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Trofimchuk E, Ostrikova V, Ivanova O, Moskvina M, Plutalova A, Grokhovskaya T, Shchelushkina A, Efimov A, Chernikova E, Zhang S, Mironov V. Degradation of Structurally Modified Polylactide under the Controlled Composting of Food Waste. Polymers (Basel) 2023; 15:4017. [PMID: 37836066 PMCID: PMC10575269 DOI: 10.3390/polym15194017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 09/29/2023] [Accepted: 10/02/2023] [Indexed: 10/15/2023] Open
Abstract
The degradation of polylactide (PLA) films of different structures under conditions of controlled composting has been studied. We have demonstrated that PLA underwent degradation within one month in a substrate that simulated standard industrial composting. Regardless of the initial structure of the samples, the number-average molecular weight (Mn) decreased to 4 kDa while the degree of crystallinity increased to about 70% after 21 days of composting. Addition of an inoculant to the standard substrate resulted in the accelerated degradation of the PLA samples for one week due to an abiotic hydrolysis. These findings have confirmed that industrial composting could solve the problem of plastic disposal at least for PLA.
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Affiliation(s)
- Elena Trofimchuk
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
- Scientific Laboratory “Advanced Composite Materials and Technologies”, Plekhanov Russian University of Economics, Moscow 117997, Russia
| | - Valeria Ostrikova
- Winogradsky Institute of Microbiology, Federal Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia; (V.O.); (A.S.); (V.M.)
| | - Olga Ivanova
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
| | - Marina Moskvina
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
| | - Anna Plutalova
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
| | - Tatyana Grokhovskaya
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
| | - Anna Shchelushkina
- Winogradsky Institute of Microbiology, Federal Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia; (V.O.); (A.S.); (V.M.)
| | - Alexander Efimov
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
| | - Elena Chernikova
- Department of Chemistry, Moscow State University, Moscow 119991, Russia; (O.I.); (M.M.); (A.P.); (T.G.); (A.E.); (E.C.)
| | - Shenghua Zhang
- College of Harbour and Coastal Engineering, Jimei University, Xiamen 361021, China;
| | - Vladimir Mironov
- Winogradsky Institute of Microbiology, Federal Research Center of Biotechnology, Russian Academy of Sciences, Moscow 119071, Russia; (V.O.); (A.S.); (V.M.)
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Rosland NA, Ikhsan N, Min CC, Yusoff FM, Karim M. Influence of Symbiotic Probiont Strains on the Growth of Amphora and Chlorella and Its Potential Protections Against Vibrio spp. in Artemia. Curr Microbiol 2021; 78:3901-3912. [PMID: 34522979 DOI: 10.1007/s00284-021-02642-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Accepted: 08/24/2021] [Indexed: 11/29/2022]
Abstract
The emerging aquaculture industry is in need of non-antibiotic-based disease control approaches to minimize the risk of antibiotic-resistant bacteria. Bacterial infections mainly caused by Vibrio spp. have caused mass mortalities of fish especially during the larval stages. The objectives of this study were to verify the potential of symbiotic probiont strains, isolated from microalgae (Amphora, Chlorella, and Spirulina) for suppressing the growth of Vibrio spp. and at the same time ascertain their abilities to enhance microalgal biomass by mutualistic interactions through microalgae-bacteria symbiosis. In addition, in vivo studies on Artemia bioencapsulated with probiont strains (single strain and mix strains) and microalgae were evaluated. The selected potential probionts were identified as Lysinibacillus fusiformis strain A-1 (LFA-1), Bacillus sp. strain A-2 (BA-2), Lysinibacillus fusiformis strain Cl-3 (LFCl-3), and Bacillus pocheonensis strain S-2 (BPS-2) using 16s rRNA. The cell densities of Amphora culture supplemented with BA-2 and Chlorella culture supplemented with LFCl-3 were higher than those of the controls. Artemia bioencapsulated with mix strains (LFA-1 + BA-2 + LFCl-3 + BPS-2) and Amphora demonstrated the highest survival rate compared to the controls, after being challenged with V. harveyi (60 ± 4%) and V. parahaemolyticus (78 ± 2%). Our study postulated that BA-2 and LFCl-3 were found to be good promoting bacteria for microalgal growth and microalgae serve as a vector to transport probiotic into Artemia. Moreover, mixture of potential probionts is beneficial for Artemia supplementation in conferring protection to Artemia nauplii against pathogenic Vibrios.
