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Krishtalik LI. The medium reorganization energy for the charge transfer reactions in proteins. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011; 1807:1444-56. [DOI: 10.1016/j.bbabio.2011.07.002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2011] [Revised: 06/30/2011] [Accepted: 07/04/2011] [Indexed: 10/18/2022]
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Zhao K, Bai W, Mi H. Dielectric spectroscopy of Anabaena 7120 protoplast suspensions. Bioelectrochemistry 2006; 69:49-57. [PMID: 16431165 DOI: 10.1016/j.bioelechem.2005.10.004] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2005] [Revised: 10/19/2005] [Accepted: 10/31/2005] [Indexed: 11/19/2022]
Abstract
The dielectric spectroscopy of Anabaena 7120 protoplast suspensions has been investigated over the frequency range of 40 Hz-110 MHz. The protoplast suspensions showed a complicated dielectric dispersion consisting of at least four distinct sub-dispersions with the increasing frequencies due to the Maxwell-Wagner interfacial polarization. The double-shell model, in which an equivalent shell of thylakoid was assumed inside the cytoplasm, was adopted to describe the special morphology of the protoplast. Under the assumption that the conductivity of plasmalemma was negligible and the conductivity of the equivalent shell was 0.1 microS/cm, we attempted to estimate the dielectric properties of various protoplast components by fitting theoretical curve to experimental data. The relative permittivity of the plasmalemma epsilon(mem) was estimated to be 6.5+/-0.5, and the permittivity of the equivalent shell of thylakoid epsilon(thy) was estimated to be about 3.2+/-0.2. The permittivity epsilon(cyt) and conductivity kappa(cyt) of the cytoplasm were estimated to be 60 and 0.88+/-0.11 mS/cm, respectively. The permittivity epsilon(nuc) and conductivity kappa(nuc) of the nucleoplasmic region were determined to be 100 and 0.13+/-0.02 mS/cm, respectively.
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Affiliation(s)
- Kongshuang Zhao
- Department of Chemistry, Beijing Normal University, 100875, Beijing, China.
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Clausen J, Junge W. Search for intermediates of photosynthetic water oxidation. PHOTOSYNTHESIS RESEARCH 2005; 84:339-45. [PMID: 16049795 DOI: 10.1007/s11120-005-3480-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2004] [Accepted: 03/08/2005] [Indexed: 05/03/2023]
Abstract
Photosystem II of cyanobacteria and plants incorporates the catalytic centre of water oxidation. Powered and clocked by quanta of light the centre accumulates four oxidising equivalents before oxygen is released. The first three oxidising equivalents are stored on the Mn(4)Ca-cluster, raising its formal oxidation state from S0 to S3 and the third on YZ, producing S3 YZ ox. From there on water oxidation proceeds in what appears as a single reaction step (S3 YZ ox(H2O)2 <==>O2 + 4H+ + S0. Intermediate oxidation products of bound water had not been detected, until our recent report on the stabilisation of such an intermediate by high oxygen pressure (NATURE 430, 2004, 480-483). Based on the oxygen titration (half-point 2.3 bar) the standard free-energy profile of a reaction sequence with a single intermediate was calculated. It revealed a rather small difference (-3 kJ mol-1) between the starting state [S3YZ OX(H2O2) and the product state S0YZ + O2 + 4H+ . Here we describe the tests for side effects of exposing core particles to high oxygen pressure. We found the reduction of P680 +* in ns and the reduction/dismutation of quinones at the acceptor side of PSII both unaffected, and the inhibition of the oxygen evolving reaction by exposure to high O2-pressure was fully reversible by decompression to atmospheric conditions.
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Cherepanov DA, Krishtalik LI, Mulkidjanian AY. Photosynthetic electron transfer controlled by protein relaxation: analysis by Langevin stochastic approach. Biophys J 2001; 80:1033-49. [PMID: 11222272 PMCID: PMC1301303 DOI: 10.1016/s0006-3495(01)76084-5] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
Abstract
Relaxation processes in proteins range in time from picoseconds to seconds. Correspondingly, biological electron transfer (ET) could be controlled by slow protein relaxation. We used the Langevin stochastic approach to describe this type of ET dynamics. Two different types of kinetic behavior were revealed, namely: oscillating ET (that could occur at picoseconds) and monotonically relaxing ET. On a longer time scale, the ET dynamics can include two different kinetic components. The faster one reflects the initial, nonadiabatic ET, whereas the slower one is governed by the medium relaxation. We derived a simple relation between the relative extents of these components, the change in the free energy (DeltaG), and the energy of the slow reorganization Lambda. The rate of ET was found to be determined by slow relaxation at -DeltaG < or = Lambda. The application of the developed approach to experimental data on ET in the bacterial photosynthetic reaction centers allowed a quantitative description of the oscillating features in the primary charge separation and yielded values of Lambda for the slower low-exothermic ET reactions. In all cases but one, the obtained estimates of Lambda varied in the range of 70-100 meV. Because the vast majority of the biological ET reactions are only slightly exothermic (DeltaG > or = -100 meV), the relaxationally controlled ET is likely to prevail in proteins.
