Urate crystal deposition, prevention and various diagnosis techniques of GOUT arthritis disease: a comprehensive review

Single-cell and genome-wide Mendelian randomization identifies causative genes for gout

BACKGROUND

Gout is a prevalent manifestation of metabolic osteoarthritis induced by elevated blood uric acid levels. The purpose of this study was to investigate the mechanisms of gene expression regulation in gout disease and elucidate its pathogenesis.

METHODS

The study integrated gout genome-wide association study (GWAS) data, single-cell transcriptomics (scRNA-seq), expression quantitative trait loci (eQTL), and methylation quantitative trait loci (mQTL) data for analysis, and utilized two-sample Mendelian randomization study to comprehend the causal relationship between proteins and gout.

RESULTS

We identified 17 association signals for gout at unique genetic loci, including four genes related by protein-protein interaction network (PPI) analysis: TRIM46, THBS3, MTX1, and KRTCAP2. Additionally, we discerned 22 methylation sites in relation to gout. The study also found that genes such as TRIM46, MAP3K11, KRTCAP2, and TM7SF2 could potentially elevate the risk of gout. Through a Mendelian randomization (MR) analysis, we identified three proteins causally associated with gout: ADH1B, BMP1, and HIST1H3A.

CONCLUSION

According to our findings, gout is linked with the expression and function of particular genes and proteins. These genes and proteins have the potential to function as novel diagnostic and therapeutic targets for gout. These discoveries shed new light on the pathological mechanisms of gout and clear the way for future research on this condition.

Real-time and accurate calibration detection of gout stones based on terahertz and Raman spectroscopy

Gout is a metabolic disease that can result in the formation of gout stones. It is essential to promptly identify and confirm the type of gout stone to alleviate pain and inflammation in patients and prevent complications associated with gout stones. Traditional detection methods, such as X-ray, ultrasound, CT scanning, and blood uric acid measurement, have limitations in early diagnosis. Therefore, this article aims to explore the use of micro Raman spectroscopy, Fourier transform infrared spectroscopy, and Terahertz time-domain spectroscopy systems to detect gout stone samples. Through comparative analysis, Terahertz technology and Raman spectroscopy have been found to provide chemical composition and molecular structure information of different wavebands of samples. By combining these two technologies, faster and more comprehensive analysis and characterization of samples can be achieved. In the future, handheld portable integrated testing instruments will be developed to improve the efficiency and accuracy of testing. Furthermore, this article proposes establishing a spectral database of gout stones and urinary stones by combining Raman spectroscopy and Terahertz spectroscopy. This database would provide accurate and comprehensive technical support for the rapid diagnosis of gout in clinical practice.

Identification of phosphorylation site using S-padding strategy based convolutional neural network

Purpose

Abnormal phosphorylation has been proved to associate with a variety of human diseases, and the identification of phosphorylation sites is one of the research hotspots in healthcare. The study of phosphorylation site prediction in deep learning models often introduces a variety of information, and the utilization of complex models limits the usage scenarios of the models.

Methods

An enhanced deep learning method with S-padding strategy based on convolutional neural network is proposed in this paper. The S-padding strategy forms a three-dimensional matrix with extension information from original amino acid sequences, and a corresponding 2D-CNN model is designed to abstract the comprehensive features of phosphorylation site area in protein sequences.

Results

The fivefold cross-validation experiments are conducted, and the results show the performance of the proposed method on human dataset can achieve an accuracy of 89.68 % on serine/threonine sites and 88.16 % on tyrosine sites, respectively. Furthermore, phosphorylation site prediction on different organisms obtains the accuracy, sensitivity, and specificity of over 0.85, indicating a potential capability on phosphorylation site prediction task. Comparison result with existing models shows that the proposed method obtains better performance on both accuracy and AUC value, and the proposed method can further improve performance with sufficient training data.

Conclusion

This method enables proteome-wide predictions via models trained on a large amount of phosphorylation data, further exploiting the potential of protein phosphorylation site identification, and helping to provide insights into phosphorylation mechanisms.

