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Vinothini K, Nakkeeran S, Saranya N, Jothi P, Prabu G, Pavitra K, Afzal M. Metagenomic profiling of tomato rhizosphere delineates the diverse nature of uncultured microbes as influenced by Bacillus velezensis VB7 and Trichoderma koningiopsis TK towards the suppression of root-knot nematode under field conditions. 3 Biotech 2024; 14:2. [PMID: 38058363 PMCID: PMC10695903 DOI: 10.1007/s13205-023-03851-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Accepted: 11/08/2023] [Indexed: 12/08/2023] Open
Abstract
The plant-parasitic Root Knot Nematodes (Meloidogyne spp.,) play a pivotal role to devastate vegetable crops across the globe. Considering the significance of plant-microbe interaction in the suppression of Root Knot Nematode, we investigated the diversity of microbiome associated with bioagents-treated and nematode-infected rhizosphere soil samples through metagenomics approach. The wide variety of organisms spread across different ecosystems showed the highest average abundance within each taxonomic level. In the rhizosphere, Proteobacteria, Firmicutes, and Actinobacteria were the dominant bacterial taxa, while Ascomycota, Basidiomycota, and Mucoromycota were prevalent among the fungal taxa. Regardless of the specific treatments, bacterial genera like Bacillus, Sphingomonas, and Pseudomonas were consistently found in high abundance. Shannon diversity index vividly ensured that, bacterial communities were maximum in B. velezensis VB7-treated soil (1.4-2.4), followed by Root Knot Nematode-associated soils (1.3-2.2), whereas richness was higher with Trichoderma konigiopsis TK drenched soils (1.3-2.0). The predominant occurrence of fungal genera such as Aspergillus Epicoccum, Choanephora, Alternaria and Thanatephorus habituate rhizosphere soils. Shannon index expressed the abundant richness of fungal species in treated samples (1.04-0.90). Further, refraction and species diversity curve also depicted a significant increase with maximum diversity of fungal species in B. velezensis VB7-treated soil than T. koningiopsis and nematode-infested soil. In field trial, bioagents-treated tomato plant (60% reduction of Meloidogyne incognita infection) had reduced gall index along with enhanced plant growth and increased fruit yield in comparison with the untreated plant. Hence, B. velezensis VB7 and T. koingiopsis can be well explored as an antinemic bioagents against RKN. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-023-03851-1.
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Affiliation(s)
- K. Vinothini
- Department of Plant Pathology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu 641 003 India
| | - S. Nakkeeran
- Department of Plant Pathology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu 641 003 India
| | - N. Saranya
- Department of Plant Molecular Biology and Bioinformatics, Centre for Plant Molecular Biology and Biotechnology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu 641 003 India
| | - P. Jothi
- Department of Nematology, Centre for Plant Protection Studies, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu 641 003 India
| | - G. Prabu
- Director, Syngenome (OPC) Private Limited, Coimbatore, Tamil Nadu 641 003 India
| | - K. Pavitra
- Department of Plant Molecular Biology and Bioinformatics, Centre for Plant Molecular Biology and Biotechnology, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu 641 003 India
| | - Mohd Afzal
- Department of Chemistry, College of Science, King Saud University, 11451 Riyadh, Saudi Arabia
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Khan A, Haris M, Hussain T, Khan AA, Laasli SE, Lahlali R, Mokrini F. Counter-attack of biocontrol agents: Environmentally benign Approaches against Root-knot nematodes ( Meloidogyne spp.) on Agricultural crops. Heliyon 2023; 9:e21653. [PMID: 37954375 PMCID: PMC10632526 DOI: 10.1016/j.heliyon.2023.e21653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Revised: 09/21/2023] [Accepted: 10/25/2023] [Indexed: 11/14/2023] Open
Abstract