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Affiliation(s)
- D A Cherepanov
- Division of Biophysics, Faculty of Biology/Chemistry, University of Osnabrück, D-49069 Osnabrück, Germany
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Krishtalik LI, Topolev VV. Effects of medium polarization and pre-existing field on activation energy of enzymatic charge-transfer reactions. BIOCHIMICA ET BIOPHYSICA ACTA 2000; 1459:88-105. [PMID: 10924902 DOI: 10.1016/s0005-2728(00)00116-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
Abstract
The highly organized spatial structure of proteins' polar groups results in the existence of a permanent intraprotein electric field and in protein's weak dielectric response, i.e. its low dielectric constant. The first factor affects equilibrium free energy gap of a charge-transfer reaction, the second (medium polarization effect) influences both equilibrium and non-equilibrium (reorganization) energies, decreasing the latter substantially. In the framework of the rigorous 'fixed-charge-density' formalism, the medium polarization component of the reaction activation energy has been calculated, both for the activation energy of the elementary act proper, and the effective activation energy accounting for the charges' transfer from water into a low-dielectric structureless medium. In all typical cases of reactions, the energy spent for charge transfer from water into structureless 'protein' is larger than the gain in activation energy due to the protein's low reorganization energy. Therefore, the low dielectric constant of proteins is not sufficient to ensure their high catalytic activity, and an additional effect of the pre-existing intraprotein electric field, compensating for an excessive charging energy, is necessary. Only a combined action of low reorganization energy and pre-existing electric field provides proteins with their high catalytic activity. The dependence of activation energy on the globule geometry has been analyzed. It is shown that, for each reaction, an optimum set of geometric parameters exists. For five hydrolytic enzymes, the optimum globule radii have been calculated using the experimental geometry of their active sites. The calculated radii agree satisfactorily with the real sizes of these macromolecules, both by absolute and by relative values.
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Affiliation(s)
- L I Krishtalik
- A.N. Frumkin Institute of Electrochemistry, Russian Academy of Sciences, Moscow.
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Mulkidjanian AY. Photosystem II of green plants: on the possible role of retarded protonic relaxation in water oxidation1. BIOCHIMICA ET BIOPHYSICA ACTA 1999; 1410:1-6. [PMID: 10076010 DOI: 10.1016/s0005-2728(98)00174-1] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Photosystem II (PSII) of green plants and cyanobacteria uses energy of light to oxidize water and to produce oxygen. The available estimates of the oxidizing potential of P680+, the primary donor of PSII, yield value of about 1.15 V. Two main factors are suggested to add up and engender this high oxidizing potential, namely: (1) the electrostatic influence dominated by Arg-181 of the D2 subunit which elevates the oxidizing potential of P680+ up to 1 V, some 0.1 V above the Em value of a hydrogen-bonded chlorophyll a; and (2) the dynamic component of 0.10-0.15 V due to the experimentally demonstrated retarded protonic relaxation at the P680 site.
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Affiliation(s)
- AY Mulkidjanian
- Division of Biophysics, Faculty of Biology/Chemistry, University of Osnabruck, Barbarastr. 11, D-49069, Osnabruck, Germany
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Paillotin G, Leibl W, Gapiński J, Breton J, Dobek A. Light gradients in spherical photosynthetic vesicles. Biophys J 1998; 75:124-33. [PMID: 9649373 PMCID: PMC1299685 DOI: 10.1016/s0006-3495(98)77500-9] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023] Open
Abstract
Light-gradient photovoltage measurements were performed on EDTA-treated thylakoids and on osmotically swollen thylakoids (blebs), both of spherical symmetry but of different sizes. In the case of EDTA vesicles, a negative polarity (due to the normal light gradient) was observed in the blue range of the absorption spectrum, and a positive polarity, corresponding to an inverse light gradient, was observed at lambda = 530 and lambda = 682 nm. The sign of the photovoltage polarity measured in large blebs (swollen thylakoids) is the same as that obtained for whole chloroplasts, although differences in the amplitudes are observed. An approach based on the use of polar coordinates was adapted for a theoretical description of these membrane systems of spherical symmetry. The light intensity distribution and the photovoltage in such systems were calculated. Fits to the photovoltage amplitudes, measured as a function of light wavelength, made it possible to derive the values of the dielectric constant of the protein, epsilons = 3, and the refractive index of the photosynthetic membrane for light propagating perpendicular and parallel to the membrane surface, nt = 1.42 and nn = 1.60, respectively. The latter two values determine the birefringence of the biological membrane, Deltan = nn - nt = 0.18.
