UV-Vis, TEM, FTIR, XRD, and DLS. The antioxidant, antimicrobial, and cytotoxic properties of PCPs were assessed through in vitro and cellular experiments. The effects and mechanisms of PCPs on wound healing were evaluated using a diabetic ulcer mouse model. Results PCPs exhibited spherical particles with an average size of 57.29±22.41 nm and effectively combined polysaccharides' antioxidant capacity with silver nanoparticles' antimicrobial function, showcasing synergistic therapeutic effects. In vitro and cellular experiments demonstrated that PCPs reduced cellular ROS levels by 54% at a concentration of 31.25 μg/mL and displayed potent antibacterial activity at 8 μg/mL. In vivo experiments revealed that PCPs enhanced the activities of superoxide dismutase (SOD) and catalase (CAT), promoting wound healing in DFUs and lowering the risk of bacterial infections. Conclusion The synthesized PCPs offer a novel strategy for the comprehensive treatment of DFU. By integrating antioxidant and antimicrobial functions, PCPs effectively promote wound healing and alleviate patient suffering. The present study demonstrates a new strategy for the integrated treatment of diabetic wounds and expands the way for developing and applying the polysaccharide properties of P. sanguineus.
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Affiliation(s)
- Xiaofei Huang
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Lihua Shi
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Yin Lin
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Cong Zhang
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Penghui Liu
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Ran Zhang
- School of Pharmacy, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Qiqi Chen
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Xudong Ouyang
- School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Yuanyuan Gao
- School of Pharmacy, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Yingshuai Wang
- School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
| | - Tongyi Sun
- Shandong Key Laboratory of Proteins and Peptides Pharmaceutical Engineering, Shandong Universities Key Laboratory of Biological Medicine, School of Life Science and Technology, Weifang Medical University, Weifang, Shandong, 261053, People’s Republic of China
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de Souza L, Shivakumar S, Das A. Dual phase statistical optimization of biological pre-treatment of sugarcane bagasse with Pycnoporus coccineus MScMS1 for polyhydroxyalkanoates production. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 302:113948. [PMID: 34678541 DOI: 10.1016/j.jenvman.2021.113948] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/11/2021] [Revised: 10/01/2021] [Accepted: 10/14/2021] [Indexed: 06/13/2023]
Abstract
Biological pre-treatment is the removal of recalcitrant lignin from lignocellulose through the action of lignin degrading organisms and/or their ligninolytic enzymes system. Despite numerous environmental benefits, biological pre-treatment has been side-lined due to its prolonged periods of fermentation, ascribed to the slow growth rate of lignin degrading organisms. Thus, the present work adopted a dual phase statistical optimization approach for the biological pre-treatment of sugarcane bagasse, with Pycnoporus coccineus MScMS1, using Taguchi Orthogonal Array, in conjunction with Response Surface Methodology, to address this issue. Amplification of the organism's functioning resulted in an enhancement of sugar productivity and yield accompanied by a significant reduction in fermentation time. Optimized sugar concentration was approx. 18 g/L within 4 days of pre-treatment, with productivity of 4.5 g/(L.day). Substrate compositional analysis revealed significant (p < 0.05) reduction of lignin by 70% in the biologically pre-treated substrate, along with significantly (p < 0.05) higher quantities of water soluble components (35 ± 0.95 g) and cellulose content (33 ± 0.18 g), as compared to the untreated substrate. Appreciable levels of xylose, arabinose, glucose and galactose were detected in hydrolysates from biologically pre-treated bagasse. Furthermore, Bacillus megaterium Ti3, a potent polyhydroxyalkanoates (PHA) producer, was grown on these sugar-rich hydrolysates and generated 0.58 g/L PHA in 24 h of fermentation accompanied by 0.88 g/L dry cell weight and 65% PHA accumulation. These results were comparable with those from a glucose medium. Thus, the present study was successful in optimizing the biological pre-treatment of sugarcane bagasse and utilizing the resultant sugar-rich hydrolysates, as inexpensive and renewable raw materials, for PHA production.
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Affiliation(s)
- Larissa de Souza
- Department of Microbiology, School of Sciences, JAIN (Deemed-to-be University), #34, 1st Cross, J.C. Road, Bangalore, 560027, Karnataka, India.
| | - Srividya Shivakumar
- Department of Microbiology, School of Sciences, JAIN (Deemed-to-be University), #34, 1st Cross, J.C. Road, Bangalore, 560027, Karnataka, India.
| | - Arijit Das
- Department of Microbiology, School of Sciences, JAIN (Deemed-to-be University), #34, 1st Cross, J.C. Road, Bangalore, 560027, Karnataka, India.
