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Fang H, Li Y, Song Y, Yu L, Song X, Zhao C. Consolidated bioprocessing of lignocellulosic wastes in Northwest China for D-glucaric acid production by an artificial microbial consortium. Bioprocess Biosyst Eng 2024; 47:1999-2010. [PMID: 39158597 DOI: 10.1007/s00449-024-03081-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2024] [Accepted: 08/12/2024] [Indexed: 08/20/2024]
Abstract
D-glucaric acid is a platform chemical of great importance and the consolidated bioprocessing (CBP) of lignocellulose by the microbial consortium of Trichoderma reesei C10 and Saccharomyces cerevisiae LGA-1C3S2 features prospects in biomanufacturing it. Here we compared some representative lignocelluloses in Northwest China including corn stover, wheat straw and switchgrass, and the leading pretreatments including steam explosion, subcritical water pretreatment, sodium hydroxide pretreatment, aqueous ammonia pretreatment, lime pretreatment, and diluted sulfuric acid pretreatment. It was found that sodium hydroxide pretreated switchgrass (SHPSG) was the best substrate for D-glucaric acid production, resulting in the highest D-glucaric acid titers, 11.69 ± 0.73 g/L in shake flask and 15.71 ± 0.80 g/L in 10L airlift fermenter, respectively. To the best of our knowledge, this is the highest D-glucaric acid production titer from lignocellulosic biomass. This work offers a paradigm of producing low-cost D-glucaric acid for low-carbon polyethylene 2,5-furandicarboxylate (PEF) and a reference on developing biorefinery in Northwest China.
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Affiliation(s)
- Hao Fang
- Key Laboratory of Biomass Chemical Engineering of Ministry of Education, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China.
- ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou, 311215, Zhejiang, China.
| | - Yuchen Li
- Department of Health Technology, Technical University of Denmark, 2800, Kgs. Lyngby, Denmark
| | - Yuqi Song
- Faculty of Engineering, Monash University, 14 Alliance Lane, Clayton Victoria 3800, Clayton, Australia
| | - Liang Yu
- Department of Biological Systems Engineering, Washington State University, Pullman, Washington, 99164, USA
| | - Xiangyang Song
- College of Chemical Engineering, Nanjing Forestry University, No.159 Longpan Road, Xuanwu District, Nanjing, 210037, Jiangsu, China
- Key Laboratory of Forestry Genetics & Biotechnology of Chinese Ministry of Education, Nanjing Forestry University, No.159 Longpan Road, Nanjing, 210037, Jiangsu, China
| | - Chen Zhao
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling District, Xianyang, 712100, Shaanxi, China.
- Biomass Energy Center for Arid and Semi-Arid Lands, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China.
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de Assis MA, da Silva JJB, de Carvalho LM, Parreiras LS, Cairo JPLF, Marone MP, Gonçalves TA, Silva DS, Dantzger M, de Figueiredo FL, Carazzolle MF, Pereira GAG, Damasio A. A Multiomics Perspective on Plant Cell Wall-Degrading Enzyme Production: Insights from the Unexploited Fungus Trichoderma erinaceum. J Fungi (Basel) 2024; 10:407. [PMID: 38921393 PMCID: PMC11205114 DOI: 10.3390/jof10060407] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 05/24/2024] [Accepted: 05/28/2024] [Indexed: 06/27/2024] Open
Abstract
Trichoderma erinaceum is a filamentous fungus that was isolated from decaying sugarcane straw at a Brazilian ethanol biorefinery. This fungus shows potential as a source of plant cell wall-degrading enzymes (PCWDEs). In this study, we conducted a comprehensive multiomics investigation of T. erinaceum to gain insights into its enzymatic capabilities and genetic makeup. Firstly, we performed genome sequencing and assembly, which resulted in the identification of 10,942 genes in the T. erinaceum genome. We then conducted transcriptomics and secretome analyses to map the gene expression patterns and identify the enzymes produced by T. erinaceum in the presence of different substrates such as glucose, microcrystalline cellulose, pretreated sugarcane straw, and pretreated energy cane bagasse. Our analyses revealed that T. erinaceum highly expresses genes directly related to lignocellulose degradation when grown on pretreated energy cane and sugarcane substrates. Furthermore, our secretome analysis identified 35 carbohydrate-active enzymes, primarily PCWDEs. To further explore the enzymatic capabilities of T. erinaceum, we selected a β-glucosidase from the secretome data for recombinant production in a fungal strain. The recombinant enzyme demonstrated superior performance in degrading cellobiose and laminaribiose compared to a well-known enzyme derived from Trichoderma reesei. Overall, this comprehensive study provides valuable insights into both the genetic patterns of T. erinaceum and its potential for lignocellulose degradation and enzyme production. The obtained genomic data can serve as an important resource for future genetic engineering efforts aimed at optimizing enzyme production from this fungus.