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Affiliation(s)
- Natasya-Ain Rosland
- Laboratory of Aquatic Animal Health and Therapeutics, Institute of Bioscience, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Natrah Ikhsan
- Laboratory of Aquatic Animal Health and Therapeutics, Institute of Bioscience, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.,Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Chong C Min
- Laboratory of Aquatic Animal Health and Therapeutics, Institute of Bioscience, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.,Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia
| | - Fatimah M Yusoff
- Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.,International Institute of Aquaculture and Aquatic Sciences (I-AQUAS) UPM, Jalan Kemang Indah 6 Teluk Kemang, 70150, Batu 7Port Dickson, Negeri Sembilan, Malaysia
| | - Murni Karim
- Department of Aquaculture, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia. .,International Institute of Aquaculture and Aquatic Sciences (I-AQUAS) UPM, Jalan Kemang Indah 6 Teluk Kemang, 70150, Batu 7Port Dickson, Negeri Sembilan, Malaysia.
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Huang HJ, Lee YH, Hsu YH, Liao CT, Lin YF, Chiu HW. Current Strategies in Assessment of Nanotoxicity: Alternatives to In Vivo Animal Testing. Int J Mol Sci 2021; 22:4216. [PMID: 33921715 PMCID: PMC8073679 DOI: 10.3390/ijms22084216] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 04/01/2021] [Accepted: 04/16/2021] [Indexed: 12/12/2022] Open
Abstract
Millions of experimental animals are widely used in the assessment of toxicological or biological effects of manufactured nanomaterials in medical technology. However, the animal consciousness has increased and become an issue for debate in recent years. Currently, the principle of the 3Rs (i.e., reduction, refinement, and replacement) is applied to ensure the more ethical application of humane animal research. In order to avoid unethical procedures, the strategy of alternatives to animal testing has been employed to overcome the drawbacks of animal experiments. This article provides current alternative strategies to replace or reduce the use of experimental animals in the assessment of nanotoxicity. The currently available alternative methods include in vitro and in silico approaches, which can be used as cost-effective approaches to meet the principle of the 3Rs. These methods are regarded as non-animal approaches and have been implemented in many countries for scientific purposes. The in vitro experiments related to nanotoxicity assays involve cell culture testing and tissue engineering, while the in silico methods refer to prediction using molecular docking, molecular dynamics simulations, and quantitative structure-activity relationship (QSAR) modeling. The commonly used novel cell-based methods and computational approaches have the potential to help minimize the use of experimental animals for nanomaterial toxicity assessments.
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Affiliation(s)
- Hung-Jin Huang
- Graduate Institute of Clinical Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan;
| | - Yu-Hsuan Lee
- Department of Cosmeceutics, China Medical University, Taichung 406040, Taiwan;
| | - Yung-Ho Hsu
- Division of Nephrology, Department of Internal Medicine, Hsin Kuo Min Hospital, Taipei Medical University, Taoyuan City 320001, Taiwan;
- Department of Internal Medicine, School of Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan;
- TMU Research Center of Urology and Kidney, Taipei Medical University, Taipei 11031, Taiwan
| | - Chia-Te Liao
- Department of Internal Medicine, School of Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan;
- TMU Research Center of Urology and Kidney, Taipei Medical University, Taipei 11031, Taiwan
- Division of Nephrology, Department of Internal Medicine, Shuang Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan
| | - Yuh-Feng Lin
- Graduate Institute of Clinical Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan;
- TMU Research Center of Urology and Kidney, Taipei Medical University, Taipei 11031, Taiwan
- Division of Nephrology, Department of Internal Medicine, Shuang Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan
| | - Hui-Wen Chiu
- Graduate Institute of Clinical Medicine, College of Medicine, Taipei Medical University, Taipei 11031, Taiwan;
- TMU Research Center of Urology and Kidney, Taipei Medical University, Taipei 11031, Taiwan
- Division of Nephrology, Department of Internal Medicine, Shuang Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan
- Department of Medical Research, Shuang Ho Hospital, Taipei Medical University, New Taipei City 23561, Taiwan
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Meneses DP, Paixão LMN, Fonteles TV, Gudiña EJ, Rodrigues LR, Fernandes FA, Rodrigues S. Esterase production by Aureobasidium pullulans URM 7059 in stirred tank and airlift bioreactors using residual biodiesel glycerol as substrate. Biochem Eng J 2021. [DOI: 10.1016/j.bej.2021.107954] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Gurumallesh P, Ramakrishnan B, Dhurai B. A novel metalloprotease from banana peel and its biochemical characterization. Int J Biol Macromol 2019; 134:527-535. [PMID: 31078589 DOI: 10.1016/j.ijbiomac.2019.05.051] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 04/27/2019] [Accepted: 05/08/2019] [Indexed: 11/24/2022]
Abstract
Protein cleaving enzymes, called proteases are one of the most commercially used enzymes possessing extensive applications in various industries. The present study was focused on screening, extraction, purification and characterization of protease from banana peel. Twelve different varieties of banana peels were screened for the protease activity. The maximum activity of the isolated enzyme was 230.4 CDU/mg from Nendran banana. The crude enzyme was purified up to 8.1 fold with the yield of 61.34%. The molecular weight of the purified fraction was found to be 40 kDa. The optimum conditions for maximum protease activity were achieved at 30 °C and pH 7. The Lineweaver-Burk plot exhibited the kinetic parameters of the enzyme such as Vmax and Km as 588.4 CDU/mg and 15.2 mg/ml respectively. The influence of different inhibitors, metal ions, organic solvents, detergents, oxidising agents and salinity were examined. The collagenolytic activity was tested with purified type I collagen as a substrate. The enzyme was tested for cell cytotoxicity, detection of apoptosis using fluorescent dyes and antitumor activity. The results demonstrated that protease from banana peel was of high significance and potential for usage in therapeutic for breaking down collagen/peptide bonds.