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Anisha GS. Microbial α-galactosidases: Efficient biocatalysts for bioprocess technology. BIORESOURCE TECHNOLOGY 2022; 344:126293. [PMID: 34752888 DOI: 10.1016/j.biortech.2021.126293] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 10/28/2021] [Accepted: 11/01/2021] [Indexed: 06/13/2023]
Abstract
Galactomannans, abundantly present in plant biomass, can be used as renewable fermentation feedstock for biorefineries working for the production of bioethanol and other value-added products. The complete and efficient bioconversion of biomass to fermentable sugars for the generation of biofuels and other value-added products require the concerted action of accessory enzymes like α-galactosidases, which can work in cohesion with other carbohydrases in an enzyme cocktail. In the paper industry, α-galactosidases enhance the bleaching effect of endo-β-1,4-mannanases on softwood kraft pulp. Microbial α-galactosidases also find applications in the treatment of legume foods, recovery of sucrose from sugar beet syrup, improving the rheological properties of galactomannans, and synthesis of α-galactooligosaccharides to be used as functional food ingredients. Owing to their industrial applications, there is a surge in the research focused on α-galactosidases. The current review illustrates the diverse industrial applications of microbial α-galactosidases and their challenges and prospects.
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Affiliation(s)
- Grace Sathyanesan Anisha
- Post-Graduate and Research Department of Zoology, Government College for Women, Thiruvananthapuram, Kerala, India.
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PsAA9A, a C1-specific AA9 lytic polysaccharide monooxygenase from the white-rot basidiomycete Pycnoporus sanguineus. Appl Microbiol Biotechnol 2020; 104:9631-9643. [DOI: 10.1007/s00253-020-10911-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2020] [Revised: 09/04/2020] [Accepted: 09/14/2020] [Indexed: 10/23/2022]
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Bhatia S, Singh A, Batra N, Singh J. Microbial production and biotechnological applications of α-galactosidase. Int J Biol Macromol 2019; 150:1294-1313. [PMID: 31747573 DOI: 10.1016/j.ijbiomac.2019.10.140] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2019] [Revised: 10/12/2019] [Accepted: 10/15/2019] [Indexed: 12/13/2022]
Abstract
α-Galactosidase, (E.C. 3.2.1.22) is an exoglycosidase that target galactooligosaccharides such as raffinose, melibiose, stachyose and branched polysaccharides like galactomannans and galacto-glucomannans by catalysing the hydrolysis of α-1,6 linked terminal galactose residues. The enzyme has been isolated and characterized from microbial, plant and animal sources. This ubiquitous enzyme possesses physiological significance and immense industrial potential. Optimization of the growth conditions and efficient purification strategies can lead to a significant increase in the enzyme production. To boost commercial productivity, cloning of novel α-galactosidase genes and their heterologous expression in suitable host has gained popularity. Enzyme immobilization leads to its greater reutilization, superior thermostability, pH tolerance and increased activity. The enzyme is well explored in food industry in the removal of raffinose family oligosaccharides (RFOs) in soymilk and sugar crystallization process. It also improves animal feed quality and biomass processing. Applications of the enzyme is in the area of biomedicine includes therapeutic advances in treatment of Fabry disease, blood group conversion and removal of α-gal type immunogenic epitopes in xenotransplantation. With considerable biotechnological applications, this enzyme has been vastly commercialized and holds greater future prospects.
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Affiliation(s)
- Sonu Bhatia
- Department of Biotechnology, Panjab University, Chandigarh, India
| | - Abhinashi Singh
- Department of Biotechnology, G.G.D.S.D. College, Sector-32-C, Chandigarh, India
| | - Navneet Batra
- Department of Biotechnology, G.G.D.S.D. College, Sector-32-C, Chandigarh, India
| | - Jagtar Singh
- Department of Biotechnology, Panjab University, Chandigarh, India.