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Affiliation(s)
- Michelle A. de Assis
- Laboratory of Enzymology and Molecular Biology (LEBIMO), Department of Biochemistry and Tissue Biology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (M.A.d.A.); (J.P.L.F.C.); (T.A.G.); (F.L.d.F.)
| | - Jovanderson J. B. da Silva
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - Lucas M. de Carvalho
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - Lucas S. Parreiras
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - João Paulo L. F. Cairo
- Laboratory of Enzymology and Molecular Biology (LEBIMO), Department of Biochemistry and Tissue Biology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (M.A.d.A.); (J.P.L.F.C.); (T.A.G.); (F.L.d.F.)
- York Structural Biology Laboratory (YSBL), Department of Chemistry, University of York, York YO10 5DD, UK
| | - Marina P. Marone
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - Thiago A. Gonçalves
- Laboratory of Enzymology and Molecular Biology (LEBIMO), Department of Biochemistry and Tissue Biology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (M.A.d.A.); (J.P.L.F.C.); (T.A.G.); (F.L.d.F.)
| | - Desireé S. Silva
- SENAI Institute for Biomass Innovation, Três Lagoas 79640-250, Brazil;
| | - Miriam Dantzger
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - Fernanda L. de Figueiredo
- Laboratory of Enzymology and Molecular Biology (LEBIMO), Department of Biochemistry and Tissue Biology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (M.A.d.A.); (J.P.L.F.C.); (T.A.G.); (F.L.d.F.)
| | - Marcelo F. Carazzolle
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - Gonçalo A. G. Pereira
- Genomics and BioEnergy Laboratory (LGE), Department of Genetics, Evolution, Microbiology and Immunology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (J.J.B.d.S.); (L.M.d.C.); (L.S.P.); (M.D.); (M.F.C.); (G.A.G.P.)
| | - André Damasio
- Laboratory of Enzymology and Molecular Biology (LEBIMO), Department of Biochemistry and Tissue Biology, Universidade Estadual de Campinas (UNICAMP), Campinas 13083-862, São Paulo, Brazil; (M.A.d.A.); (J.P.L.F.C.); (T.A.G.); (F.L.d.F.)
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Fang H, Deng Y, Pan Y, Li C, Yu L. Distributive and collaborative push‐and‐pull in an artificial microbial consortium for improved consolidated bioprocessing. AIChE J 2022. [DOI: 10.1002/aic.17844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Hao Fang
- ZJU‐Hangzhou Global Scientific and Technological Innovation Center, No.733 Jianshe San Road Hangzhou Zhejiang China
- College of Life Sciences, Northwest A&F University, No.22 Xinong Road Yangling Shaanxi China
- College of Chemical and Biological Engineering, Zhejiang University, No.38 Zheda Road Hangzhou Zhejiang China
| | - Yuntao Deng
- College of Life Sciences, Northwest A&F University, No.22 Xinong Road Yangling Shaanxi China
| | - Yingjie Pan
- ZJU‐Hangzhou Global Scientific and Technological Innovation Center, No.733 Jianshe San Road Hangzhou Zhejiang China
| | - Chaofeng Li
- College of Life Sciences, Northwest A&F University, No.22 Xinong Road Yangling Shaanxi China
| | - Liang Yu
- Department of Biological Systems Engineering Washington State University Pullman Washington United States of America
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Srivastava N, Srivastava M, Alhazmi A, Kausar T, Haque S, Singh R, Ramteke PW, Mishra PK, Tuohy M, Leitgeb M, Gupta VK. Technological advances for improving fungal cellulase production from fruit wastes for bioenergy application: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 287:117370. [PMID: 34020262 DOI: 10.1016/j.envpol.2021.117370] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 04/12/2021] [Accepted: 05/08/2021] [Indexed: 06/12/2023]
Abstract
Fruit wastes can be imperative to elevate economical biomass to biofuels production process at pilot scale. Because of the renewable features, huge availability, having low lignin content organic nature and low cost; these wastes can be of much interest for cellulase enzyme production. This review provides recent advances on the fungal cellulase production using fruit wastes as a potential substrate. Also, the availability of fruit wastes, generation and processing data and their potential applications for cellulase enzyme production have been discussed. Several aspects, including cellulase and its function, solid-state fermentation, process parameters, microbial source, and the application of enzyme in biofuels industries have also been discussed. Further, emphasis has been made on various bottlenecks and feasible approaches such as use of nanomaterials, co-culture, molecular techniques, genetic engineering, and cost economy analysis to develop a low-cost based comprehensive technology for viable production of cellulase and its application in biofuels production technology.
