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Li J, Li J, Guo C, Chen Q, Liu G, Li L, Luo X, Wei H. Multicentric intelligent cardiotocography signal interpretation using deep semi-supervised domain adaptation via minimax entropy and domain invariance. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2024; 249:108145. [PMID: 38582038 DOI: 10.1016/j.cmpb.2024.108145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 03/22/2024] [Accepted: 03/24/2024] [Indexed: 04/08/2024]
Abstract
BACKGROUND AND OBJECTIVE Obstetricians use Cardiotocography (CTG), which is the continuous recording of fetal heart rate and uterine contraction, to assess fetal health status. Deep learning models for intelligent fetal monitoring trained on extensively labeled and identically distributed CTG records have achieved excellent performance. However, creation of these training sets requires excessive time and specialist labor for the collection and annotation of CTG signals. Previous research has demonstrated that multicenter studies can improve model performance. However, models trained on cross-domain data may not generalize well to target domains due to variance in distribution among datasets. Hence, this paper conducted a multicenter study with Deep Semi-Supervised Domain Adaptation (DSSDA) for intelligent interpretation of antenatal CTG signals. This approach helps to align cross-domain distribution and transfer knowledge from a label-rich source domain to a label-scarce target domain. METHODS We proposed a DSSDA framework that integrated Minimax Entropy and Domain Invariance (DSSDA-MMEDI) to reduce inter-domain gaps and thus achieve domain invariance. The networks were developed using GoogLeNet to extract features from CTG signals, with fully connected, softmax layers for classification. We designed a Dynamic Gradient-driven strategy based on Mutual Information (DGMI) to unify the losses from Minimax Entropy (MME), Domain Invariance (DI), and supervised cross-entropy during iterative learning. RESULTS We validated our DSSDA model on two datasets collected from collaborating healthcare institutions and mobile terminals as the source and target domains, which contained 16,355 and 3,351 CTG signals, respectively. Compared to the results achieved with deep learning networks without DSSDA, DSSDA-MMEDI significantly improved sensitivity and F1-score by over 6%. DSSDA-MMEDI also outperformed other state-of-the-art DSSDA approaches for CTG signal interpretation. Ablation studies were performed to determine the unique contribution of each component in our DSSDA mechanism. CONCLUSIONS The proposed DSSDA-MMEDI is feasible and effective for alignment of cross-domain data and automated interpretation of multicentric antenatal CTG signals with minimal annotation cost.
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Affiliation(s)
- Jialu Li
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China
| | - Jun Li
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China; College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, 518060, China
| | - Chenshuo Guo
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China
| | - Qinqun Chen
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China
| | - Guiqing Liu
- The First Affiliated Hospital of Guangzhou University of Chinese Medicine, Guangzhou, 510405, China
| | - Li Li
- Guangzhou Sunray Medical Apparatus Co. Ltd, Guangzhou, 510620, China; Tianhe District People's Hospital, First Affiliated Hospital of Jinan University, Guangzhou, 510630, China
| | - Xiaomu Luo
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China
| | - Hang Wei
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China; Intelligent Chinese Medicine Research Institute, Guangzhou University of Chinese Medicine, Guangzhou, 510006, China.
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Francis F, Luz S, Wu H, Stock SJ, Townsend R. Machine learning on cardiotocography data to classify fetal outcomes: A scoping review. Comput Biol Med 2024; 172:108220. [PMID: 38489990 DOI: 10.1016/j.compbiomed.2024.108220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 02/02/2024] [Accepted: 02/25/2024] [Indexed: 03/17/2024]
Abstract
INTRODUCTION Uterine contractions during labour constrict maternal blood flow and oxygen delivery to the developing baby, causing transient hypoxia. While most babies are physiologically adapted to withstand such intrapartum hypoxia, those exposed to severe hypoxia or with poor physiological reserves may experience neurological injury or death during labour. Cardiotocography (CTG) monitoring was developed to identify babies at risk of hypoxia by detecting changes in fetal heart rate (FHR) patterns. CTG monitoring is in widespread use in intrapartum care for the detection of fetal hypoxia, but the clinical utility is limited by a relatively poor positive predictive value (PPV) of an abnormal CTG and significant inter and intra observer variability in CTG interpretation. Clinical risk and human factors may impact the quality of CTG interpretation. Misclassification of CTG traces may lead to both under-treatment (with the risk of fetal injury or death) or over-treatment (which may include unnecessary operative interventions that put both mother and baby at risk of complications). Machine learning (ML) has been applied to this problem since early 2000 and has shown potential to predict fetal hypoxia more accurately than visual interpretation of CTG alone. To consider how these tools might be translated for clinical practice, we conducted a review of ML techniques already applied to CTG classification and identified research gaps requiring investigation in order to progress towards clinical implementation. MATERIALS AND METHOD We used identified keywords to search databases for relevant publications on PubMed, EMBASE and IEEE Xplore. We used Preferred Reporting Items for Systematic Review and Meta-Analysis for Scoping Reviews (PRISMA-ScR). Title, abstract and full text were screened according to the inclusion criteria. RESULTS We included 36 studies that used signal processing and ML techniques to classify CTG. Most studies used an open-access CTG database and predominantly used fetal metabolic acidosis as the benchmark for hypoxia with varying pH levels. Various methods were used to process and extract CTG signals and several ML algorithms were used to classify CTG. We identified significant concerns over the practicality of using varying pH levels as the CTG classification benchmark. Furthermore, studies needed to be more generalised as most used the same database with a low number of subjects for an ML study. CONCLUSION ML studies demonstrate potential in predicting fetal hypoxia from CTG. However, more diverse datasets, standardisation of hypoxia benchmarks and enhancement of algorithms and features are needed for future clinical implementation.