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Abdella A, El-Baz AF, Ibrahim IA, Mahrous EE, Yang ST. Biotransformation of soy flour isoflavones by Aspergillus niger NRRL 3122 β-glucosidase enzyme. Nat Prod Res 2018; 32:2382-2391. [PMID: 29224366 DOI: 10.1080/14786419.2017.1413569] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Accepted: 12/02/2017] [Indexed: 10/18/2022]
Abstract
β-glucosidase enzyme produced from Aspergillus niger NRRL 3122 has been partially purified and characterised. Its molecular weight was 180 KDa. The optimal pH and temperature were 3.98 and 55 °C, respectively. It promoted the hydrolysis of soy flour isoflavone glycosides to their aglycone. Two-level Plackett-Burman design was applied and effective variables for genistein production were determined. Reaction time had a significant positive effect, and pH had a significant negative effect. They were further evaluated using Box-Behnken model. Accordingly, the optimal combination of the major reaction affecting factors was reaction time, 5 h and pH, 4. The concentration of genistein increased by 11.73 folds using this optimal combination. The antioxidant activity of the non-biotransformed and biotransformed soy flour extracts was determined by DPPH method. It was found that biotransformation increased the antioxidant activity by four folds.
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Affiliation(s)
- Asmaa Abdella
- a Department of Industrial Biotechnology , Genetic Engineering and Biotechnology Research Institute, University of Sadat City , Sadat City , Egypt
- c William G. Lowrie Department of Chemical & Biomolecular Engineering , The Ohio State University , Columbus , OH , USA
| | - Ashraf F El-Baz
- a Department of Industrial Biotechnology , Genetic Engineering and Biotechnology Research Institute, University of Sadat City , Sadat City , Egypt
- c William G. Lowrie Department of Chemical & Biomolecular Engineering , The Ohio State University , Columbus , OH , USA
| | - Ibrahim A Ibrahim
- b Department of Plant Biotechnology , Genetic Engineering and Biotechnology Research Institute, University of Sadat City , Sadat City , Egypt
| | - Emad Eldin Mahrous
- b Department of Plant Biotechnology , Genetic Engineering and Biotechnology Research Institute, University of Sadat City , Sadat City , Egypt
| | - Shang-Tian Yang
- c William G. Lowrie Department of Chemical & Biomolecular Engineering , The Ohio State University , Columbus , OH , USA
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Niderhaus C, Garrido M, Insani M, Campos E, Wirth S. Heterologous production and characterization of a thermostable GH10 family endo-xylanase from Pycnoporus sanguineus BAFC 2126. Process Biochem 2018. [DOI: 10.1016/j.procbio.2018.01.017] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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Sugarcane bagasse saccharification by purified β-glucosidases from Chrysoporthe cubensis. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2017.10.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
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Coniglio RO, Fonseca MI, Villalba LL, Zapata PD. Screening of new secretory cellulases from different supernatants of white rot fungi from Misiones, Argentina. Mycology 2016. [DOI: 10.1080/21501203.2016.1267047] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022] Open
Affiliation(s)
- Romina Olga Coniglio
- Laboratorio de Biotecnología Molecular, Instituto de Biotecnología de Misiones, CONICET, Facultad de Ciencias Exactas, Químicas y Naturales, Universidad Nacional de Misiones, Posadas, Argentina
| | - María Isabel Fonseca
- Laboratorio de Biotecnología Molecular, Instituto de Biotecnología de Misiones, CONICET, Facultad de Ciencias Exactas, Químicas y Naturales, Universidad Nacional de Misiones, Posadas, Argentina
| | - Laura Lidia Villalba
- Laboratorio de Biotecnología Molecular, Instituto de Biotecnología de Misiones, CONICET, Facultad de Ciencias Exactas, Químicas y Naturales, Universidad Nacional de Misiones, Posadas, Argentina
| | - Pedro Darío Zapata
- Laboratorio de Biotecnología Molecular, Instituto de Biotecnología de Misiones, CONICET, Facultad de Ciencias Exactas, Químicas y Naturales, Universidad Nacional de Misiones, Posadas, Argentina
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Valadares F, Gonçalves TA, Gonçalves DSPO, Segato F, Romanel E, Milagres AMF, Squina FM, Ferraz A. Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification. BIOTECHNOLOGY FOR BIOFUELS 2016; 9:110. [PMID: 27222665 PMCID: PMC4877993 DOI: 10.1186/s13068-016-0525-y] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2016] [Accepted: 05/10/2016] [Indexed: 05/25/2023]
Abstract