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Affiliation(s)
- Poorani Gurumallesh
- Department of Biotechnology, Kumaraguru College of Technology, Coimbatore, India
| | - Baskar Ramakrishnan
- Department of Biotechnology, Kumaraguru College of Technology, Coimbatore, India.
| | - Bhaarathi Dhurai
- Department of Fashion Technology, Kumaraguru College of Technology, Coimbatore, India
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Production of Oxalate Oxidase from Endophytic Ochrobactrum intermedium CL6. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2018. [DOI: 10.22207/jpam.12.4.75] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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Mokashe N, Chaudhari B, Patil U. Operative utility of salt-stable proteases of halophilic and halotolerant bacteria in the biotechnology sector. Int J Biol Macromol 2018; 117:493-522. [DOI: 10.1016/j.ijbiomac.2018.05.217] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2018] [Revised: 05/27/2018] [Accepted: 05/28/2018] [Indexed: 09/30/2022]
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Gong X, Tian W, Bai J, Qiao K, Zhao J, Wang L. Highly efficient deproteinization with an ammonifying bacteria Lysinibacillus fusiformis isolated from brewery spent diatomite. J Biosci Bioeng 2018; 127:326-332. [PMID: 30228039 DOI: 10.1016/j.jbiosc.2018.08.004] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2018] [Revised: 07/25/2018] [Accepted: 08/07/2018] [Indexed: 11/28/2022]
Abstract
To explore a new method for bio-regeneration of high-protein brewery spent diatomite, an ammonifying bacteria (BSD1) was screened out from it and identified as Lysinibacillus fusiformis. The protein degradation characteristics of BSD1 was studied with rice protein as the sole nitrogen source. Maximum protein degradation activity was obtained when BSD1 was inoculated with an inoculum of 5% into a medium with glucose as carbon source and initial pH value of 7.0 and incubated at 30°C for 48 h. In this optimal condition, protein concentration decreased from 156.8 mg/L to 19.2 mg/L, and protein degradation efficiency of BSD1 reached 88%. Free amino acid analysis showed that the content of Phe, Tyr, Pro, Ala, Lys, Thr and His increased in protein degradation process. After degradation, NH4+N concentration producing in medium supernatant reached 232.2 mg/L. These results indicated the strain BSD1 could transform proteins into free amino acids and eventually convert them to ammonium or ammonia. Furthermore, strain BSD1 could also be used for deproteinization of brewery spent diatomite and 51% of proteins in spent diatomite were degraded. After biological deproteinization the specific surface area and total pore volume of diatomite improved obviously. These results illustrated that the application of strain BSD1 for bio-regeneration of high-protein brewery spent diatomite was efficient and feasible.