MiR-223-3p inhibits inflammation and pyroptosis in monosodium urate-induced rats and fibroblast-like synoviocytes by targeting NLRP3

Down-regulated miR-223-3p was found in rheumatoid arthritis. This study aimed to further explore the level and role of miR-223-3p in gout arthritis (GA). After monosodium urate (MSU)-induced GA rat and fibroblast-like synoviocytes (FLSs) models were established, the rat paw volume and gait score were documented and the FLSs were transfected with miR-223-3p mimic/inhibitor or NLR family pyrin domain containing 3 (NLRP3) over-expression plasmids. The MiR-223-3p target was found through bioinformatics and the dual-luciferase reporter. The rat joint pathological damage was observed by hematoxylin and eosin staining. The levels of interleukin (IL)-1β, tumor necrosis factor (TNF)-α and articular elastase in rats were detected by enzyme-linked immunosorbent assay (ELISA). The viability and pyroptosis of FLSs were detected by methyl thiazolyl tetrazolium (MTT) and flow cytometry. The expressions of miR-223-3p, NLRP3, cleaved caspase-1, IL-1β, apoptosis-associated speck-like protein (AS) and cleaved N-terminal gasdermin D (GSDMD) in FLSs or rat synovial tissues were detected by reverse transcription-quantitative polymerase chain reaction (RT-qPCR), immunofluorescence, Western blot or immunohistochemistry analysis. MSU increased the paw volume, gait score, inflammation in synovial tissues and increased the levels of IL-1β, TNF-α and articular elastase in rats. MSU decreased the viability and increased the pyroptosis of FLSs, up-regulated the expression of NLRP3, ASC, cleaved caspase-1, cleaved N-terminal GSDM, and IL-1β, and down-regulated miR-223-3p expression in synovial tissues of rat joints and FLSs. MiR-223-3p mimic reversed the effect of MSU on lowering cell viability, increasing pyroptosis in FLSs, while miR-223-3p inhibitor further enhanced the effect of MSU on FLSs. NLRP3 was a target of miR-223-3p. Also, NLRP3 over-expression reversed the effects of miR-223-3p on MSU-induced FLSs. MiR-223-3p inhibited pyroptosis in MSU-induced rats and FLSs by targeting NLRP3.

Accurate computation: COVID-19 rRT-PCR positive test dataset using stages classification through textual big data mining with machine learning

In every field of life, advanced technology has become a rapid outcome, particularly in the medical field. The recent epidemic of the coronavirus disease 2019 (COVID-19) has promptly become outbreaks to identify early action from suspected cases at the primary stage over the risk prediction. It is overbearing to progress a control system that will locate the coronavirus. At present, the confirmation of COVID-19 infection by the ideal standard test of reverse transcription-polymerase chain reaction (rRT-PCR) by the extension of RNA viral, although it presents identified from deficiencies of long reversal time to generate results in 2-4 h of corona with a necessity of certified laboratories. In this proposed system, a machine learning (ML) algorithm is used to classify the textual clinical report into four classes by using the textual data mining method. The algorithm of the ensemble ML classifier has performed feature extraction using the advanced techniques of term frequency-inverse document frequency (TF/IDF) which is an effective information retrieval technique from the corona dataset. Humans get infected by coronaviruses in three ways: first, mild respiratory disease which is globally pandemic, and human coronaviruses are caused by HCoV-NL63, HCoV-OC43, HCoV-HKU1, and HCoV-229E; second, the zoonotic Middle East respiratory syndrome coronavirus (MERS-CoV); and finally, higher case casualty rate defined as severe acute respiratory syndrome coronavirus (SARS-CoV). By using the machine learning techniques, the three-way COVID-19 stages are classified by the extraction of the feature using the data retrieval process. The TF/IDF is used to measure and evaluate statistically the text data mining of COVID-19 patient's record list for classification and prediction of the coronavirus. This study established the feasibility of techniques to analyze blood tests and machine learning as an alternative to rRT-PCR for detecting the category of COVID-19-positive patients.

An Enhanced Symptom Clustering with Profile Based Prescription Suggestion in Biomedical application

The application of data mining has been increasing day to day whereas the data base is also enhancing simultaneously. Hence retrieving required content from a huge data base is a critical task. This paper focus on biomedical engineering field, it concentrates on initial stage of database such as data preprocessing and cleansing to deal with noise and missing data in large biomedical data sets. The database of biomedical is huge and enhancing nature retrieving of specific content will be a critical task. Suggesting prescription with respect to identified disease based on profile analysis of specific patient is not available in current system. This paper proposes a recommendation system of prescription based on disease identification is done by combining user and professional suggestion with profile based analysis. Hence this focuses on profile based suggestions and report will be generated. The retrieving of specific suggestion from a huge database is done by hybrid feature selection algorithm. This approach focuses on enabling recommendation based on user profile and implementing Hybrid feature selection algorithm to retrieve specific content from a huge database. Hence it attains better retrieval of required content from a huge database compared to other existing approaches and suggests better recommendation with respect to user profile.