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Affiliation(s)
| | | | - Honghan Wu
- Institute of Health Informatics, University College London, UK
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Hussain NM, O'Halloran M, McDermott B, Elahi MA. Fetal monitoring technologies for the detection of intrapartum hypoxia - challenges and opportunities. Biomed Phys Eng Express 2024; 10:022002. [PMID: 38118183 DOI: 10.1088/2057-1976/ad17a6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 12/20/2023] [Indexed: 12/22/2023]
Abstract
Intrapartum fetal hypoxia is related to long-term morbidity and mortality of the fetus and the mother. Fetal surveillance is extremely important to minimize the adverse outcomes arising from fetal hypoxia during labour. Several methods have been used in current clinical practice to monitor fetal well-being. For instance, biophysical technologies including cardiotocography, ST-analysis adjunct to cardiotocography, and Doppler ultrasound are used for intrapartum fetal monitoring. However, these technologies result in a high false-positive rate and increased obstetric interventions during labour. Alternatively, biochemical-based technologies including fetal scalp blood sampling and fetal pulse oximetry are used to identify metabolic acidosis and oxygen deprivation resulting from fetal hypoxia. These technologies neither improve clinical outcomes nor reduce unnecessary interventions during labour. Also, there is a need to link the physiological changes during fetal hypoxia to fetal monitoring technologies. The objective of this article is to assess the clinical background of fetal hypoxia and to review existing monitoring technologies for the detection and monitoring of fetal hypoxia. A comprehensive review has been made to predict fetal hypoxia using computational and machine-learning algorithms. The detection of more specific biomarkers or new sensing technologies is also reviewed which may help in the enhancement of the reliability of continuous fetal monitoring and may result in the accurate detection of intrapartum fetal hypoxia.
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Affiliation(s)
- Nadia Muhammad Hussain
- Discipline of Electrical & Electronic Engineering, University of Galway, Ireland
- Translational Medical Device Lab, Lambe Institute for Translational Research, University Hospital Galway, Ireland
| | - Martin O'Halloran
- Discipline of Electrical & Electronic Engineering, University of Galway, Ireland
- Translational Medical Device Lab, Lambe Institute for Translational Research, University Hospital Galway, Ireland
| | - Barry McDermott
- Translational Medical Device Lab, Lambe Institute for Translational Research, University Hospital Galway, Ireland
- College of Medicine, Nursing & Health Sciences, University of Galway, Ireland
| | - Muhammad Adnan Elahi
- Discipline of Electrical & Electronic Engineering, University of Galway, Ireland
- Translational Medical Device Lab, Lambe Institute for Translational Research, University Hospital Galway, Ireland
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Cao Z, Wang G, Xu L, Li C, Hao Y, Chen Q, Li X, Liu G, Wei H. Intelligent antepartum fetal monitoring via deep learning and fusion of cardiotocographic signals and clinical data. Health Inf Sci Syst 2023; 11:16. [PMID: 36950107 PMCID: PMC10025176 DOI: 10.1007/s13755-023-00219-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2022] [Accepted: 02/27/2023] [Indexed: 03/21/2023] Open
Abstract
Purpose Cardiotocography (CTG), which measures uterine contraction (UC) and fetal heart rate (FHR), is a crucial tool for assessing fetal health during pregnancy. However, traditional computerized cardiotocography (cCTG) approaches have non-negligible calibration errors in feature extraction and heavily rely on the expertise and prior experience to define diagnostic features from CTG or FHR signals. Although previous works have studied deep learning methods for extracting CTG or FHR features, these methods still neglect the clinical information of pregnant women. Methods In this paper, we proposed a multimodal deep learning architecture (MMDLA) for intelligent antepartum fetal monitoring that is capable of performing automatic CTG feature extraction, fusion with clinical data and classification. The multimodal feature fusion was achieved by concatenating high-level CTG features, which were extracted from preprocessed CTG signals via a convolution neural network (CNN) with six convolution layers and five fully connected layers, and the clinical data of pregnant women. Eventually, light gradient boosting machine (LGBM) was implemented as fetal status assessment classifier. The effectiveness of MMDLA was evaluated using a dataset of 16,355 cases, each of which includes FHR signal, UC signal and pertinent clinical data like maternal age and gestational age. Results With an accuracy of 90.77% and an area under the curve (AUC) value of 0.9201, the multimodal features performed admirably. The data imbalance issue was also effectively resolved by the LGBM classifier, with a normal-F1 value of 0.9376 and an abnormal-F1 value of 0.8223. Conclusion In summary, the proposed MMDLA is conducive to the realization of intelligent antepartum fetal monitoring.
