Promoting soil health in organically managed systems: a review

Cultivation of Melilotus officinalis as a source of bioactive compounds in association with soil recovery practices

Introduction

Melilotus officinalis is a Leguminosae with relevant applications in medicine and soil recovery. This study reports the application of Melilotus officinalis plants in soil recovery and as a source of bioactive compounds.

Methods

Plants were cultivated in semiarid soil under four different fertilizer treatments, urban waste compost at 10 t/ha and 20 t/ha, inorganic fertilizer and a control (no fertilizer). Agronomic properties of soil (pH, EC, soil respiration, C content, macro- and microelements) were analyzed before and after treatment. Also, germination, biomass, element contents, and physiological response were evaluated. Metabolite composition of plants was analyzed through Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS).

Results and discussion

Results showed a significant enhancement of the soil microbial activity in planted soils amended with compost, though there were no other clear effects on the soil physicochemical and chemical characteristics during the short experimental period. An improvement in M. officinalis germination and growth was observed in soils with compost amendment. Metabolite composition of plants was analyzed through Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS). Principal Component and Agglomerative Hierarchical Clustering models suggest that there is a clear separation of the metabolome of four groups of plants grown under different soil treatments. The five most important discriminative metabolites (annotated) were oleamide, palmitic acid, stearic acid, 3-hydroxy-cis-5-octenoylcarnitine, and 6-hydroxynon-7- enoylcarnitine. This study provides information on how the metabolome of Melilotus might be altered by fertilizer application in poor soil regions. These metabolome changes might have repercussions for the application of this plant in medicine and pharmacology. The results support the profitability of Melilotus officinalis cultivation for bioactive compounds production in association with soil recovery practices.

Metagenomic Analysis of Bacterial Community Structure and Dynamics of a Digestate and a More Stabilized Digestate-Derived Compost from Agricultural Waste

Recycling of different products and waste materials plays a crucial role in circular economy, where the anaerobic digestion (AD) constitutes an important pillar since it reuses nutrients in the form of organic fertilizers. Knowledge about the digestate and compost microbial community structure and its variations over time is important. The aim of the current study was to investigate the microbiome of a slurry cow digestate produced on a farm (ADG) and of a more stabilized digestate-derived compost (DdC) in order to ascertain their potential uses as organic amendments in agriculture. The results from this study, based on a partial fragment of 16S bacterial rRNA NGS sequencing, showed that there is a greater microbial diversity in the DdC originated from agricultural waste compared to the ADG. Overall, the existence of a higher microbial diversity in the DdC was confirmed by an elevated number (1115) of OTUs identified, compared with the ADG (494 OTUs identified). In the DdC, 74 bacterial orders and 125 families were identified, whereas 27 bacterial orders and 54 families were identified in the ADG. Shannon diversity and Chao1 richness indexes were higher in DdC samples compared to ADG ones (Shannon: 3.014 and 1.573, Chao1: 68 and 24.75; p < 0.001 in both cases). A possible association between the microbiome composition at different stages of composting process and the role that these microorganisms may have on the quality of the compost-like substrate and its future uses is also discussed.

Effect of Organic Amendments in Soil on Physiological and Biochemical Attributes of Vachellia nilotica and Dalbergia sissoo under Saline Stress