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Affiliation(s)
- Neha Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi, 221005, India.
| | - Manish Srivastava
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi, 221005, India
| | - Alaa Alhazmi
- Medical Laboratory Technology Department, Jazan University, Jazan, Saudi Arabia; SMIRES for Consultation in Specialized Medical Laboratories, Jazan University, Jazan, Saudi Arabia
| | - Tahreem Kausar
- Department of Food Technology, School of Interdisciplinary Science and Technology, Jamia Hamdard, Hamdard Nagar, New Delhi, 110062, India
| | - Shafiul Haque
- Research and Scientific Studies Unit, College of Nursing and Allied Health Sciences, Jazan University, Jazan, 45142, Saudi Arabia
| | - Rajeev Singh
- Department of Environmental Studies, Satyawati College, University of Delhi, Delhi, 110052, India
| | - Pramod W Ramteke
- Department of Biological Sciences, Sam Higginbottom University of Agriculture Technology & Sciences (Formerly Allahabad Agricultural Institute) Allahabad, 221007, Uttar Pradesh, India; Department of Life Sciences, Mandsaur University, Mandsaur, 458001, India
| | - Pradeep Kumar Mishra
- Department of Chemical Engineering and Technology, Indian Institute of Technology (BHU), Varanasi, 221005, India
| | - Maria Tuohy
- Molecular Glycobiotechnology Group, Department of Biochemistry, National University of Ireland Galway, Galway, Ireland
| | - Maja Leitgeb
- Faculty of Chemistry and Chemical Engineering, University of Maribor, Smetanovaulica 17, 2000, Maribor, Slovenija
| | - Vijai Kumar Gupta
- Biorefining and Advanced Materials Research Center, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, UK; Center for Safe and Improved Food, Scotland's Rural College (SRUC), Kings Buildings, West Mains Road, Edinburgh, EH9 3JG, UK.
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Fang H, Li C, Zhao J, Zhao C. Biotechnological Advances and Trends in Engineering Trichoderma reesei towards Cellulase Hyperproducer. BIOTECHNOL BIOPROC E 2021. [DOI: 10.1007/s12257-020-0243-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Ye Z, Jiang B, Gao D, Ping W, Ge J. Bacillus spp. increase the Paracin 1.7 titer of L. paracasei HD1.7 in sauerkraut juice: Emphasis on the influence of inoculation conditions on the symbiotic relationship. Lebensm Wiss Technol 2021. [DOI: 10.1016/j.lwt.2021.111443] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
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Li C, Lin X, Ling X, Li S, Fang H. Consolidated bioprocessing of lignocellulose for production of glucaric acid by an artificial microbial consortium. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:110. [PMID: 33931115 PMCID: PMC8086319 DOI: 10.1186/s13068-021-01961-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/18/2020] [Accepted: 04/21/2021] [Indexed: 06/12/2023]
Abstract
BACKGROUND The biomanufacturing of D-glucaric acid has attracted increasing interest because it is one of the top value-added chemicals produced from biomass. Saccharomyces cerevisiae is regarded as an excellent host for D-glucaric acid production. RESULTS The opi1 gene was knocked out because of its negative regulation on myo-inositol synthesis, which is the limiting step of D-glucaric acid production by S. cerevisiae. We then constructed the biosynthesis pathway of D-glucaric acid in S. cerevisiae INVSc1 opi1Δ and obtained two engineered strains, LGA-1 and LGA-C, producing record-breaking titers of D-glucaric acid: 9.53 ± 0.46 g/L and 11.21 ± 0.63 g/L D-glucaric acid from 30 g/L glucose and 10.8 g/L myo-inositol in fed-batch fermentation mode, respectively. However, LGA-1 was preferable because of its genetic stability and its superior performance in practical applications. There have been no reports on D-glucaric acid production from lignocellulose. Therefore, the biorefinery processes, including separated hydrolysis and fermentation (SHF), simultaneous saccharification and fermentation (SSF) and