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Affiliation(s)
- Zhen Cao
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006 China
| | - Guoqiang Wang
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006 China
| | - Ling Xu
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006 China
| | - Chaowei Li
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006 China
- Nvogene Co., Ltd., Tianjing, China
| | - Yuexing Hao
- Department of Human Centered Design, Cornell University, Ithaca, NY USA
| | - Qinqun Chen
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006 China
| | - Xia Li
- Guangzhou Medical University Second Affiliated Hospital, Guangzhou, China
| | - Guiqing Liu
- The First Affiliated Hospital, Guangzhou University of Chinese Medicine, Guangzhou, China
| | - Hang Wei
- School of Medical Information Engineering, Guangzhou University of Chinese Medicine, Guangzhou, 510006 China
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Francis F, Luz S, Wu H, Townsend R, Stock SS. Machine Learning to Classify Cardiotocography for Fetal Hypoxia Detection. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023; 2023:1-4. [PMID: 38083272 DOI: 10.1109/embc40787.2023.10340803] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
Abstract
Fetal hypoxia can cause damaging consequences on babies' such as stillbirth and cerebral palsy. Cardiotocography (CTG) has been used to detect intrapartum fetal hypoxia during labor. It is a non-invasive machine that measures the fetal heart rate and uterine contractions. Visual CTG suffers inconsistencies in interpretations among clinicians that can delay interventions. Machine learning (ML) showed potential in classifying abnormal CTG, allowing automatic interpretation. In the absence of a gold standard, researchers used various surrogate biomarkers to classify CTG, where some were clinically irrelevant. We proposed using Apgar scores as the surrogate benchmark of babies' ability to recover from birth. Apgar scores measure newborns' ability to recover from active uterine contraction, which measures appearance, pulse, grimace, activity and respiration. The higher the Apgar score, the healthier the baby is.We employ signal processing methods to pre-process and extract validated features of 552 raw CTG. We also included CTG-specific characteristics as outlined in the NICE guidelines. We employed ML techniques using 22 features and measured performances between ML classifiers. While we found that ML can distinguish CTG with low Apgar scores, results for the lowest Apgar scores, which are rare in the dataset we used, would benefit from more CTG data for better performance. We need an external dataset to validate our model for generalizability to ensure that it does not overfit a specific population.Clinical Relevance- This study demonstrated the potential of using a clinically relevant benchmark for classifying CTG to allow automatic early detection of hypoxia to reduce decision-making time in maternity units.
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Arain Z, Iliodromiti S, Slabaugh G, David AL, Chowdhury TT. Machine learning and disease prediction in obstetrics. Curr Res Physiol 2023; 6:100099. [PMID: 37324652 PMCID: PMC10265477 DOI: 10.1016/j.crphys.2023.100099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 05/09/2023] [Indexed: 06/17/2023] Open
Abstract
Machine learning technologies and translation of artificial intelligence tools to enhance the patient experience are changing obstetric and maternity care. An increasing number of predictive tools have been developed with data sourced from electronic health records, diagnostic imaging and digital devices. In this review, we explore the latest tools of machine learning, the algorithms to establish prediction models and the challenges to assess fetal well-being, predict and diagnose obstetric diseases such as gestational diabetes, pre-eclampsia, preterm birth and fetal growth restriction. We discuss the rapid growth of machine learning approaches and intelligent tools for automated diagnostic imaging of fetal anomalies and to asses fetoplacental and cervix function using ultrasound and magnetic resonance imaging. In prenatal diagnosis, we discuss intelligent tools for magnetic resonance imaging sequencing of the fetus, placenta and cervix to reduce the risk of preterm birth. Finally, the use of machine learning to improve safety standards in intrapartum care and early detection of complications will be discussed. The demand for technologies to enhance diagnosis and treatment in obstetrics and maternity should improve frameworks for patient safety and enhance clinical practice.
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Affiliation(s)
- Zara Arain
- Centre for Bioengineering, School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London, E1 4NS, UK
| | - Stamatina Iliodromiti
- Women's Health Research Unit, Wolfson Institute of Population Health, Queen Mary University of London, 58 Turner Street, London, E1 2AB, UK
| | - Gregory Slabaugh
- Digital Environment Research Institute, School of Electronic Engineering and Computer Science, Queen Mary University of London, London, E1 1HH, UK
| | - Anna L. David
- Elizabeth Garrett Anderson Institute for Women's Health, University College London, Medical School Building, Huntley Street, London, WC1E 6AU, UK
| | - Tina T. Chowdhury
- Centre for Bioengineering, School of Engineering and Materials Science, Queen Mary University of London, Mile End Road, London, E1 4NS, UK
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Abiyev R, Idoko JB, Altıparmak H, Tüzünkan M. Fetal Health State Detection Using Interval Type-2 Fuzzy Neural Networks. Diagnostics (Basel) 2023; 13:diagnostics13101690. [PMID: 37238176 DOI: 10.3390/diagnostics13101690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Accepted: 05/08/2023] [Indexed: 05/28/2023] Open
Abstract
Diagnosis of fetal health is a difficult process that depends on various input factors. Depending on the values or the interval of values of these input symptoms, the detection of fetal health status is implemented. Sometimes it is difficult to determine the exact values of the intervals for diagnosing the diseases and there may always be disagreement between the expert doctors. As a result, the diagnosis of diseases is often carried out in uncertain conditions and can sometimes cause undesirable errors. Therefore, the vague nature of diseases and incomplete patient data can lead to uncertain decisions. One of the effective approaches to solve such kind of problem is the use of fuzzy logic in the construction of the diagnostic system. This paper proposes a type-2 fuzzy neural system (T2-FNN) for the detection of fetal health status. The structure and design algorithms of the T2-FNN system are presented. Cardiotocography, which provides information about the fetal heart rate and uterine contractions, is employed for monitoring fetal status. Using measured statistical data, the design of the system is implemented. Comparisons of various models are presented to prove the effectiveness of the proposed system. The system can be utilized in clinical information systems to obtain valuable information about fetal health status.