BACKGROUND Glycoside hydrolases (GHs) and accessory proteins are key components for efficient and cost-effective enzymatic hydrolysis of polysaccharides in modern, biochemically based biorefineries. Currently, commercialized GHs and accessory proteins are produced by ascomycetes. However, the role of wood decay basidiomycetes proteins in biomass saccharification has not been extensively pursued. Wood decay fungi degrade polysaccharides in highly lignified tissues in natural environments, and are a promising enzyme source for improving enzymatic cocktails that are designed for in vitro lignocellulose conversion. RESULTS GHs and accessory proteins were produced by representative brown- and white-rot fungi, Laetiporus sulphureus and Pleurotus ostreatus, respectively. Concentrated protein extracts were then used to amend commercial enzymatic cocktails for saccharification of alkaline-sulfite pretreated sugarcane bagasse. The main enzymatic activities found in the wood decay fungal protein extracts were attributed to endoglucanases, xylanases and β-glucosidases. Cellobiohydrolase (CBH) activities in the L. sulphureus and P. ostreatus extracts were low and nonexistent, respectively. The initial glucan conversion rates were boosted when the wood decay fungal proteins were used to replace half of the enzymes from the commercial cocktails. L. sulphureus proteins increased the glucan conversion levels, with values above those observed for the full load of commercial enzymes. Wood decay fungal proteins also enhanced the xylan conversion efficiency due to their high xylanase activities. Proteomic studies revealed 104 and 45 different proteins in the P. ostreatus and L. sulphureus extracts, respectively. The enhancement of the saccharification of alkaline-pretreated substrates by the modified enzymatic cocktails was attributed to the following protein families: GH5- and GH45-endoglucanases, GH3-β-glucosidases, and GH10-xylanases. CONCLUSIONS The extracellular proteins produced by wood decay fungi provide useful tools to improve commercial enzyme cocktails that are currently used for the saccharification of alkaline-pretreated lignocellulosic substrates. The relevant proteins encompass multiple glycoside hydrolase families, including the GH5- and GH45-endoglucanases, GH3-β-glucosidases, and GH10-xylanases.
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Affiliation(s)
- Fernanda Valadares
- />Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Thiago A. Gonçalves
- />Laboratório Nacional de Ciência & Tecnolologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, SP 13083-970 Brazil
- />Departamento de Bioquímica, Instituto de Biologia (IB), Universidade Estadual de Campinas (UNICAMP), Campinas, SP 13083-862 Brazil
| | - Dayelle S. P. O. Gonçalves
- />Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Fernando Segato
- />Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Elisson Romanel
- />Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Adriane M. F. Milagres
- />Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
| | - Fabio M. Squina
- />Laboratório Nacional de Ciência & Tecnolologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, SP 13083-970 Brazil
| | - André Ferraz
- />Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, Lorena, SP 12602-810 Brazil
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Teixeira da Silva VDC, de Souza Coto AL, de Carvalho Souza R, Bertoldi Sanchez Neves M, Gomes E, Bonilla-Rodriguez GO. Effect of pH, Temperature, and Chemicals on the Endoglucanases and β-Glucosidases from the Thermophilic Fungus Myceliophthora heterothallica F.2.1.4. Obtained by Solid-State and Submerged Cultivation. Biochem Res Int 2016; 2016:9781216. [PMID: 27242927 PMCID: PMC4875970 DOI: 10.1155/2016/9781216] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2015] [Revised: 03/03/2016] [Accepted: 04/12/2016] [Indexed: 01/13/2023] Open
Abstract
This work reports endoglucanase and beta-glucosidase production by the thermophilic fungus Myceliophthora heterothallica in solid-state (SSC) and submerged (SmC) cultivation. Wheat bran and sugarcane bagasse were used for SSC and cardboard for SmC. Highest endoglucanase production in SSC occurred after 192 hours: 1,170.6 ± 0.8 U/g, and in SmC after 168 hours: 2,642 ± 561 U/g. The endoglucanases and beta-glucosidases produced by both cultivation systems showed slight differences concerning their optimal pH and temperature. The number of endoglucanases was also different: six isoforms in SSC and ten in SmC. Endoglucanase activity remained above 50% after incubation between pH 3.0 and 9.0 for 24 h for both cultivation systems. The effect of several chemicals displayed variation between SSC and SmC isoenzymes. Manganese activated the enzymes from SmC but inhibited those from SSC. For β-glucosidases, maximum production on SmC was 244 ± 48 U/g after 168 hours using cardboard as carbon source. In SSC maximum production reached 10.9 ± 0.3 U/g after 240 h with 1 : 1 wheat bran and sugarcane bagasse. Manganese exerted a significant activation on SSC β-glucosidases, and glucose inhibited the enzymes from both cultivation systems. FeCl3 exerted the strongest inhibition for endoglucanases and β-glucosidases.