Vachellia nilotica (L.) P.J.H. Hurther & Mabb. and Dalbergia sissoo Roxb. are two of the most important multipurpose agroforestry tree species of the Indian sub-continent, but their growth in saline soils is greatly reduced. Recently, organic amendments have showed the potential to increase plant growth in salt-affected soils; however, the influence of using these amendments for growing the above-mentioned tree species under saline conditions is not yet quantified. Therefore, an experiment was devised to analyze the interactive effects of organic amendments in saline soils on the growth of V. nilotica and D. sissoo. Under controlled conditions, a pot experiment was conducted in sandy loam saline soils (EC = 20.5 dSm⁻¹). Organic amendments from four diverse sources: farmyard manure (FYM), poultry manure (PM), slurry (SL), and farmyard manure biochar (FYMB) were employed in this study. At the harvesting time, data regarding morphological, physiological, ionic, and biochemical parameters were obtained. The current study results indicated that both tree species reacted differently, but positively, to diverse applied amendments. The maximum increment in total above-ground biomass, total below-ground biomass, and shoot length for V. nilotica (163.8%, 116.3%, and 68.2%, respectively) was observed in FYM amended soils, while the maximum increment for D. sissoo (128%, 86%, and 107%, respectively) was observed in FYMB amended soils, as compared to control. Minimum plant growth of both species was observed in untreated soils (saline soils). Likewise, the maximum potassium ion and minimum sodium ion concentrations were present in the root and shoots of plants (both species) treated with FYMB. The use of organic amendments resulted in decreased concentrations of malondialdehyde and hydrogen peroxide, and increased concentrations of antioxidant enzymes such as SOD, POD, and CAT. Moreover, higher photosynthetic rates and stomatal conductance were observed in the plants grown in amended soils. The findings of this study can be used to include the above-mentioned high-value tree species for future afforestation programs under saline conditions.

How does partial substitution of chemical fertiliser with organic forms increase sustainability of agricultural production?

To ensure global food security, agriculture must increase productivity while reducing environmental impacts associated with chemical nitrogen (N) fertilisation. This necessitates towards more sustainable practices such as recycling organic waste to substitute chemical fertiliser N inputs. However, hitherto how such strategy controls the succession of microbial communities and their relationship with crop yields and environmental impacts have not been comprehensively investigated. We conducted a field experiment with vegetable production in China examining partial substitution (25-50%) of chemical fertiliser with organic forms (pig manure or municipal sludge compost) considering key sustainability metrics: productivity, soil health, environmental impacts and microbial communities. We demonstrate that partial organic substitution improved crop yields, prevented soil acidification and improved soil fertility. Treatments also reduced detrimental environmental impacts with lower N₂O emission, N leaching and runoff, likely due to reduced inorganic nitrogen surplus. Microbial communities, including key genes involved in the N cycle, were dynamic and time-dependent in response to partial organic substitution, and were also important in regulating crop yields and environmental impacts. Partial organic substitution increased bacterial diversity and the relative abundance of several specific microbial groups (e.g. Sphingomonadales, Myxococcales, Planctomycetes, and Rhizobiales) involved in N cycling. Additionally, partial organic substitution reduced the number of bacterial ammonia oxidizers and increased the number of denitrifiers, with the proportion of N₂O-reducers being more pronounced, suggesting a mechanism for reducing N₂O emissions. Comprehensive economic cost-benefit evaluation showed that partial organic substitution increased economic benefit per unit area by 37-46%, and reduced agricultural inputs and environmental impacts per unit product by 22-44%. Among them, 50% substitution of pig manure was the most profitable strategy. The study is crucial to policy-making as it highlights the potential advantages of shifting towards systems balancing chemical and organic fertilisers with economic benefits for farmers, reduced environmental damage and an efficient way for organic waste disposal.

Effects of 3-nitrooxypropanol manure fertilizer on soil health and hydraulic properties

Supplementing beef cattle with 3-nitrooxypropanol (3-NOP) decreases enteric methane production, but it is unknown if fertilizing soil with 3-NOP manure influences soil health. We measured soil health indicators 2 yr after manure application to a bromegrass (Bromus L.) and alfalfa (Medicago sativa L.) mixed crop. Treatments were: composted conventional manure (without supplements); stockpiled conventional manure; composted manure from cattle supplemented with 3-NOP; stockpiled 3-NOP manure; composted manure from cattle supplemented with 3-NOP and monensin (3-NOP+Mon), a supplement that improves digestion; stockpiled 3-NOP+Mon manure; inorganic fertilizer (150 kg N ha^-1 and 50 kg P ha^-1 ); and an unamended control. Select chemical (K⁺ , Mg²⁺ , Mn⁺ , Zn⁺ , pH, and Olsen-P), biological (soil organic matter, active C, respiration, and extractable protein), physical (wet aggregate stability, bulk density, total porosity, and macro-, meso-, and micro-porosity), and hydraulic (saturation, field capacity, wilting point, water holding capacity, and hydraulic conductivity) variables were measured. The inclusion of monensin decreased soil Zn⁺ concentrations by 70% in stockpiled 3-NOP+Mon compared with stockpiled conventional manure. Active C and protein in composted conventional manure were 37 and 92% higher compared with stockpiled manure, respectively, but did not vary between 3-NOP treatments. 3-Nitrooxypropanol did not significantly alter other soil health indicators. Our results suggest that composted and stockpiled 3-NOP manure can be used as a nutrient source for forage crops without requiring changes to current manure management because it has minimal influence on soil health.