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The influence of structural-dynamic organization of RC from purple bacterium rhodobacter sphaeroides on picosecond stages of photoinduced reactions. BIOCHIMICA ET BIOPHYSICA ACTA 1998; 1364:361-72. [PMID: 9630723 DOI: 10.1016/s0005-2728(98)00012-7] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Effects of the hydrogen bond network on the rate constants of energy migration (km), charge separation (ke), electron transfer to QA (kQ) and P+I- recombination in RC of Rhodobacter sphaeroides were analysed in control and modified RC preparations at different temperatures. Modification of RC were made by the addition of 40% v/v DMSO. The rate constants km, ke, kQ were evaluated from pump-and-probe measurements of the absorption difference kinetics at 665 nm corresponding to BPhL- formation and subsequent electron transfer to QA. For the investigation of P+I- recombination a primary quinone acceptor was pre-reduced in the dark by adding of 1 mg/ml of dithionite and 1 mM sodium ascorbate. Recombination kinetics were measured at 665 and 870 nm. The numerical analysis of the temperature dependence of ke and kQ was performed on the basis of the model proposed by Kakitani and Kakitani (T. Kakitani and H. Kakitani (1981), Biochim. Biophys. Acta, 635, 498-514). It was found that: (a) in control samples the molecular rate constants km, ke and kQ were about (3.4 ps)-1, (4.5 ps)-1 and (200 ps)-1, respectively; (b) under modification by DMSO these rates decrease up to (5.3 ps)-1, (10.3 ps)-1 and (500 ps)-1, respectively; (c) as the temperature drops from 300 K to 77 K the rate constant km decreases by 1.8 times in control and by 3.2 times in modified samples. In contrast to the observed km changes the increase in ke and kQ values by 2 and more times under cooling was found in control and modified RC; (d) in control preparations with QA acceptor pre-reduced in the dark the lowering of the temperature caused the increase in the time of P+I- recombination from 10 to 20 ns. After DMSO modification the kinetics of charge recombination in RC was biexponential at room temperature with tau=10 ns and tau1=0.8 ns, and at 77 K with tau=20 ns and tau1=0.6 ns, correspondingly. The results obtained reveal that in RC isolated from Rb. sphaeroides the processes of energy migration, charge separation, electron transfer to QA and ion-radical pair P+I- recombination depend on the state of hydrogen bonds of water-protein structure. Fast relaxation processes in RC structure including polarization of H-containing molecules in the surrounding of electron carriers can accept electron energy dissipated at the initial steps of energy and electron transfer. Copyright 1998 Elsevier Science B.V. All rights reserved.
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Vasil'ev S, Bergmann A, Redlin H, Eichler HJ, Renger G. On the role of exchangeable hydrogen bonds for the kinetics of P680+. QA−. formation and P680+. Pheo−. recombination in photosystem II. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1996. [DOI: 10.1016/0005-2728(96)00027-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Iwaki M, Kumazaki S, Yoshihara K, Erabi T, Itoh S. ΔG0 Dependence of the Electron Transfer Rate in the Photosynthetic Reaction Center of Plant Photosystem I: Natural Optimization of Reaction between Chlorophyll a (A0) and Quinone. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp960221k] [Citation(s) in RCA: 55] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Masayo Iwaki
- National Institute for Basic Biology, Myodaiji, Okazaki 444, Institute for Molecular Science, Myodaiji, Okazaki 444, and Faculty of Engineering, Tottori University, Tottori 680, Japan
| | - Shigeichi Kumazaki
- National Institute for Basic Biology, Myodaiji, Okazaki 444, Institute for Molecular Science, Myodaiji, Okazaki 444, and Faculty of Engineering, Tottori University, Tottori 680, Japan
| | - Keitaro Yoshihara
- National Institute for Basic Biology, Myodaiji, Okazaki 444, Institute for Molecular Science, Myodaiji, Okazaki 444, and Faculty of Engineering, Tottori University, Tottori 680, Japan
| | - Tatsuo Erabi
- National Institute for Basic Biology, Myodaiji, Okazaki 444, Institute for Molecular Science, Myodaiji, Okazaki 444, and Faculty of Engineering, Tottori University, Tottori 680, Japan
| | - Shigeru Itoh
- National Institute for Basic Biology, Myodaiji, Okazaki 444, Institute for Molecular Science, Myodaiji, Okazaki 444, and Faculty of Engineering, Tottori University, Tottori 680, Japan
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Krishtalik LI. Intramembrane electron transfer: processes in the photosynthetic reaction center. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 1996. [DOI: 10.1016/0005-2728(95)00135-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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