consolidated bioprocessing (CBP) were investigated and compared. CBP using an artificial microbial consortium composed of Trichoderma reesei (T. reesei) Rut-C30 and S. cerevisiae LGA-1 was found to have relatively high D-glucaric acid titers and yields after 7 d of fermentation, 0.54 ± 0.12 g/L D-glucaric acid from 15 g/L Avicel and 0.45 ± 0.06 g/L D-glucaric acid from 15 g/L steam-exploded corn stover (SECS), respectively. In an attempt to design the microbial consortium for more efficient CBP, the team consisting of T. reesei Rut-C30 and S. cerevisiae LGA-1 was found to be the best, with excellent work distribution and collaboration. CONCLUSIONS Two engineered S. cerevisiae strains, LGA-1 and LGA-C, with high titers of D-glucaric acid were obtained. This indicated that S. cerevisiae INVSc1 is an excellent host for D-glucaric acid production. Lignocellulose is a preferable substrate over myo-inositol. SHF, SSF, and CBP were studied, and CBP using an artificial microbial consortium of T. reesei Rut-C30 and S. cerevisiae LGA-1 was found to be promising because of its relatively high titer and yield. T. reesei Rut-C30 and S. cerevisiae LGA-1were proven to be the best teammates for CBP. Further work should be done to improve the efficiency of this microbial consortium for D-glucaric acid production from lignocellulose.
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Affiliation(s)
- Chaofeng Li
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China
- Biomass Energy Center for Arid and Semi-Arid Lands, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China
| | - Xiaofeng Lin
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China
| | - Xing Ling
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China
| | - Shuo Li
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China
| | - Hao Fang
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China.
- Biomass Energy Center for Arid and Semi-Arid Lands, Northwest A&F University, 22 Xinong Road, Yangling, Xianyang, 712100, Shaanxi, China.
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Sperandio GB, Filho EXF. An overview of Trichoderma reesei co-cultures for the production of lignocellulolytic enzymes. Appl Microbiol Biotechnol 2021; 105:3019-3025. [PMID: 33825000 DOI: 10.1007/s00253-021-11261-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 03/19/2021] [Accepted: 03/30/2021] [Indexed: 12/01/2022]
Abstract
Biorefineries are core facilities for implementing a sustainable circular bioeconomy. These facilities rely on microbial enzymes to hydrolyze lignocellulosic substrates into fermentable sugars. Fungal co-cultures mimic the process of natural biodegradation and have been shown to increase certain enzyme activities. Trichoderma reesei and its many mutant strains are major cellulase producers and are heavily utilized as a source of carbohydrate-active enzymes. Several reports have demonstrated that T. reesei co-cultures present higher enzyme activities compared with its monocultures, especially in the context of β-glucosidase activity. The performance of T. reesei during co-culturing has been assessed with several fungal partners, including Aspergillus niger, one of the most recurrent partners. Various aspects of co-cultivation still need further investigation, especially regarding the molecular interactions between fungi in controlled environments and the optimization of the resulting enzyme cocktails. Since plenty of genetic and physiological data on T. reesei is available, the species is an outstanding candidate for future co-culture investigations. Co-cultures are still a developing field for industrial enzyme production, and many aspects of the technique need further improvement before real applications. KEY POINTS: • T. reesei co-cultures are an alternative for producing lignocellulolytic enzymes. • Several reports suggest an increase in certain enzyme activities in co-cultures. • More in-depth investigations of co-cultures are necessary for advancing this field.