The effect of organic farming on water reusability, sustainable ecosystem, and food toxicity

Water is a fundamental necessity for people's well-being and the ecosystem's sustainability; however, its toxicity due to agrochemicals usage for food production leads to the deterioration of water quality. The poor water quality diminishes its reusability, thus limiting efficient water usage. Organic farming is one of the best ways that does not only reduce the deterioration of water quality but also decrease food toxicity. In organic farming, the crop is grown with no/less chemical usage. Besides, organic farming maintains biodiversity and reduces the anthropogenic footprint on soil, air, water, wildlife, and especially on the farming communities. Fields that are organically managed continuously for years have fewer pest populations and were attributed to increased biodiversity and abundance of multi-trophic interactions as well as to changes in plant metabolites. Fewer insect pests (pathogen vectors), in turn, would result in fewer crop diseases and increase crop production. This review highlights that organic farming may play a critical role in the reduction of pests and pathogens, which eventually would reduce the need for chemical reagents to protect crops, improving yield quality and water reusability.

Evaluating the Untapped Potential of U.S. Conservation Investments to Improve Soil and Environmental Health

There is increasing enthusiasm around the concept of soil health, and as a result, new public and private initiatives are being developed to increase soil health-related practices on working lands in the United States. In addition, billions of U.S. public dollars are dedicated annually toward soil conservation programs, and yet, it is not well quantified how investment in conservation programs improve soil health and, more broadly, environmental health. The Environmental Quality Incentives Program (EQIP) is one of the major U.S. public conservation programs administered on privately managed lands for which public data are available. In this research, we developed a multi-dimensional classification system to evaluate over 300 EQIP practices to identify to what extent practices have the potential to improve different aspects of soil and environmental health. Using available descriptions and expert opinion, these practices were evaluated with a classification system based on the practice's potential to exhibit the following environmental health outcomes: (i) principles of soil health to reduce soil disturbance and increase agrobiodiversity; (ii) a transition to ecologically-based management to conserve soil, water, energy and biological resources; and (iii) adaptive strategy to confer agroecosystem resilience. Further, we analyzed nearly $7 billion U.S. dollars of financial assistance dedicated to these practices from 2009 through 2018 to explore the potential of these investments to generate environmental health outcomes. We identified nine practices that fit the highest level of potential environmental health outcomes in our classification systems. These included wetlands and agroforestry related practices, demonstrating that ecologically complex practices can provide the broadest benefits to environmental health. Practices with the greatest potential to improve environmental health in our classification system represent 2–27% of annual EQIP funding between 2009 and 2018. In fiscal year 2018, these practices represented between $13 and 121 million, which represented ~0.08% of total annual USDA expenditures. These classifications and the subsequent funding analysis provide evidence that there is tremendous untapped potential for conservation programs to confer greater environmental health in U.S. agriculture. This analysis provides a new framework for assessing conservation investments as a driver for transformative agricultural change.

Nematicidal Amendments and Soil Remediation

The intensification of agriculture has created concerns about soil degradation and toxicity of agricultural chemicals to non-target organisms. As a result, there is great urgency for discovering new ecofriendly tools for pest management and plant nutrition. Botanical matrices and their extracts and purified secondary metabolites have received much research interest, but time-consuming registration issues have slowed their adoption. In contrast, cultural practices such as use of plant matrices as soil amendments could be immediately used as plant protectants or organic fertilizers. Herein, we focus on some types of soil amendments of botanical origin and their utilization for nematicidal activity and enhancement of plant nutrition. The mode of action is discussed in terms of parasite control as well as plant growth stimulation.