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Affiliation(s)
- Vanessa de Cássia Teixeira da Silva
- Laboratório de Bioquímica de Proteínas, Departamento de Química e Ciências Ambientais, Universidade Estadual Paulista (UNESP), Rua Cristovão Colombo 2265, 15054-000 São José do Rio Preto, SP, Brazil
| | - Amanda Lais de Souza Coto
- Laboratório de Bioquímica de Proteínas, Departamento de Química e Ciências Ambientais, Universidade Estadual Paulista (UNESP), Rua Cristovão Colombo 2265, 15054-000 São José do Rio Preto, SP, Brazil
| | - Rafael de Carvalho Souza
- Laboratório de Bioquímica de Proteínas, Departamento de Química e Ciências Ambientais, Universidade Estadual Paulista (UNESP), Rua Cristovão Colombo 2265, 15054-000 São José do Rio Preto, SP, Brazil
| | - Marcello Bertoldi Sanchez Neves
- Laboratório de Bioquímica de Proteínas, Departamento de Química e Ciências Ambientais, Universidade Estadual Paulista (UNESP), Rua Cristovão Colombo 2265, 15054-000 São José do Rio Preto, SP, Brazil
| | - Eleni Gomes
- Laboratório de Bioquímica e Microbiologia Aplicadas, Departamento de Biologia, Universidade Estadual Paulista (UNESP), Rua Cristovão Colombo 2265, 15054-000 São José do Rio Preto, SP, Brazil
| | - Gustavo Orlando Bonilla-Rodriguez
- Laboratório de Bioquímica de Proteínas, Departamento de Química e Ciências Ambientais, Universidade Estadual Paulista (UNESP), Rua Cristovão Colombo 2265, 15054-000 São José do Rio Preto, SP, Brazil
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Khare SK, Pandey A, Larroche C. Current perspectives in enzymatic saccharification of lignocellulosic biomass. Biochem Eng J 2015. [DOI: 10.1016/j.bej.2015.02.033] [Citation(s) in RCA: 95] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger. Biotechnol Lett 2015; 38:65-70. [PMID: 26354856 PMCID: PMC4706842 DOI: 10.1007/s10529-015-1951-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2015] [Accepted: 09/02/2015] [Indexed: 12/15/2022]
Abstract
Objectives To increase the efficiency of enzymatic hydrolysis for plant biomass conversion into renewable biofuel and chemicals. Results By overexpressing the point mutation A824 V transcriptional activator Xyr1 in Trichoderma reesei, carboxymethyl cellulase, cellobiosidase and β-d-glucosidase activities of the best mutant were increased from 1.8 IU/ml, 0.1 IU/ml and 0.05 IU/ml to 4.8 IU/ml, 0.4 IU/ml and 0.3 IU/ml, respectively. The sugar yield of wheat straw saccharification by combining enzymes from this mutant and the Aspergillus niger genetically modified strain ΔcreA/xlnRc/araRc was improved up to 7.5 mg/ml, a 229 % increase compared to the combination of wild type strains. Conclusions Mixing enzymes from T. reesei and A. niger combined with the genetic modification of transcription factors is a promising strategy to increase saccharification efficiency. Electronic supplementary material The online version of this article (doi:10.1007/s10529-015-1951-9) contains supplementary material, which is available to authorized users.