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Huang LF, Liu YK, Su SC, Lai CC, Wu CR, Chao TJ, Yang YH. Genetic engineering of transitory starch accumulation by knockdown of OsSEX4 in rice plants for enhanced bioethanol production. Biotechnol Bioeng 2020; 117:933-944. [PMID: 31889302 DOI: 10.1002/bit.27262] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 12/19/2019] [Accepted: 12/23/2019] [Indexed: 11/07/2022]
Abstract
Rice straw, a common agricultural waste, is used as a potential feedstock for bioethanol production. Currently, bioethanol is made mostly from the microbial fermentation of starch-containing raw materials. Therefore, genetically engineered starch-excess rice straw through interference of starch degradation as a potential strategy to enhance bioethanol production was evaluated in this study. Arabidopsis Starch Excess 4 (SEX4) encodes a chloroplast-localized glucan phosphatase and plays a role in transitory starch degradation. Despite the identification of a SEX4 homolog in rice, OsSEX4, its biological function remains uncertain. Ectopic expression of OsSEX4 complementary DNA complemented the leaf starch-excess phenotype of the Arabidopsis sex4-4 mutant. OsSEX4-knockdown transgenic rice plants were generated using the RNA interference approach. Starch accumulation was higher in OsSEX4-knockdown suspension-cultured cells, leaves, and rice straw compared with the wild type, suggesting that OsSEX4 plays an important role in degradation of transitory starch. The OsSEX4-knockdown rice plants showed normal plant growth and no yield penalty. Starch-excess OsSEX4-knockdown rice straw used as feedstock for fermentation resulted in improved bioethanol yield, with a 50% increase in ethanol production in a vertical mass-flow type bioreactor, compared with that of the wild-type straw.
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Affiliation(s)
- Li-Fen Huang
- Graduate School of Biotechnology and Bioengineering, Yuan Ze University, Taoyuan, Taiwan
| | - Yu-Kuo Liu
- Department of Chemical and Materials Bioengineering, Chang Gung University, Taoyuan, Taiwan
| | - Sung-Chieh Su
- Graduate School of Biotechnology and Bioengineering, Yuan Ze University, Taoyuan, Taiwan
| | - Chih-Chang Lai
- Graduate School of Biotechnology and Bioengineering, Yuan Ze University, Taoyuan, Taiwan
| | - Ching-Rong Wu
- Graduate School of Biotechnology and Bioengineering, Yuan Ze University, Taoyuan, Taiwan
| | - Tai-Jang Chao
- Graduate School of Biotechnology and Bioengineering, Yuan Ze University, Taoyuan, Taiwan
| | - Yung-Hsing Yang
- Department of Chemical and Materials Bioengineering, Chang Gung University, Taoyuan, Taiwan
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Simultaneous enhancement of the beta-exo synergism and exo-exo synergism in Trichoderma reesei cellulase to increase the cellulose degrading capability. Microb Cell Fact 2019; 18:9. [PMID: 30657063 PMCID: PMC6337788 DOI: 10.1186/s12934-019-1060-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2018] [Accepted: 01/10/2019] [Indexed: 11/18/2022] Open
Abstract
Background Cellulase is the one of the largest contributors to the high production costs of the lignocellulose-based biorefineries. As the most widely used cellulase producer, Trichoderma reesei has two weaknesses, deficiencies in β-glucosidase and cellobiohydrolase II. This work aimed at solving this problem by simultaneous enhancement of the beta–exo synergism and exo–exo synergism in T. reesei cellulase to increase the cellulose degrading capability, i.e. enhanced co-expression of the β-glucosidase gene the cellobiohydrolase II gene of T. reesei. Results Enhanced co-expression of the β-glucosidase gene and the cellobiohydrolase II gene in T. reesei using the strong promoter Pcbh1 was found successful in overcoming the two weaknesses. Filter paper activities of T. reesei cellulase were greatly elevated, which were 7.21 ± 0.45 (E7, Aabgl1 and Trcbh2) and 7.69 ± 0.42 (F6, Anbgl1 and Trcbh2) FPIU/mL. They were much higher than that of the parental strain Rut-C30, 2.45 ± 0.36 FPIU/mL. Enzymatic hydrolysis yields were also improved, from 67.22 ± 1.61% by Rut-C30 cellulase to 87.98 ± 0.65% by E7 cellulase and 86.50 ± 1.01% by F6 cellulase. The substrate loading for 1 g glucose release from SECS were decreased, from 2.9637 g SECS using Rut-C30 cellulase to 2.0291 g SECS using E7 cellulase and 2.0573 g SECS using F6 cellulase. As a result, the efficiency of the process from SECS to glucose was substantially improved. Conclusions Enhanced co-expression of the β-glucosidase gene and the cellobiohydrolase II gene in T. reesei using the strong promoter Pcbh1 in T. reesei was proven triumphal in the simultaneous enhancement of the beta–exo synergism and exo–exo synergism in T. reesei cellulase. This strategy also improved the cellulase production, enzymatic hydrolysis yield and the efficiency of the process from SECS to glucose in the context of on-site cellulase production. This work is a commendable attempt in the cellulase composition optimization at the transcriptional level.