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Affiliation(s)
- Rahib Abiyev
- Applied Artificial Intelligence Research Centre, Department of Computer Engineering, Near East University, Nicosia 99138, Turkey
| | - John Bush Idoko
- Department of Computer Engineering, Near East University, Nicosia 99138, Turkey
| | - Hamit Altıparmak
- Department of Computer Engineering, Near East University, Nicosia 99138, Turkey
| | - Murat Tüzünkan
- Applied Artificial Intelligence Research Centre, Near East University, Nicosia 99138, Turkey
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Aeberhard JL, Radan AP, Delgado-Gonzalo R, Strahm KM, Sigurthorsdottir HB, Schneider S, Surbek D. Artificial intelligence and machine learning in cardiotocography: A scoping review. Eur J Obstet Gynecol Reprod Biol 2023; 281:54-62. [PMID: 36535071 DOI: 10.1016/j.ejogrb.2022.12.008] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2022] [Revised: 10/19/2022] [Accepted: 12/05/2022] [Indexed: 12/13/2022]
Abstract
INTRODUCTION Artificial intelligence (AI) is gaining more interest in the field of medicine due to its capacity to learn patterns directly from data. This becomes interesting for the field of cardiotocography (CTG) interpretation, since it promises to remove existing biases and improve the well-known issues of inter- and intra-observer variability. MATERIAL AND METHODS The objective of this study was to map current knowledge in AI-assisted interpretation of CTG tracings and thus, to present different approaches with their strengths, gaps, and limitations. The search was performed on Ovid Medline and PubMed databases. The Preferred Reporting Items for Systematic Reviews and meta-Analysis for Scoping Reviews (PRISMA-ScR) guidelines were followed. RESULTS We summarized 40 different studies investigating at least one algorithm or system to classify CTG tracings. In addition, the Oxford Sonicaid system is presented because of its wide use in clinical practice. CONCLUSIONS There are several promising approaches in this area, but none of them has gained big acceptance in clinical practice. Further investigation and refinement of the algorithms and features are needed to achieve a validated decision-support system. For this purpose, larger quantities of curated and labeled data may be necessary.
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Affiliation(s)
| | - Anda-Petronela Radan
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
| | | | - Karin Maya Strahm
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
| | | | - Sophie Schneider
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
| | - Daniel Surbek
- Department of Obstetrics and Feto-maternal Medicine, University Hospital of Bern, Switzerland
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Al-yousif S, Najm IA, Talab HS, Hasan Al Qahtani N, Alfiras M, Al-Rawi OYM, Subhi Al-Dayyeni W, Amer Ahmed Alrawi A, Jabbar Mnati M, Jarrar M, Ghabban F, Al-Shareefi NA, Musa Jaber M, H. Saleh A, Md Tahir N, Najim HT, Taher M. Intrapartum cardiotocography trace pattern pre-processing, features extraction and fetal health condition diagnoses based on RCOG guideline. PeerJ Comput Sci 2022; 8:e1050. [PMID: 36092005 PMCID: PMC9454876 DOI: 10.7717/peerj-cs.1050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Accepted: 06/30/2022] [Indexed: 06/15/2023]
Abstract
CONTEXT The computerization of both fetal heart rate (FHR) and intelligent classification modeling of the cardiotocograph (CTG) is one of the approaches that are utilized in assisting obstetricians in conducting initial interpretation based on (CTG) analysis. CTG tracing interpretation is crucial for the monitoring of the fetal status during weeks into the pregnancy and childbirth. Most contemporary studies rely on computer-assisted fetal heart rate (FHR) feature extraction and CTG categorization to determine the best precise diagnosis for tracking fetal health during pregnancy. Furthermore, through the utilization of a computer-assisted fetal monitoring system, the FHR patterns can be precisely detected and categorized. OBJECTIVE The goal of this project is to create a reliable feature extraction algorithm for the FHR as well as a systematic and viable classifier for the CTG through the utilization of the MATLAB platform, all the while adhering to the recognized Royal College of Obstetricians and Gynecologists (RCOG) recommendations. METHOD The compiled CTG data from spiky artifacts were cleaned by a specifically created application and compensated for missing data using the guidelines provided by RCOG and the MATLAB toolbox after the implemented data has been processed and the FHR fundamental features have been extracted, for example, the baseline, acceleration, deceleration, and baseline variability. This is followed by the classification phase based on the MATLAB environment. Next, using the guideline provided by the RCOG, the signals patterns of CTG were classified into three categories specifically as normal, abnormal (suspicious), or pathological. Furthermore, to ensure the effectiveness of the created computerized procedure and confirm the robustness of the method, the visual interpretation performed by five obstetricians is compared with the results utilizing the computerized version for the 150 CTG signals. RESULTS The attained CTG signal categorization results revealed that there is variability, particularly a trivial dissimilarity of approximately (+/-4 and 6) beats per minute (b.p.m.). It was demonstrated that obstetricians' observations coincide with algorithms based on deceleration type and number, except for acceleration values that differ by up to (+/-4). DISCUSSION The results obtained based on CTG interpretation showed that the utilization of the computerized approach employed in infirmaries and home care services for pregnant women is indeed suitable. CONCLUSIONS The classification based on CTG that was used for the interpretation of the FHR attribute as discussed in this study is based on the RCOG guidelines. The system is evaluated and validated by experts based on their expert opinions and was compared with the CTG feature extraction and classification algorithms developed using MATLAB.