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Ribeiro LF, Nicholes N, Tullman J, Ribeiro LFC, Fuzo CA, Vieira DS, Furtado GP, Ostermeier M, Ward RJ. Insertion of a xylanase in xylose binding protein results in a xylose-stimulated xylanase. BIOTECHNOLOGY FOR BIOFUELS 2015; 8:118. [PMID: 26279676 PMCID: PMC4536891 DOI: 10.1186/s13068-015-0293-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2015] [Accepted: 07/24/2015] [Indexed: 05/16/2023]
Abstract
BACKGROUND Product inhibition can reduce catalytic performance of enzymes used for biofuel production. Different mechanisms can cause this inhibition and, in most cases, the use of classical enzymology approach is not sufficient to overcome this problem. Here we have used a semi-rational protein fusion strategy to create a product-stimulated enzyme. RESULTS A semi-rational protein fusion strategy was used to create a protein fusion library where the Bacillus subtilis GH11 xylanase A (XynA) was inserted at 144 surface positions of the Escherichia coli xylose binding protein (XBP). Two XynA insertions at XBP positions 209 ([209]XBP-Xyn-XBP) and 262 ([262]XBP-Xyn-XBP) showed a 20% increased xylanolytic activity in the presence of xylose, conditions where native XynA is inhibited. Random linkers of 1-4 Gly/Ala residues were inserted at the XynA N- and C-termini in the [209]XBP and [262]XBP, and the chimeras 2091A and 2621B were isolated, showing a twofold increased xylanolytic activity in the presence of xylose and k cat values of 200 and 240 s(-1) in the 2091A and 2621B, respectively, as compared to 70 s(-1) in the native XynA. The xylose affinity of the XBP was unchanged in the chimeras, showing that the ~3- to 3.5-fold stimulation of catalytic efficiency by xylose was the result of allosteric coupling between the XBP and XynA domains. Molecular dynamics simulations of the chimeras suggested conformation alterations in the XynA on xylose binding to the XBP resulted in exposure of the catalytic cavity and increased mobility of catalytic site residues as compared to the native XynA. CONCLUSIONS These results are the first report of engineered glycosyl hydrolase showing allosteric product stimulation and suggest that the strategy may be more widely employed to overcome enzyme product inhibition and to improve catalytic performance. Graphical abstractProtein fusion of a GH11 xylanase (in red) and a xylose binding protein (XBP, in blue) results in a xylanase-XBP chimera that presents allosteric activation of the xylanase activity by xylose (shown as a space-filled molecule bound to the xylanase-XBP chimera).
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Affiliation(s)
- Lucas Ferreira Ribeiro
- />Johns Hopkins University, Baltimore, MD USA
- />Departamento de Bioquímica e Imunologia, FMRP, Universidade de São Paulo-USP, Ribeirão Preto, SP Brazil
| | | | - Jennifer Tullman
- />Institute for Bioscience and Biotechnology Research, Rockville, MD USA
| | - Liliane Fraga Costa Ribeiro
- />Departamento de Bioquímica e Imunologia, FMRP, Universidade de São Paulo-USP, Ribeirão Preto, SP Brazil
- />University of Maryland Baltimore County-UMBC, Baltimore, MD USA
| | - Carlos Alessandro Fuzo
- />Departamento de Química, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo-USP, Av. Bandeirantes, 3900, Ribeirão Preto, SP 14040-901 Brazil
| | | | - Gilvan Pessoa Furtado
- />Departamento de Bioquímica e Imunologia, FMRP, Universidade de São Paulo-USP, Ribeirão Preto, SP Brazil
| | | | - Richard John Ward
- />Brazilian Bioethanol Science and Technology Laboratory CTBE/CNPEM, Campinas, Brazil
- />Departamento de Química, Faculdade de Filosofia, Ciências e Letras de Ribeirão Preto, Universidade de São Paulo-USP, Av. Bandeirantes, 3900, Ribeirão Preto, SP 14040-901 Brazil
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Sideney BO, Zipora MQS, Francini YK, Shaiana PM. Cellulases produced by the endophytic fungus Pycnoporus sanguineus (L.) Murrill. ACTA ACUST UNITED AC 2015. [DOI: 10.5897/ajar2015.9487] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]
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16
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Lesage-Meessen L, Bou M, Sigoillot JC, Faulds CB, Lomascolo A. Essential oils and distilled straws of lavender and lavandin: a review of current use and potential application in white biotechnology. Appl Microbiol Biotechnol 2015; 99:3375-85. [PMID: 25761625 DOI: 10.1007/s00253-015-6511-7] [Citation(s) in RCA: 64] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2014] [Revised: 02/25/2015] [Accepted: 02/25/2015] [Indexed: 01/25/2023]
Abstract
The Lavandula genus, which includes lavender (Lavandula angustifolia) and lavandin (L. angustifolia × Lavandula latifolia), is cultivated worldwide for its essential oils, which find applications in perfumes, cosmetics, food processing and, more recently, in aromatherapy products. The chemical composition of lavender and lavandin essential oils, usually produced by steam distillation from the flowering stems, is characterized by the presence of terpenes (e.g. linalool and linalyl acetate) and terpenoids (e.g. 1,8-cineole), which are mainly responsible for their characteristic flavour and their biological and therapeutic properties. Lavender and lavandin distilled straws, the by-products of oil extraction, were traditionally used for soil replenishment or converted to a fuel source. They are mineral- and carbon-rich plant residues and, therefore, a cheap, readily available source of valuable substances of industrial interest, especially aroma and antioxidants (e.g. terpenoids, lactones and phenolic compounds including coumarin, herniarin, α-bisabolol, rosmarinic and chlorogenic acids). Accordingly, recent studies have emphasized the possible uses of lavender and lavandin straws in fermentative or enzymatic processes involving various microorganisms, especially filamentous fungi, for the production of antimicrobials, antioxidants and other bioproducts with pharmaceutical and cosmetic activities, opening up new challenging perspectives in white biotechnology applications.