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Pamidipati S, Ahmed A. Cellulase stimulation during biodegradation of lignocellulosic residues at increased biomass loading. BIOCATAL BIOTRANSFOR 2018. [DOI: 10.1080/10242422.2018.1508284] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- Sirisha Pamidipati
- Department of Chemical Engineering, Birla Institute of Technology and Science Pilani - Hyderabad campus, Jawahar Nagar, Shameerpet Mandal, Hyderabad, India
| | - Asma Ahmed
- Department of Chemical Engineering, Birla Institute of Technology and Science Pilani - Hyderabad campus, Jawahar Nagar, Shameerpet Mandal, Hyderabad, India
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Lopes A, Ferreira Filho E, Moreira L. An update on enzymatic cocktails for lignocellulose breakdown. J Appl Microbiol 2018; 125:632-645. [DOI: 10.1111/jam.13923] [Citation(s) in RCA: 93] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2017] [Revised: 03/20/2018] [Accepted: 05/14/2018] [Indexed: 12/01/2022]
Affiliation(s)
- A.M. Lopes
- Laboratory of Enzymology; Department of Cellular Biology; University of Brasília; Brasilia DF Brazil
| | - E.X. Ferreira Filho
- Laboratory of Enzymology; Department of Cellular Biology; University of Brasília; Brasilia DF Brazil
| | - L.R.S. Moreira
- Laboratory of Enzymology; Department of Cellular Biology; University of Brasília; Brasilia DF Brazil
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Rodrigues Mota T, Matias de Oliveira D, Marchiosi R, Ferrarese-Filho O, Dantas dos Santos W. Plant cell wall composition and enzymatic deconstruction. AIMS BIOENGINEERING 2018. [DOI: 10.3934/bioeng.2018.1.63] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
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Zhao C, Fang H, Chen S. Single cell oil production by Trichosporon cutaneum from steam-exploded corn stover and its upgradation for production of long-chain α,ω-dicarboxylic acids. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:202. [PMID: 28852423 PMCID: PMC5568358 DOI: 10.1186/s13068-017-0889-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2016] [Accepted: 08/16/2017] [Indexed: 06/07/2023]
Abstract
BACKGROUND Single cell oil (SCO) production from lignocelluloses by oleaginous microorganisms is still high in production cost, making the subsequent production of biofuels inviable economically in such an era of low oil prices. Therefore, how to upgrade the final products of lignocellulose-based bioprocess to more valuable ones is becoming a more and more important issue. RESULTS Differently sourced cellulases were compared in the enzymatic hydrolysis of the steam-exploded corn stover (SECS) and the cellulase from the mixed culture of Trichoderma reesei and Aspergillus niger was found to have the highest enzymatic hydrolysis yield 86.67 ± 4.06%. Three-stage enzymatic hydrolysis could greatly improve the efficiency of the enzymatic hydrolysis of SECS, achieving a yield of 74.24 ± 2.69% within 30 h. Different bioprocesses from SECS to SCO were compared and the bioprocess C with the three-stage enzymatic hydrolysis was the most efficient, producing 57.15 g dry cell biomass containing 31.80 g SCO from 327.63 g SECS. An efficient and comprehensive process from corn stover to long-chain α,ω-dicarboxylic acids (DCAs) was established by employing self-metathesis, capable of producing 6.02 g long-chain DCAs from 409.54 g corn stover and 6.02 g alkenes as byproducts. CONCLUSIONS On-site cellulase production by the mixed culture of T. reesei and A. niger is proven the most efficient in providing cellulase to the lignocellulose-based bioprocess. Three-stage enzymatic hydrolysis was found to have very good application value in SCO production by Trichosporon cutaneum from SECS. A whole process from corn stover to long-chain DCAs via a combination of biological and chemical approaches was successfully established and it is an enlightening example of the comprehensive utilization of agricultural wastes.