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Affiliation(s)
- Shahad Al-yousif
- Research Centre, The University of Almashreq, Baghdad, Iraq
- College of Engineering, Department of Electrical & Electronic Engineering, Gulf University, Almasnad, Kingdom of Bahrain
- Department of Medical Instrumentation Engineering Techniques, Dijlah University College, Baghdad, Iraq
| | - Ihab A. Najm
- College of Engineering, Tikrit University, Tikrit, Iraq
| | - Hossam Subhi Talab
- Children Welfare Teaching Hospital, Medical City, (MD, CABP, CAB Neonatology), Baghdad, Iraq
| | - Nourah Hasan Al Qahtani
- Department of Obstetrics and Gynecology, College of Medicine, Imam Abdulrahman Bin Faisal University, Al Dammam, Saudi Arabia
| | - M. Alfiras
- College of Engineering, Department of Electrical & Electronic Engineering, Gulf University, Almasnad, Kingdom of Bahrain
| | - Osama YM Al-Rawi
- College of Engineering, Department of Electrical & Electronic Engineering, Gulf University, Almasnad, Kingdom of Bahrain
| | | | | | - Mohannad Jabbar Mnati
- Department of Electronic Technology, Institute of Technology Baghdad, Middle Technical University, Baghdad, Iraq
| | - Mu’taman Jarrar
- College of Medicine, Imam Abdulrahman Bin Faisal University, Al Dammam, Saudi Arabia
| | - Fahad Ghabban
- Department of Information Systems College of Computer Science and Engineering, Taibah University, Al Madinah Al Munawwarah, Saudi Arabia
| | - Nael A. Al-Shareefi
- College of Biomedical Informatics, University of Information Technology and Communications (UOITC), Baghdad, Iraq
| | - Mustafa Musa Jaber
- Al-Turath University College, Department of Computer Engineering, Baghdad, Iraq
- Department of Medical Instruments Engineering Techniques, Al-Farahidi University, Baghdad, Iraq
| | | | - Nooritawati Md Tahir
- Electrical Engineering Department, College of Engineering, Universiti Teknologi MARA, Shah Alam, Malaysia
- Integrative Pharmacogenomics Institute (iPROMISE), Universiti Teknologi MARA, Shah Alam, Malaysia
- Institute of Big Data Analytics and Artificial Intelligence (IBDAAI), Universiti Teknologi MARA, Shah Alam, Malaysia
| | - Huda T. Najim
- Department of Biomedical Engineering, University of Technology, Baghdad, Iraq
| | - Mayada Taher
- Department of Laser and Optoelectronics Engineering, University of Technology, Baghdad, Iraq
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Accessing Artificial Intelligence for Fetus Health Status Using Hybrid Deep Learning Algorithm (AlexNet-SVM) on Cardiotocographic Data. SENSORS 2022; 22:s22145103. [PMID: 35890783 PMCID: PMC9319518 DOI: 10.3390/s22145103] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 06/25/2022] [Accepted: 07/04/2022] [Indexed: 12/22/2022]
Abstract
Artificial intelligence is serving as an impetus in digital health, clinical support, and health informatics for an informed patient’s outcome. Previous studies only consider classification accuracies of cardiotocographic (CTG) datasets and disregard computational time, which is a relevant parameter in a clinical environment. This paper proposes a modified deep neural algorithm to classify untapped pathological and suspicious CTG recordings with the desired time complexity. In our newly developed classification algorithm, AlexNet architecture is merged with support vector machines (SVMs) at the fully connected layers to reduce time complexity. We used an open-source UCI (Machine Learning Repository) dataset of cardiotocographic (CTG) recordings. We divided 2126 CTG recordings into 3 classes (Normal, Pathological, and Suspected), including 23 attributes that were dynamically programmed and fed to our algorithm. We employed a deep transfer learning (TL) mechanism to transfer prelearned features to our model. To reduce time complexity, we implemented a strategy wherein layers in the convolutional base were partially trained to leave others in the frozen states. We used an ADAM optimizer for the optimization of hyperparameters. The presented algorithm also outperforms the leading architectures (RCNNs, ResNet, DenseNet, and GoogleNet) with respect to real-time accuracies, sensitivities, and specificities of 99.72%, 96.67%, and 99.6%, respectively, making it a viable candidate for clinical settings after real-time validation.
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11
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Ghesquière L, Ternynck C, Sharma D, Hamoud Y, Vanspranghels R, Storme L, Houfflin-Debarge V, De Jonckheere J, Garabedian C. Heart rate markers for prediction of fetal acidosis in an experimental study on fetal sheep. Sci Rep 2022; 12:10615. [PMID: 35739219 PMCID: PMC9226053 DOI: 10.1038/s41598-022-14727-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 06/10/2022] [Indexed: 11/09/2022] Open
Abstract
To overcome the difficulties in interpreting fetal heart rate (FHR), several tools based on the autonomic nervous system and heart rate variability (HRV) have been developed. The objective of this study was to use FHR and HRV parameters for the prediction of fetal hypoxia. It was an experimental study in the instrumented fetal sheep. Repeated umbilical cord occlusions were performed to achieve severe acidosis. Hemodynamic parameters, ECG, and blood gases were analyzed. The variables used were heart rate baseline, HRV analysis (RMSSD, SDNN, LF, HF, HFnu, Fetal Stress Index (FSI), …), and morphological analysis of decelerations. The gold standard used to classify hypoxia was the fetal arterial pH (pH < 7.10). Different multivariable statistical methods (logistic regression and decision trees) were applied for the detection of acidosis. 21 lambs were instrumented. A total of 130 pairs of FHR/fetal pH analysis were obtained of which 29 in the acidosis group and 101 in the non-acidosis group. After logistic regression model with bootstrap resampling and stepwise backward selection, only one variable was selected, FSI. The AUC of FSI alone in this model was 0.81 with a sensitivity of 0.66, specificity of 0.88, PPV of 0.61, and NPV of 0.90 considering a threshold of 68. Decision trees with CHAID and CART algorithms showed a sensitivity of 0.48 and 0.59, respectively, and a specificity of 0.94 for both. All employed methods identified HRV variables as the most predictive of acidosis. The primary variables selected automatically were those from the HRV. Supporting the use of FHRV measures for the screening of fetal acidosis during labour is interesting.
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Affiliation(s)
- Louise Ghesquière
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France.
- Department of Obstetrics, CHU Lille, 59000, Lille, France.