Improving the Accuracy of Feature Selection in Big Data Mining Using Accelerated Flower Pollination (AFP) Algorithm

In recent times, the main problem associated with big data analytics is its high dimensional data over the search space. Such data gathers continuously in search space making traditional algorithms infeasible for data mining in real time environment. Hence, feature selection is an important method to lighten the load during processing while inducing a model for mining. However, mining over such high dimensional data leads to formulation of optimal feature subset, which grows exponentially and leads to intractable computational demand. In this paper, a novel lightweight mechanism is used as a feature selection method, which solves the after effects arising with optimal feature selection. The feature selection in big data mining is done using accelerated flower pollination (AFP) algorithm. This method improves the accuracy of feature selection with reduced processing time. The proposed method is tested under larger set of data with high dimensionality to test the performance of proposed method.

Blood Glucose Regulation for Post-Operative Patients with Diabetics and Hypertension Continuum: A Cascade Control-Based Approach

Management of glycemic level in post-operative condition is critical for hypertensive patients and the post-operative stress may results in hyperglycemia, hyper insulin and osmotic diuresis. Recent medical research shows that diabetic and hypertension hands together in a significant overlap in its etiology and its disease mechanism. It is clear that there is a call for monitoring in the parameter and controlling the glucose level particularly in the presence of hypertension. This paper proposes the novel complex (cascade) control system to control the insulin infusion level particularly in the presence of hypertension. Based on the requirements the structure has been designed and the simulation results indicates that the proposed control strategy shows better results and may achieve potentially better glycemic control to the hypersensitive diabetic patients.

An Enhancement of Deep Learning Algorithm for Brain Tumor Segmentation Using Kernel Based CNN with M-SVM

The brain tumor can be created by uncontrollable increase of abnormal cells in tissue of brain and it has two kinds of tumors: one is benign and another one is malignant tumor. The benign brain tumor does not affect the adjacent normal and healthy tissue but the malignant tumor can affect the neighboring tissues of brain that can lead to the death of person. An early detection of brain tumor can be required to protect the survival of patients. Usually, the brain tumor is detected using MRI scanning method. However, the radiologists are not providing the effective tumor segmentation in MRI image due to the irregular shape of tumors and position of tumor in the brain. Accurate brain tumor segmentation is needed to locate the tumor and it is used to give the correct treatment for a patient and it provides the key to the doctor who must execute the surgery for patient. In this paper, a novel deep learning algorithm (kernel based CNN) with M-SVM is presented to segment the tumor automatically and efficiently. This presented work contains several steps that are preprocessing, feature extraction, image classification and tumor segmentation of brain. The MRI image is smoothed and enhanced by Laplacian of Gaussian filtering method (LoG) with Contrast Limited Adaptive Histrogram Equalization (CLAHE) and feature can be extracted from it based on tumor shape position, shape and surface features in brain. Consequently, the image classification is done using M-SVM depending on the selected features. From MRI image, the tumor is segmented with help of kernel based CNN method.. Experimental results of proposed method can show that this presented technique can executes brain tumor segmentation accurately reaching almost 84% in evaluation with existing algorithms.

Non-Linear Filtering Technique Used for Testing the Human Lumbar Spine FEA Model

In this paper, the objective is to generate a mesh model of a spine that simulates numerically the biomedical properties of two vertebrae (L4 and L5) of human spine and an inter vertebrae disc using Finite Element Analysis (FEA) technique. Here, different types of non-linear filters and different edge detection techniques are used to segment the edges and the results are compared. The result shows that median filter obtains improved segmented output results in terms of edge length density, average magnitude, final threshold, initial position, and fine-tuned image. The behaviour of spine FEA model is analysed in terms of various parameters like equivalent elastic strain, total deformation, maximum principal elastic strain, minimum principal elastic strain, shear elastic strain, normal elastic strain, and minimum and maximum principal stress, equivalent stress, shear stress and normal stress. These parameters are used to analyse the human spine model under different conditions and different angles using ANSYS simulation tool. Further, MATLAB is carried out to implement various filters and edge detectors on proposed spine model.

A new approach to classify and rank events based videos based on Event of Detection

In the ongoing days, the development of sight and sound substance and information stockpiling produces colossally. Clients can extricate any kind of data they require from recordings. This outcomes in quick development of video information, client's discover complexity while procurement their important data. To address this, EBR (Event Based Ranking) propose another way to deal with group and rank mixed media occasions based recordings as per client's advantage. Clients are generally keen on the best positioned and occasion pertinent recordings of returned query output. An occasion based positioning methodology which empowers clients to iteratively peruse the video as per their inclination. The proposed conspire has new way to deal with order and rank occasions based recordings. It improves the exactness of video recovery which incorporates certain functionalities for customized look. The data of clients' input is used in re-positioning technique to additionally enhance the recovering exactness. It gives the customized lastly re-positioned pertinent outcomes to shape a brought together precise query output. EBR is more precise in foreseeing and positioning client particular inclinations and diminishes the time many-sided quality. This Paper proposed a calculation comprises of: video rank calculation, occasion term suggestion, and client criticism and client session.