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Affiliation(s)
- Chen Zhao
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, 712100 Shaanxi China
| | - Hao Fang
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, 712100 Shaanxi China
- National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, 214122 Jiangsu China
| | - Shaolin Chen
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, 712100 Shaanxi China
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Direct Succinic Acid Production from Minimally Pretreated Biomass Using Sequential Solid-State and Slurry Fermentation with Mixed Fungal Cultures. FERMENTATION-BASEL 2017. [DOI: 10.3390/fermentation3030030] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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18
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Zhao C, Deng L, Fang H, Chen S. Microbial oil production byMortierella isabellinafrom corn stover under different pretreatments. RSC Adv 2017. [DOI: 10.1039/c7ra11900c] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Mixed culture ofTrichoderma reeseiandAspergillus nigerwas employed to accomplish on-site cellulase production where cellulases were applied directly to the enzymatic hydrolysis of pretreated corn stover.
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Affiliation(s)
- Chen Zhao
- College of Life Sciences
- Northwest A&F University
- Yangling 712100
- China
- Biomass Energy Center for Arid and Semi-arid Lands
| | - Lu Deng
- College of Life Sciences
- Northwest A&F University
- Yangling 712100
- China
- Biomass Energy Center for Arid and Semi-arid Lands
| | - Hao Fang
- College of Life Sciences
- Northwest A&F University
- Yangling 712100
- China
- Biomass Energy Center for Arid and Semi-arid Lands
| | - Shaolin Chen
- College of Life Sciences
- Northwest A&F University
- Yangling 712100
- China
- Biomass Energy Center for Arid and Semi-arid Lands
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Cations Optimization for Protein Enrichment in Rice Straw by Mixed Cultures of Neurospora crassa 14-8 and Candida utilis Using Response Surface Methodology. Appl Biochem Biotechnol 2016; 182:804-817. [DOI: 10.1007/s12010-016-2363-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2016] [Accepted: 12/06/2016] [Indexed: 12/26/2022]
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Fang H, Zhao C, Chen S. Single cell oil production by Mortierella isabellina from steam exploded corn stover degraded by three-stage enzymatic hydrolysis in the context of on-site enzyme production. BIORESOURCE TECHNOLOGY 2016; 216:988-95. [PMID: 27343451 DOI: 10.1016/j.biortech.2016.06.051] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Revised: 06/14/2016] [Accepted: 06/15/2016] [Indexed: 05/23/2023]
Abstract
Single cell oil (SCO), promising as alternative oil source, was produced from steam exploded corn stover (SECS) by Mortierella isabellina. Different bioprocesses from SECS to SCO were compared and the bioprocess C using the three-stage enzymatic hydrolysis was found to be the most efficient one. The bioprocess C used the lowest enzyme input 20FPIU cellulase/g glucan and the shortest time 222h, but produced 44.94g dry cell biomass and 25.77g lipid from 327.63g dry SECS. It had the highest lipid content 57.34%, and its productivities and yields were much higher than those of the bioprocess B and comparable to the bioprocess A, indicating that the three-stage enzymatic hydrolysis could greatly improve the efficiency of the bioprocess from high solid loading SECS to SCO by Mortierella isabellina. This work testified the application value of three-stage enzymatic hydrolysis in lignocellulose-based bioprocesses.
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Affiliation(s)
- Hao Fang
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi 712100, China; National Engineering Laboratory for Cereal Fermentation Technology, Jiangnan University, 1800 Lihu Avenue, Wuxi, Jiangsu 214122, China.