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Maitan-Alfenas GP, Visser EM, Guimarães VM. Enzymatic hydrolysis of lignocellulosic biomass: converting food waste in valuable products. Curr Opin Food Sci 2015. [DOI: 10.1016/j.cofs.2014.10.001] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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18
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Optimization of Endoglucanase and Xylanase Activities from Fusarium verticillioides for Simultaneous Saccharification and Fermentation of Sugarcane Bagasse. Appl Biochem Biotechnol 2013; 172:1332-46. [DOI: 10.1007/s12010-013-0572-9] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2013] [Accepted: 09/30/2013] [Indexed: 10/26/2022]
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19
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Direct ethanol production from glucose, xylose and sugarcane bagasse by the corn endophytic fungi Fusarium verticillioides and Acremonium zeae. J Biotechnol 2013; 168:71-7. [DOI: 10.1016/j.jbiotec.2013.07.032] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2013] [Revised: 07/27/2013] [Accepted: 07/31/2013] [Indexed: 11/21/2022]
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20
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Valencia EY, Chambergo FS. Mini-review: Brazilian fungi diversity for biomass degradation. Fungal Genet Biol 2013; 60:9-18. [PMID: 23872076 DOI: 10.1016/j.fgb.2013.07.005] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Revised: 06/28/2013] [Accepted: 07/08/2013] [Indexed: 01/01/2023]
Abstract
Brazil houses over 10% of the total number of known species on Earth, with a great diversity of plants and fungi. The collection, isolation, identification and conservation of filamentous fungi with relevance to agriculture, pharmaceutical, food and biotechnological industries in Biological Resource Centers (CRBs) is very important to the development of a nation's scientific and technological infrastructure. In Brazil, 36 fungal collections are registered in the database of International Collections. Several federal and state programs have encouraged the formation of a researcher's network in order to study natural resources and the nation's biodiversity. In this context, Brazilian researchers have been on the frontiers of knowledge, investigating the enzymatic systems from native filamentous fungi with potential for biomass degradation and biotechnological application. In this review, we address recent progress in Brazilian fungal research, focusing on the identification and study of fungi and enzymes with potential for biomass degradation and application in bioenergy.
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Affiliation(s)
- Estela Y Valencia
- Departamento de Microbiologia Microbiana, Centro Nacional de Biotecnologia (CSIC), Madrid, Spain.
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21
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Falkoski DL, Guimarães VM, de Almeida MN, Alfenas AC, Colodette JL, de Rezende ST. Chrysoporthe cubensis: a new source of cellulases and hemicellulases to application in biomass saccharification processes. BIORESOURCE TECHNOLOGY 2013; 130:296-305. [PMID: 23313674 DOI: 10.1016/j.biortech.2012.11.140] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2012] [Revised: 10/10/2012] [Accepted: 11/30/2012] [Indexed: 05/24/2023]
Abstract
The plant pathogenic fungus Chrysoporthe cubensis was cultivated under solid state employing different substrates and the highest endoglucanase (33.84Ug(-1)), FPase (2.52Ug(-1)), β-glucosidase (21.55Ug(-1)) and xylanase (362.38Ug(-1)) activities were obtained using wheat bran as carbon source. Cellulases and xylanase produced by C. cubensis showed maximal hydrolysis rate at pH 4.0 and in a temperature range of 50-60°C. All enzymatic activities were highly stable at 40 and 50°C through 48h of pre-incubation. Saccharification of alkaline pretreated sugarcane bagasse by crude enzyme extract from C. cubensis resulted in release of 320.8mg/g and 288.7mg/g of glucose and xylose, respectively. On another hand, a similar assay employing commercial cellulase preparation resulted in release of 250.6mg/g and 62.1mg/g of glucose and xylose, respectively. Cellulolytic extract from C. cubensis showed a great potential to be used in biomass saccharification processes.