- Department of Obstetrics, CHU Lille, Avenue Eugène Avinée, 59037, Lille Cedex, France.
| | - C Ternynck
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Biostatistics, CHU Lille, 59000, Lille, France
| | - D Sharma
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Pediatric Surgery, CHU Lille, 59000, Lille, France
| | - Y Hamoud
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Obstetrics, CHU Lille, 59000, Lille, France
| | - R Vanspranghels
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Obstetrics, CHU Lille, 59000, Lille, France
| | - L Storme
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Neonatology, CHU Lille, 59000, Lille, France
| | - V Houfflin-Debarge
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Obstetrics, CHU Lille, 59000, Lille, France
| | - J De Jonckheere
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- CHU Lille, CIC-IT 1403, 59000, Lille, France
| | - C Garabedian
- Univ. Lille, CHU Lille, ULR 2694-METRICS-Evaluation des technologies de santé et des pratiques médicales, 59000, Lille, France
- Department of Obstetrics, CHU Lille, 59000, Lille, France
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12
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Silva Neto MGD, Vale Madeiro JPD, Gomes DG. On designing a biosignal-based fetal state assessment system: A systematic mapping study. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2022; 216:106671. [PMID: 35144149 DOI: 10.1016/j.cmpb.2022.106671] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Revised: 01/05/2022] [Accepted: 01/28/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND AND OBJECTIVE The patterns present in biosignals, such as fetal heart rate (FHR), are valuable indicators of fetal well-being. In designing biosignal analysis systems, the variety of approaches and technology usage impairs the decision-making for the fundamental units of the systems. There is a need for an updated overview of studies encompassing the biosignal-based fetal state assessment systems. Therefore, we propose a systematic mapping study to identify and synthesize recent research regarding the building blocks that compose these systems. METHODS We followed well-established guidelines to perform a systematic mapping of studies regarding the building-blocks that compose the fetal state assessment systems and published between January 2016 and January 2021. A search string was determined based on the mapping questions and the PI (population and intervention) divisions. The search string was applied in digital libraries covering the fields of computer science, engineering, and medical informatics. Then, we applied the forward snowballing technique to complement the resulting set. This process resulted in 75 primary studies selected from a total of 871 papers. RESULTS Selected studies were classified according to the publication types, systems design stages, datasets, and predictive capabilities. The results revealed that (i) The majority of the selected studies refer to the method as a type of publication and there is a lack of validation studies; (ii) The CTU-UHB was the most frequent biosignal-based dataset and UCI-CTG was the most frequent feature-based data; (iii) The selected studies made use of the system design stages alone or in a mixed-mode. CONCLUSION The results indicated that the well-established classification models achieved competitive results compared with the state-of-the-art methods in data-constrained system designs. Moreover, we identified the need for validation studies in the clinical environment.
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Affiliation(s)
| | - João Paulo do Vale Madeiro
- Department of Engineering of Teleinformatics, Federal University of Ceará, Ceará, Fortaleza 60455-900, Brazil
| | - Danielo G Gomes
- Department of Engineering of Teleinformatics, Federal University of Ceará, Ceará, Fortaleza 60455-900, Brazil
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13
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Lafuente H, Olaetxea I, Valero A, Alvarez FJ, Izeta A, Jaunarena I, Seifert A. Identification of Hypoxia-Ischemia by chemometrics considering systemic changes of the physiology. IEEE J Biomed Health Inform 2022; 26:2814-2821. [PMID: 35015657 DOI: 10.1109/jbhi.2022.3142190] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Perinatal asphyxia represents a major medical disorder and is related to around a fourth of all neonatal deaths worldwide. Specific thresholds for lactate or pH levels define the gold standard for detecting hypoxic-ischemic events as physiological abnormalities. In contrast to current gold standard, we analyze the systemic picture, represented by the whole set of biochemical parameters from blood gas analysis, by multiparametric machine learning algorithms. In a swine model with 22 objects, we investigate the impact of neonatal hypoxic-ischemic encephalopathy on 18 individual physiological parameters. In a first approach, we study the statistical significance of individual parameters by univariate analysis methods. In a second approach, we take the most relevant parameters as input for the development of predictive models by different hybrid and non hybrid classification algorithms. The predictive power of our multiparametric models outperforms by far the limited performance of pH and lactate as reliable indicators, despite strong correlation with hypoxic-ischemic events. We have been able to detect hypoxic-ischemic events even one hour after the episode, with accuracies close to 100% in contrast to pH or lactate-based diagnosis with 62% and 78%, respectively. By all machine learning algorithms, lactate is recognized as the main contributor due to its longer-term evidence of hypoxia-ischemia episodes. However, substantial improvement of the diagnosis is achieved by predictions based on a systemic picture of different physiological parameters. Our results prove the potential applicability of our method as a support tool for decision-making that will allow obstetricians to identify hypoxic ischemic episodes more accurately during labor.
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14
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Ribeiro M, Monteiro-Santos J, Castro L, Antunes L, Costa-Santos C, Teixeira A, Henriques TS. Non-linear Methods Predominant in Fetal Heart Rate Analysis: A Systematic Review. Front Med (Lausanne) 2021; 8:661226. [PMID: 34917624 PMCID: PMC8669823 DOI: 10.3389/fmed.2021.661226] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Accepted: 11/04/2021] [Indexed: 12/19/2022] Open
Abstract
The analysis of fetal heart rate variability has served as a scientific and diagnostic tool to quantify cardiac activity fluctuations, being good indicators of fetal well-being. Many mathematical analyses were proposed to evaluate fetal heart rate variability. We focused on non-linear analysis based on concepts of chaos, fractality, and complexity: entropies, compression, fractal analysis, and wavelets. These methods have been successfully applied in the signal processing phase and increase knowledge about cardiovascular dynamics in healthy and pathological fetuses. This review summarizes those methods and investigates how non-linear measures are related to each paper's research objectives. Of the 388 articles obtained in the PubMed/Medline database and of the 421 articles in the Web of Science database, 270 articles were included in the review after all exclusion criteria were applied. While approximate entropy is the most used method in classification papers, in signal processing, the most used non-linear method was Daubechies wavelets. The top five primary research objectives covered by the selected papers were detection of signal processing, hypoxia, maturation or gestational age, intrauterine growth restriction, and fetal distress. This review shows that non-linear indices can be used to assess numerous prenatal conditions. However, they are not yet applied in clinical practice due to some critical concerns. Some studies show that the combination of several linear and non-linear indices would be ideal for improving the analysis of the fetus's well-being. Future studies should narrow the research question so a meta-analysis could be performed, probing the indices' performance.