| | - Chen Zhao
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi 712100, China
| | - Shaolin Chen
- College of Life Sciences, Northwest A&F University, 22 Xinong Road, Yangling, Shaanxi 712100, China
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Enhancement of Cellulase and Xylanase Production Using pH-Shift and Dissolved Oxygen Control Strategy with Streptomyces griseorubens JSD-1. Appl Biochem Biotechnol 2015; 178:338-52. [PMID: 26458885 DOI: 10.1007/s12010-015-1875-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 09/25/2015] [Indexed: 01/07/2023]
Abstract
In this study, the production of cellulase and xylanase by Streptomyces griseorubens JSD-1 was improved by integrating the pH-shift and dissolved oxygen (DO)-constant control strategies. The pH-shift control strategy was carried out by analyzing the specific cell growth rate (μ) and specific enzyme formation rate (Q p) of S. griseorubens JSD-1. The pH was controlled at 8.0 during the first 48 h to maintain high cell growth, which then shifted to 7.5 after 48 h to improve the production of cellulase and xylanase. Using this method, the maximum activities of cellulase, xylanase, and filter paper enzyme (FPase) increased by 47.9, 29.5, and 113.6 %, respectively, compared to that obtained without pH control. On the basis of pH-shift control, the influence of DO concentrations on biomass and enzyme production was further investigated. The maximum production of cellulase, xylanase, and FPase reached 114.38 ± 0.96 U mL(-1), 330.57 ± 2.54 U mL(-1), and 40.11 ± 0.38 U mL(-1), which were about 1.6-fold, 0.6-fold, and 3.2-fold higher than that of neutral pH without DO control conditions. These results supplied a functional approach for improving cellulase and xylanase production.
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Jung DU, Yoo HY, Kim SB, Lee JH, Park C, Kim SW. Optimization of medium composition for enhanced cellulase production by mutant Penicillium brasilianum KUEB15 using statistical method. J IND ENG CHEM 2015. [DOI: 10.1016/j.jiec.2014.10.026] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Mondala AH. Direct fungal fermentation of lignocellulosic biomass into itaconic, fumaric, and malic acids: current and future prospects. ACTA ACUST UNITED AC 2015; 42:487-506. [DOI: 10.1007/s10295-014-1575-4] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Accepted: 12/20/2014] [Indexed: 01/06/2023]
Abstract
Abstract
Various economic and environmental sustainability concerns as well as consumer preference for bio-based products from natural sources have paved the way for the development and expansion of biorefining technologies. These involve the conversion of renewable biomass feedstock to fuels and chemicals using biological systems as alternatives to petroleum-based products. Filamentous fungi possess an expansive portfolio of products including the multifunctional organic acids itaconic, fumaric, and malic acids that have wide-ranging current applications and potentially addressable markets as platform chemicals. However, current bioprocessing technologies for the production of these compounds are mostly based on submerged fermentation, which necessitates physicochemical pretreatment and hydrolysis of lignocellulose biomass to soluble fermentable sugars in liquid media. This review will focus on current research work on fungal production of itaconic, fumaric, and malic acids and perspectives on the potential application of solid-state fungal cultivation techniques for the consolidated hydrolysis and organic acid fermentation of lignocellulosic biomass.
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Affiliation(s)
- Andro H Mondala
- grid.268187.2 0000000106721122 Department of Chemical and Paper Engineering Western Michigan University 4601 Campus Dr. 49008 Kalamazoo MI USA
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Tiwari R, Singh S, Nain PKS, Rana S, Sharma A, Pranaw K, Nain L. Harnessing the hydrolytic potential of phytopathogenic fungus Phoma exigua ITCC 2049 for saccharification of lignocellulosic biomass. BIORESOURCE TECHNOLOGY 2013; 150:228-34. [PMID: 24177155 DOI: 10.1016/j.biortech.2013.10.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2013] [Revised: 09/27/2013] [Accepted: 10/01/2013] [Indexed: 05/08/2023]
Abstract
Phytopathogenic fungi develop unique systems for fast invasion by producing hydrolases, which may be explored as a source of hydrolytic enzymes for biofuel research. The present work deals with evaluation of a potato pathogen Phoma exigua ITCC 2049 for its potential to produce cellulase and xylanase enzyme. Taguchi methodology was applied to reveal the influence and contribution of five important factors (carbon source, organic and inorganic nitrogen source, surfactant, and pH) on hydrolytic enzyme production by Phoma. Cultivation of fungus under optimized condition produced endoglucanase (37.00 IU/ml), FPase (1.13 IU/ml), β-glucosidase (2.67 IU/ml) and xylanase (24.92 IU/ml) within 8 days of submerged fermentation. Saccharification of biopretreated Parthenium and paddy straw with cocktail of Phoma secretome supplemented with commercial β-glucosidase resulted in the significantly higher reducing sugar yield (651.04-698.11 mg/gds). This study proves the potential of Phoma as an alternative source of enzymes for biomass saccharification.
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Affiliation(s)
- Rameshwar Tiwari
- Division of Microbiology, Indian Agricultural Research Institute, New Delhi 110 012, India
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