Physicochemical studies on the minicircular DNA in Escherichia coli 15

The nature of the damage to Escherichia coli DNA induced by gamma-irradiation

Quantitative studies of the number of gamma-induced single-strand breaks (SSBs) and enzyme-labile sites (ELSs) were performed using the model of Col E1 plasmids, which undergo transition from the covalently closed form (CCF) into the open circular form (OCF) during gamma-irradiation of the plasmid-bearing strain E. coli JC 411. By adding 0.5 MEDTA the repair endonucleases of the cell, which effect the transition of ELSs into SSBs during and after gamma-irradiation, were totally inhibited. It was found thless than 15 per cent of the number of gamma-induced lesions are primarily induced SSBs. About the saditions of direct radiation damage. The conclusions are that (1) the contribution of the direct radiation effect in the cell is greater than that of the indirect effect; (2) the main type of gamma-induced lesions are the ELSs (most of which--more than 75 per cent--are alkali-stable; (3) the enzymatic incision of gamma-induced ELSs into SSBs is effected very quickly, mainly during irradiation; and (4) 0.5 MEDTA is a universal inhibitor of repair processes in cell, including the action of N-glycosidases and endonucleases.

Mechanism of the radioprotecting action of chemical compounds on Escherichia coli cells

The effect of radioprotection of indolylalkylamines (5-methoxytryptamine) and aminothiols (cysteamine) on E. coli cells is practically absent if the cells have genetic defects in the repair systems. This means that the explanation of radioprotection by scavenging of free radicals is invalid and that specific repair mechanisms may be involved. In order to explain the radioprotective mechanism it was suggested that the radioprotectors interact with the damaged sites in DNA so that they become partly screened from repairing endonucleases. Under these conditions the reduction of incision rate results in diminished enzymatic induction of lethal double-strand breaks in DNA, this being important only in wild type cells. To prove this hypothesis an experimental procedure was developed using bacterial cells carrying plasmids (ColE1). This procedure enabled to determine the in vivo rate of enzymatic incision of gamma-sites. It was found that the protectors did not change the total amount of gamma-damages in DNA but reduced the rate of enzymatic incision.

Characterization and replication control of plasmids from Enterobacter cloacae DF 13

It has been shown previously that Enterobacter clocacae DF13 harbours at least five different size classes of plasmids. A 45 x 10(6)-Mr self-transmissible R factor determining resistance against tetracyclin, sulfanilamide, streptomycin and chloramphenicol, a 6.0 x 10(6)-Mr bacteriocinogenic factor without sex factors activity and cryptic plasmids in the size classes of Mr 1.3 x10(6), 2.8 x 10(6) and 8.0 x 10(6) respectively. The present work deals with the determination of the homogeneity and molecular relationship of 1.3 x 10(6)-Mr (mini) and 2.8 x 10(6)-Mr (midi) cryptic plasmids and the 6.0 x 10(6)-Mr (maxi) bacteriocinogenic factor, their kinetics of replication and their replication control in response to inhibition of protein synthesis.

Plasmids of Shigella dysenteriae Y6R: a defective Col factor

The six plasmids of Shigella dysenteriae Y6R were separated by sucrose gradients into five fractions containing deoxyribonucleic acid (DNA), having contour lengths (expressed in units equal to the fraction of the length of the replicative form of phiX174), respectively, of 0.29, 0.35, 0.74, 1.08, and a mixture of 5.7 and 7.2. DNA-DNA hybridization on nitrocellulose filters between each of the plasmids and between plasmid-free S. dysenteriae Y6R host DNA and plasmids was investigated. There was a high degree of homology between the 0.29- and 0.35-unit plasmids. No significant homology was found between any of the other pairs of plasmids. Homologous DNA to the extent of 2.4 copies of the 1.08-unit plasmid was found in the host genome. Homology between the other plasmids and the host genome is very slight, but appears to be significant. About 0.7 of the 1.08-unit plasmid is homologous to the ColE1 façtor of Escherichia coli JC411 (ColE1). This plasmid may be defective ColE1 factor with the immunity function intact, but with a defect in the gene leading to the production of active colicin. Electron microscope examination of heteroduplexes formed between the two smallest plasmids and between the 1.08-unit plasmid and the ColE1 factor yielded independent determinations of the extent of homology in agreement with the values determined by hybridization. In the latter case, two nonhomologous regions of substitution of DNA were detected.