Root-knot nematodes (Meloidogyne spp.) are obligate sedentary endoparasites, considered severe crop-damaging taxa among all plant-parasitic nematodes globally. Their attacks through parasitic proteins alter the physiology and machinery of the host cells to favour parasitism and reduction in crop yield. Currently, the use of excessive pesticides as a fast remedy to manage this pest is hazardous for both the environment and humans. Keeping this view in mind, there is an urgent need for developing efficient eco-friendly strategies. Bio-control as an eco-friendly is considered the best approach to manage nematodes without disturbing non-target microbes. In bio-control, living agents such as fungi and bacteria are the natural enemies of nematodes and the best substitute for pesticides. Fungi, including nematode-trapping fungi, can sense host signals and produce special trapping devices viz., constricting rings and adhesive knobs/loops, to capture nematodes and kill them. Whereas, endo-parasitic fungi kill nematodes by enzymatic secretions and spore adhesion through their hyphae. Bacteria can also control nematodes by producing antibiotic compounds, competing for nutrients and rhizosphere, production of hydrolytic enzymes viz., chitinases, proteases, lipases, and induction of systemic resistance (ISR) in host plants. Scientists throughout the world are trying to evolve environmentally benign methods that sustain agricultural production and keep nematodes below a threshold level. Whatever methods evolve, in the future the focus should be on important aspects like green approaches for managing nematodes without disturbing human health and the environment.
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Affiliation(s)
- Amir Khan
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, UP, India
| | - Mohammad Haris
- Section of Environmental Botany, Department of Botany, Aligarh Muslim University, Aligarh, 202002, UP, India
| | - Touseef Hussain
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, UP, India
- Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Abrar Ahmad Khan
- Plant Pathology and Nematology Section, Department of Botany, Aligarh Muslim University, Aligarh, 202002, UP, India
| | - Salah-Eddine Laasli
- Phytopathology Unit, Department of Plant Protection, Ecole Nationale d’Agriculture de Meknès, Km10, Rte Haj Kaddour, BP S/40, Meknès, 50001, Morocco
| | - Rachid Lahlali
- Phytopathology Unit, Department of Plant Protection, Ecole Nationale d’Agriculture de Meknès, Km10, Rte Haj Kaddour, BP S/40, Meknès, 50001, Morocco
- Plant Pathology Laboratory, AgroBioSciences, College of Sustainable Agriculture and Environmental Sciences, Mohammed VI Polytechnic University Lot 660, Hay Moulay Rachid Ben Guerir, 43150, Morocco
| | - Fouad Mokrini
- Phytopathology Unit, Department of Plant Protection, Ecole Nationale d’Agriculture de Meknès, Km10, Rte Haj Kaddour, BP S/40, Meknès, 50001, Morocco
- Biotechnology Unit, Regional Center of Agricultural Research, INRA-Morocco, Rabat, Morocco
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Forghani F, Hajihassani A. Recent Advances in the Development of Environmentally Benign Treatments to Control Root-Knot Nematodes. FRONTIERS IN PLANT SCIENCE 2020; 11:1125. [PMID: 32793271 PMCID: PMC7387703 DOI: 10.3389/fpls.2020.01125] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Accepted: 07/08/2020] [Indexed: 05/17/2023]
Abstract
Root-knot nematodes (RKNs), Meloidogyne spp., are sedentary endoparasites that negatively affect almost every crop in the world. Current management practices are not enough to completely control RKN. Application of certain chemicals is also being further limited in recent years. It is therefore crucial to develop additional control strategies through the application of environmentally benign methods. There has been much research performed around the world on the topic, leading to useful outcomes and interesting findings capable of improving farmers' income. It is important to have dependable resources gathering the data produced to facilitate future research. This review discusses recent findings on the application of environmentally benign treatments to control RKN between 2015 and April 2020. A variety of biological control strategies, natural compounds, soil amendments and other emerging strategies have been included, among which, many showed promising results in RKN control in vitro and/or in vivo. Development of these methods continues to be an area of active research, and new information on their efficacy will continuously become available. We have discussed some of the control mechanisms involved and suggestions were given on maximizing the outcome of the future efforts.
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