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Affiliation(s)
- Maria Ribeiro
- Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal.,Computer Science Department, Faculty of Sciences, University of Porto, Porto, Portugal
| | - João Monteiro-Santos
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal
| | - Luísa Castro
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal.,School of Health of Polytechnic of Porto, Porto, Portugal
| | - Luís Antunes
- Institute for Systems and Computer Engineering, Technology and Science, Porto, Portugal.,Computer Science Department, Faculty of Sciences, University of Porto, Porto, Portugal
| | - Cristina Costa-Santos
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal
| | - Andreia Teixeira
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal.,Instituto Politécnico de Viana do Castelo, Viana do Castelo, Portugal
| | - Teresa S Henriques
- Centre for Health Technology and Services Research, Faculty of Medicine University of Porto, Porto, Portugal.,Department of Community Medicine, Information and Health Decision Sciences, Faculty of Medicine, University of Porto, Porto, Portugal
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15
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Zeng R, Lu Y, Long S, Wang C, Bai J. Cardiotocography signal abnormality classification using time-frequency features and Ensemble Cost-sensitive SVM classifier. Comput Biol Med 2021; 130:104218. [PMID: 33484945 DOI: 10.1016/j.compbiomed.2021.104218] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 01/10/2021] [Accepted: 01/11/2021] [Indexed: 01/14/2023]
Abstract
BACKGROUND Cardiotocography (CTG) signal abnormality classification plays an important role in the diagnosis of abnormal fetuses. This classification problem is made difficult by the non-stationary nature of CTG and the dataset imbalance. This paper introduces a novel application of Time-frequency (TF) features and Ensemble Cost-sensitive Support Vector Machine (ECSVM) classifier to tackle these problems. METHODS Firstly, CTG signals are converted into TF-domain representations by Continuous Wavelet Transform (CWT), Wavelet Coherence (WTC), and Cross-wavelet Transform (XWT). From these representations, a novel image descriptor is used to extract the TF features. Then, the linear feature is derived from the time-domain representation of the CTG signal. The linear and TF features are fed to the ECSVM classifier for prediction and classification of fetal outcome. RESULTS The TF features show the significant difference (p-value<0.05) in distinguishing abnormal CTG signals, but not for traditional nonlinear features. In ECSVM abnormality classification, using only linear features, the sensitivity, specificity, and quality index are 59.3%, 78.3%, and 68.1%, respectively, whereas more effective results (sensitivity: 85.2%, specificity: 66.1%, and quality index: 75.0%) are obtained using a combination of linear and TF features, with a performance improvement index of 10.1%. Especially, the area under the receiver operating characteristic curve (0.77 vs. 0.64) is significantly increased with the ECSVM vs. SVM. CONCLUSION Our method can greatly improve the classification results, especially for sensitivity. It improves the true positive rate of CTG abnormality classification and reduces the false positive rate, which may help detect and treat abnormal fetuses during labor.
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Affiliation(s)
- Rongdan Zeng
- Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Yaosheng Lu
- Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Shun Long
- Department of Computer Science, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Chuan Wang
- Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China
| | - Jieyun Bai
- Department of Electronic Engineering, College of Information Science and Technology, Jinan University, Guangzhou, China.
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16
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Das S, Obaidullah SM, Santosh KC, Roy K, Saha CK. Cardiotocograph-based labor stage classification from uterine contraction pressure during ante-partum and intra-partum period: a fuzzy theoretic approach. Health Inf Sci Syst 2020; 8:16. [PMID: 32257127 PMCID: PMC7105557 DOI: 10.1007/s13755-020-00107-7] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2019] [Accepted: 03/13/2020] [Indexed: 12/01/2022] Open
Abstract
Computerized techniques for Cardiotocograph (CTG) based labor stage classification would support obstetrician for advance CTG analysis and would improve their predictive power for fetal heart rate (FHR) monitoring. Intrapartum fetal monitoring is necessary as it can detect the event, which ultimately leads to hypoxic ischemic encephalopathy, cerebral palsy or even fetal demise. To bridge this gap, in this paper, we propose an automated decision support system that will help the obstetrician identify the status of the fetus during ante-partum and intra-partum period. The proposed algorithm takes 30 min of 275 Cardiotocograph data and applies a fuzzy-rule based approach for identification and classification of labor from 'toco' signal. Since there is no gold standard to validate the outcome of the proposed algorithm, the authors used various statistical means to establish the cogency of the proposed algorithm and the degree of agreement with visual estimation were using Bland-Altman plot, Fleiss kappa (0.918 ± 0.0164 at 95% CI) and Kendall's coefficient of concordance (W = 0.845). Proposed method was also compared against some standard machine learning classifiers like SVM, Random Forest and Naïve Bayes using weighted kappa (0.909), Bland-Altman plot (Limits of Agreement 0.094 to 0.0155 at 95% CI) and AUC-ROC (0.938). The proposed algorithm was found to be as efficient as visual estimation compared to the standard machine learning algorithms and thus can be incorporated into the automated decision support system.