Extrachromosomal deoxyribonucleic acid in different enterobacteria

Eighty-seven different enterobacteria and pseudomonas strains were examined for the presence of extrachromosomal deoxyribonucleic acid (DNA). Thirty-four strains contained closed circular DNA by the ethidium bromide CsCl density technique. Extrachromosomal DNA was most frequent in Escherichia and Klebsiella strains. The extrachromosomal DNA was isolated and characterized by analytical ultracentrifugation and electron microscopy. All the extrachromosomal DNA-containing bacteria contained circular DNA molecules of small size (0.5-4 mum). Most of these bacteria also contained larger circles (20-40 mum). The number of different size classes of circular DNA in each strain varied from one to five. The buoyant density of the extrachromosomal DNA ranged from 1.692 to 1.721 g/cm(3). Many bacteria contained extrachromosomal DNA of more than one density.

Light-scattering studies on deoxyribonucleic acid flexibility. The solution properties of a small circular deoxyribonucleic acid molecule

Previous investigations on the persistence length of DNA in solution have revealed large discrepancies between hydrodynamic results and those from light-scattering techniques which have potentially a greater resolving power. The information obtained from experiments on a small circular DNA molecule has resolved these discrepancies. The non-superhelical circular double-stranded DNA molecule from bacteriophage [unk]X174-infected cells is small enough to permit accurate light-scattering extrapolations, and its solutions have negligible anisotropy. The persistence length obtained from experimental investigations on this molecule is comparable with that obtained by hydrodynamic techniques, even with variation of the excluded-volume factor.

Isolation of minicircular deoxyribonucleic acids from wild strains of Escherichia coli and their relationship to other bacterial plasmids

Supercoiled minicircular deoxyribonucleic acid (DNA) molecules with molecular weights of 1.8 x 10(6) and 2.3 x 10(6) have been isolated from two wild strains of Escherichia coli. DNA-DNA hybridization experiments indicate that these DNA molecules share extended homologies with the minicircular DNA of E. coli 15. The DNA of the colicinogenic factor E1 (ColE1) also hybridizes to a large extent with minicircular DNA of E. coli 15. In contrast, no hybridization could be detected with various large extrachromosomal DNA elements such as the colicinogenic factor V (ColV), the beta-hemolytic factor (Hly), or the P1-like DNA of E. coli 15. Two different insertion DNA species of E. coli integrated into lambdadg-DNA (lambdadg UP(in) 128, lambdadg UP(in) 308) do not show any annealing with minicircular DNA of E. coli 15.

Bacteriophage T7 DNA replication: a linear replicating intermediate (gradient centrifugation-electron microscopy-E. coli-DNA partial denaturation)

The T7 chromosome in the first round of replication is a Y-shaped DNA rod. Thus, it differs from previously observed bacterial and viral replicating chromosomes that are circular.

The rolling circle for phiX DNA replication. II. Synthesis of single-stranded circles

varphiX-infected cells have been allowed to incorporate tritiated thymidine late in the phage life cycle when single-stranded circles are the product of DNA synthesis. Virtually all of the radioactivity is recovered in a continuum of actively replicating viral DNA molecules. These molecules are termed rolling circle intermediates because they are characterized by three structural properties. They possess positive strands that are longer than the length of a mature viral genome, and negative strands that are covalently closed single-stranded circles. The 3' termini of the long positive strands lie upon the template rings, while the 5' ends are free in solution. From these experimental data, the basic mode of synthesis is deduced to involve the continuous elongation of the open positive strand by endless copying around the circular negative strand template. As new bases are added to the template-bound (3') end of the positive strand, the distal (5') end is displaced from the template ring as a single-stranded tail of increasing length. It is the tail which serves as the source of material for progeny chromosomes. These data confirm our characterization of this varphiX intermediate, which initially was based only on the possession of long positive strands, and extend this characterization to include experimental statements about the circular nature of the template DNA strand, and the 5' to 3' direction of polynucleotide chain growth within the intermediate. Moreover, the description can now be applied to all of the molecules which acquire label during a pulse.