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Affiliation(s)
- Xiaoxi Gong
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Weijun Tian
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China; Key Laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao 266100, China.
| | - Jie Bai
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China; Key Laboratory of Marine Environment and Ecology, Ministry of Education, Qingdao 266100, China
| | - Kaili Qiao
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Jing Zhao
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
| | - Liang Wang
- College of Environmental Science and Engineering, Ocean University of China, Qingdao 266100, China
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K D, M SP, Gautam P. Purification, immobilization and kinetic characterization of G-x-S-x-G esterase with short chain fatty acid specificity from Lysinibacillus fusiformis AU01. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2017. [DOI: 10.1016/j.bcab.2017.09.007] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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10
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McKenna OE, Posselt G, Briza P, Lackner P, Schmitt AO, Gadermaier G, Wessler S, Ferreira F. Multi-Approach Analysis for the Identification of Proteases within Birch Pollen. Int J Mol Sci 2017; 18:ijms18071433. [PMID: 28677627 PMCID: PMC5535924 DOI: 10.3390/ijms18071433] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2017] [Revised: 06/28/2017] [Accepted: 06/30/2017] [Indexed: 12/16/2022] Open
Abstract
Birch pollen allergy is highly prevalent, with up to 100 million reported cases worldwide. Proteases in such allergen sources have been suggested to contribute to primary sensitisation and exacerbation of allergic disorders. Until now the protease content of Betula verrucosa, a birch species endemic to the northern hemisphere has not been studied in detail. Hence, we aim to identify and characterise pollen and bacteria-derived proteases found within birch pollen. The pollen transcriptome was constructed via de novo transcriptome sequencing and analysis of the proteome was achieved via mass spectrometry; a cross-comparison of the two databases was then performed. A total of 42 individual proteases were identified at the proteomic level. Further clustering of proteases into their distinct catalytic classes revealed serine, cysteine, aspartic, threonine, and metallo-proteases. Further to this, protease activity of the pollen was quantified using a fluorescently-labelled casein substrate protease assay, as 0.61 ng/mg of pollen. A large number of bacterial strains were isolated from freshly collected birch pollen and zymographic gels with gelatinase and casein, enabled visualisation of proteolytic activity of the pollen and the collected bacterial strains. We report the successful discovery of pollen and bacteria-derived proteases of Betula verrucosa.
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Affiliation(s)
- Olivia E McKenna
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
| | - Gernot Posselt
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
| | - Peter Briza
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
| | - Peter Lackner
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
| | - Armin O Schmitt
- Department of Breeding Informatics, Georg August-Universität Göttingen, Göttingen 37073, Germany.
| | - Gabriele Gadermaier
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
| | - Silja Wessler
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
| | - Fatima Ferreira
- Department of Molecular Biology, University of Salzburg, Salzburg 5020, Austria.
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Divakar K, Suryia Prabha M, Nandhinidevi G, Gautam P. Kinetic characterization and fed-batch fermentation for maximal simultaneous production of esterase and protease from Lysinibacillus fusiformis AU01. Prep Biochem Biotechnol 2017; 47:323-332. [PMID: 27737615 DOI: 10.1080/10826068.2016.1244685] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
The simultaneous production of intracellular esterase and extracellular protease from the strain Lysinibacillus fusiformis AU01 was studied in detail. The production was performed both under batch and fed-batch modes. The maximum yield of intracellular esterase and protease was obtained under full oxygen saturation at the beginning of the fermentation. The data were fitted to the Luedeking-Piret model and it was shown that the enzyme (both esterase and protease) production was growth associated. A decrease in intracellular esterase and increase in the extracellular esterase were observed during late stationary phase. The appearance of intracellular proteins in extracellular media and decrease in viable cell count and biomass during late stationary phase confirmed that the presence of extracellular esterase is due to cell lysis. Even though the fed-batch fermentation with different feeding strategies showed improved productivity, feeding yeast extract under DO-stat fermentation conditions showed highest intracellular esterase and protease production. Under DO-stat fed-batch cultivation, maximum intracellular esterase activity of 820 × 103 U/L and extracellular protease activity of 172 × 103 U/L were obtained at the 16th hr. Intracellular esterase and extracellular protease production were increased fivefold and fourfold, respectively, when compared to batch fermentation performed under shake flask conditions.
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Affiliation(s)
- K Divakar
- a Department of Biotechnology , National Institute of Technology , Warangal , India.,b Centre for Biotechnology , Anna University , Chennai , India
| | - M Suryia Prabha
- b Centre for Biotechnology , Anna University , Chennai , India
| | - G Nandhinidevi
- b Centre for Biotechnology , Anna University , Chennai , India
| | - P Gautam
- b Centre for Biotechnology , Anna University , Chennai , India
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Anbu P, So JS, Hur BK, Yun HS. Organic solvent stable protease isolation and characterization from organic solvent tolerant strain of Lysinibacillus sphaericus PAP02. Biologia (Bratisl) 2016. [DOI: 10.1515/biolog-2016-0131] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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