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Affiliation(s)
- Sahana Das
- Department of Computer Science, West Bengal State University, Kolkata, 700124 West Bengal India
| | - Sk Md Obaidullah
- Department of Computer Science & Engineering, Aliah University, Kolkata, 700156 India
| | - K. C. Santosh
- Department of Computer Science, The University of South Dakota, Vermillion, SD USA
| | - Kaushik Roy
- Department of Computer Science, West Bengal State University, Kolkata, 700124 West Bengal India
| | - Chanchal Kumar Saha
- Department of Obstetrics & Gynecology, Biraj Mohini Matri-Sadan & Hospital, Kolkata, West Bengal 700122 India
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17
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Personalized Body Constitution Inquiry Based on Machine Learning. JOURNAL OF HEALTHCARE ENGINEERING 2020; 2020:8834465. [PMID: 33274038 PMCID: PMC7676967 DOI: 10.1155/2020/8834465] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Accepted: 10/30/2020] [Indexed: 02/01/2023]
Abstract
Background Body constitution (BC) is the abstract concept indicating the state of a person's health in Traditional Chinese Medicine (TCM). The doctor identifies the body constitution of the patient through inspection and inquiry. Previous research simulates doctors to identify BC types according to a patient's objective physical indicators. However, the lack of subjective feeling information can reduce the accuracy of the machine to imitate the doctor's diagnosis. The Constitution in Chinese Medicine Questionnaire (CCMQ) is used to collect subjective information but suffers from low acquisition efficiency. Methods This paper presents a personalized body constitution inquiry method based on a machine learning technique. It employs a random generator, a feature extractor, and a classifier to simulate the doctor inquiry and generate a personalized questionnaire. Specifically, the feature extractor evaluates and sorts the question of the constitution in the CCMQ based on the recognition results of the tongue coating image of patients. The sorted questions and relevant BC label are inputted into the classifier; the best questions are screened out for patients. Results The experimental results show that our method can select personalized questions from the CCMQ for the patients, significantly reducing the time and the number of questions to answer. It also improves the accuracy of recognizing BC. Compared with the CCMQ, patients had 68.3% fewer questions to answer and the time occupied by answering is reduced by 80.3%. Conclusions The proposed method can simulate the doctor's inquiry and pick out personalized questions for patients. It can act as auxiliary diagnosis tools to collect subjective patient feelings and help make further judgments on the patient's BC types.
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18
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Toğaçar M, Ergen B, Cömert Z. BrainMRNet: Brain tumor detection using magnetic resonance images with a novel convolutional neural network model. Med Hypotheses 2019; 134:109531. [PMID: 31877442 DOI: 10.1016/j.mehy.2019.109531] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 12/11/2019] [Accepted: 12/14/2019] [Indexed: 12/17/2022]
Abstract
A brain tumor is a mass that grows unevenly in the brain and directly affects human life. This mass occurs spontaneously because of the tissues surrounding the brain or the skull. Surgical methods are generally preferred for the treatment of the brain tumor. Recently, models of deep learning in the diagnosis and treatment of diseases in the biomedical field have gained intense interest. In this study, we propose a new convolutional neural network model named BrainMRNet. This architecture is built on attention modules and hypercolumn technique; it has a residual network. Firstly, image is preprocessed in BrainMRNet. Then, this step is transferred to attention modules using image augmentation techniques for each image. Attention modules select important areas of the image and the image is transferred to convolutional layers. One of the most important techniques that the BrainMRNet model uses in the convolutional layers is hypercolumn. With the help of this technique, the features extracted from each layer of the BrainMRNet model are retained by the array structure in the last layer. The aim is to select the best and the most efficient features among the features maintained in the array. Accessible magnetic resonance images were used to detect brain tumor with the BrainMRNet model. BrainMRNet model is more successful than the pre-trained convolutional neural network models (AlexNet, GoogleNet, VGG-16) used in this study. The classification success achieved with the BrainMRNet model was 96.05%.
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Affiliation(s)
- Mesut Toğaçar
- Department of Computer Technology, Fırat University, Elazig, Turkey.
| | - Burhan Ergen
- Department of Computer Engineering, Faculty of Engineering, Fırat University, Elazig, Turkey.
| | - Zafer Cömert
- Department of Software Engineering, Faculty of Engineering, Samsun University, Samsun, Turkey.
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19
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Application of breast cancer diagnosis based on a combination of convolutional neural networks, ridge regression and linear discriminant analysis using invasive breast cancer images processed with autoencoders. Med Hypotheses 2019; 135:109503. [PMID: 31760247 DOI: 10.1016/j.mehy.2019.109503] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Revised: 11/09/2019] [Accepted: 11/16/2019] [Indexed: 12/13/2022]
Abstract
Invasive ductal carcinoma cancer, which invades the breast tissues by destroying the milk channels, is the most common type of breast cancer in women. Approximately, 80% of breast cancer patients have invasive ductal carcinoma and roughly 66.6% of these patients are older than 55 years. This situation points out a powerful relationship between the type of breast cancer and progressed woman age. In this study, the classification of invasive ductal carcinoma breast cancer is performed by using deep learning models, which is the sub-branch of artificial intelligence. In this scope, convolutional neural network models and the autoencoder network model are combined. In the experiment, the dataset was reconstructed by processing with the autoencoder model. The discriminative features obtained from convolutional neural network models were utilized. As a result, the most efficient features were determined by using the ridge regression method, and classification was performed using linear discriminant analysis. The best success rate of classification was achieved as 98.59%. Consequently, the proposed approach can be admitted as a successful model in the classification.
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