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Affiliation(s)
- Daniel Luciano Falkoski
- Department of Biochemistry and Molecular Biology, Federal University of Viçosa, Viçosa, Minas Gerais 36570-000, Brazil
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22
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Manavalan T, Manavalan A, Thangavelu KP, Heese K. Secretome analysis of Ganoderma lucidum cultivated in sugarcane bagasse. J Proteomics 2012; 77:298-309. [DOI: 10.1016/j.jprot.2012.09.004] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2012] [Revised: 08/31/2012] [Accepted: 09/08/2012] [Indexed: 10/27/2022]
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23
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Furtado GP, Ribeiro LF, Lourenzoni MR, Ward RJ. A designed bifunctional laccase/ -1,3-1,4-glucanase enzyme shows synergistic sugar release from milled sugarcane bagasse. Protein Eng Des Sel 2012; 26:15-23. [DOI: 10.1093/protein/gzs057] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
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Jagtap SS, Dhiman SS, Jeya M, Kang YC, Choi JH, Lee JK. Saccharification of poplar biomass by using lignocellulases from Pholiota adiposa. BIORESOURCE TECHNOLOGY 2012; 120:264-272. [PMID: 22831905 DOI: 10.1016/j.biortech.2012.06.002] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2012] [Revised: 05/31/2012] [Accepted: 06/02/2012] [Indexed: 06/01/2023]
Abstract
A basidiomycetous fungus, identified as Pholiota adiposa SKU0714 on the basis of morphological and phylogenetic analyses, was found to secrete efficient lignocellulose degrading enzymes. The strain showed maximum endoglucanase, cellobiohydrolase and β-glucosidase activities of 26, 32 and 39 U/mL, respectively and also secreted xylanase, laccase, mannanase, and lignin peroxidase with activities of 1680, 0.12, 65 and 0.41 U/mL, respectively when grown with rice straw as a carbon source. Among the various plant biomasses tested for saccharification, poplar biomass produced the maximum amount of reducing sugar. Response surface methodology was used to optimize hydrolysis parameters. A maximum saccharification yield of 83.4% (667 mg/g-substrate), the highest yield from any plant biomass, was obtained with Populus biomass after 24h of hydrolysis. P. adiposa was proven to be a good choice for the production of reducing sugars from cellulosic biomass.
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Affiliation(s)
- Sujit Sadashiv Jagtap
- Department of Chemical Engineering, Konkuk University, Seoul 143-701, Republic of Korea
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Exploring the natural fungal biodiversity of tropical and temperate forests toward improvement of biomass conversion. Appl Environ Microbiol 2012; 78:6483-90. [PMID: 22773628 DOI: 10.1128/aem.01651-12] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
In this study, natural fungal diversity in wood-decaying species was explored for biomass deconstruction. In 2007 and 2008, fungal isolates were collected in temperate forests mainly from metropolitan France and in tropical forests mainly from French Guiana. We recovered and identified 74 monomorph cultures using morphological and molecular identification tools. Following production of fungal secretomes under inductive conditions, we evaluated the capacity of these fungal strains to potentiate a commercial Trichoderma reesei cellulase cocktail for the release of soluble sugars from biomass. The secretome of 19 isolates led to an improvement in biomass conversion of at least 23%. Of the isolates, the Trametes gibbosa BRFM 952 (Banque de Ressources Fongiques de Marseille) secretome performed best, with 60% improved conversion, a feature that was not universal to the Trametes and related genera. Enzymatic characterization of the T. gibbosa BRFM 952 secretome revealed an unexpected high activity on crystalline cellulose, higher than that of the T. reesei cellulase cocktail. This report highlights the interest in a systematic high-throughput assessment of collected fungal biodiversity to improve the enzymatic conversion of lignocellulosic biomass. It enabled the unbiased identification of new fungal strains issued from biodiversity with high biotechnological potential.
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Lomascolo A, Uzan-Boukhris E, Sigoillot JC, Fine F. Rapeseed and sunflower meal: a review on biotechnology status and challenges. Appl Microbiol Biotechnol 2012; 95:1105-14. [DOI: 10.1007/s00253-012-4250-6] [Citation(s) in RCA: 95] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2012] [Revised: 06/13/2012] [Accepted: 06/14/2012] [Indexed: 10/28/2022]
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