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For: Kroon-Batenburg LM, Kroon J, Leeflang BR. Conformational analysis of methyl beta-cellobioside by ROESY NMR spectroscopy and MD simulations in combination with the CROSREL method. Carbohydr Res 1993;245:21-42. [PMID: 8358749 DOI: 10.1016/0008-6215(93)80057-l] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Number Cited by Other Article(s)
1
Feng T, Li M, Zhou J, Zhuang H, Chen F, Ye R, Campanella O, Fang Z. Application of molecular dynamics simulation in food carbohydrate research—a review. INNOV FOOD SCI EMERG 2015. [DOI: 10.1016/j.ifset.2015.06.015] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
2
Yan S, Yao L. DFT application in conformational determination of cellobiose. Carbohydr Res 2015;404:117-23. [DOI: 10.1016/j.carres.2014.12.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2014] [Revised: 12/08/2014] [Accepted: 12/16/2014] [Indexed: 11/26/2022]
3
Bell NGA, Rigg G, Masters S, Bella J, Uhrín D. Detecting low-level flexibility using residual dipolar couplings: a study of the conformation of cellobiose. Phys Chem Chem Phys 2014;15:18223-34. [PMID: 24064673 DOI: 10.1039/c3cp52987h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
4
Toukach FV, Ananikov VP. Recent advances in computational predictions of NMR parameters for the structure elucidation of carbohydrates: methods and limitations. Chem Soc Rev 2013;42:8376-415. [DOI: 10.1039/c3cs60073d] [Citation(s) in RCA: 91] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
5
French AD, Johnson GP, Cramer CJ, Csonka GI. Conformational analysis of cellobiose by electronic structure theories. Carbohydr Res 2012;350:68-76. [PMID: 22265378 DOI: 10.1016/j.carres.2011.12.023] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2011] [Revised: 12/21/2011] [Accepted: 12/22/2011] [Indexed: 11/29/2022]
6
Landström J, Widmalm G. Glycan flexibility: insights into nanosecond dynamics from a microsecond molecular dynamics simulation explaining an unusual nuclear Overhauser effect. Carbohydr Res 2010;345:330-3. [DOI: 10.1016/j.carres.2009.11.003] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2009] [Revised: 11/02/2009] [Accepted: 11/03/2009] [Indexed: 11/24/2022]
7
Shen T, Langan P, French AD, Johnson GP, Gnanakaran S. Conformational Flexibility of Soluble Cellulose Oligomers: Chain Length and Temperature Dependence. J Am Chem Soc 2009;131:14786-94. [DOI: 10.1021/ja9034158] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Wakelyn P, Bertoniere N, French A, Thibodeaux D, Triplett B, Rousselle MA, Goynes W, Edwards J, Hunter L, McAlister D, Gamble G. Cotton Fibers. HANDBOOK OF FIBER CHEMISTRY, THIRD EDITION 2006. [DOI: 10.1201/9781420015270.ch9] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
9
Stepwise hydration of cellobiose by DFT methods: 1. Conformational and structural changes brought about by the addition of one to four water molecules. ACTA ACUST UNITED AC 2006. [DOI: 10.1016/j.theochem.2006.07.024] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
10
Bernabé M, Jiménez-Barbero J, Planas A. The Conformation of the Tri- and Tetrasaccharide Produced in the Hydrolysis of Barley Glucan with the Enzyme Endo-1,3-1,4-β-glucan 4-Glucanohydrolase fromBacillus Licheniformis. J Carbohydr Chem 2006. [DOI: 10.1080/07328309408011681] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
11
Landersjö C, Stevensson B, Eklund R, Ostervall J, Söderman P, Widmalm G, Maliniak A. Molecular conformations of a disaccharide investigated using NMR spectroscopy. JOURNAL OF BIOMOLECULAR NMR 2006;35:89-101. [PMID: 16791735 DOI: 10.1007/s10858-006-9006-0] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2005] [Revised: 02/14/2006] [Accepted: 03/10/2006] [Indexed: 05/10/2023]
12
Engelsen SB, Pérez S, Braccini I, Du Penhoat CH. Internal motions of carbohydrates as probed by comparative molecular modeling and nuclear magnetic resonance of ethyl β-lactoside. J Comput Chem 2004. [DOI: 10.1002/jcc.540160905] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
13
Keglević D, Kojić-Prodić B, Tomisić ZB. Synthesis and conformational analysis of the repeating units of bacterial spore peptidoglycan. Carbohydr Res 2003;338:1299-308. [PMID: 12791283 DOI: 10.1016/s0008-6215(03)00067-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
14
Lommerse JPM, van Rooijen JJM, Kroon-Batenburg LMJ, Kamerling JP, Vliegenthart JFG. Conformational analysis of two xylose-containing N-glycans in aqueous solution by using 1H NMR ROESY and NOESY spectroscopy in combination with MD simulations. Carbohydr Res 2002;337:2279-99. [PMID: 12433493 DOI: 10.1016/s0008-6215(02)00212-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
15
Mackie ID, Röhrling J, Gould RO, Pauli J, Jäger C, Walkinshaw M, Potthast A, Rosenau T, Kosma P. Crystal and molecular structure of methyl 4-O-methyl-beta-D-glucopyranosyl-(1-->4)-beta-D-glucopyranoside. Carbohydr Res 2002;337:161-6. [PMID: 11814448 DOI: 10.1016/s0008-6215(01)00299-3] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
16
Faber EJ, van Kuik JA, Kamerling JP, Vliegenthart JFG. Modeling of the structure in aqueous solution of the exopolysaccharide produced by Lactobacillus helveticus 766. Biopolymers 2002;63:66-76. [PMID: 11754349 DOI: 10.1002/bip.1063] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
17
Engelsen SB, Monteiro C, Hervé de Penhoat C, Pérez S. The diluted aqueous solvation of carbohydrates as inferred from molecular dynamics simulations and NMR spectroscopy. Biophys Chem 2001;93:103-27. [PMID: 11804720 DOI: 10.1016/s0301-4622(01)00215-0] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
18
Intramolecular carbohydrate-protein interaction’. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2001. [DOI: 10.1007/978-1-4615-1267-7_10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register]
19
Leeflang BR, Faber EJ, Erbel P, Vliegenthart JF. Structure elucidation of glycoprotein glycans and of polysaccharides by NMR spectroscopy. J Biotechnol 2000;77:115-22. [PMID: 10674218 DOI: 10.1016/s0168-1656(99)00212-6] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
20
Montero E, Vallmitjana M, Pérez-Pons JA, Querol E, Jiménez-Barbero J, Cañada FJ. NMR studies of the conformation of thiocellobiose bound to a beta-glucosidase from Streptomyces sp. FEBS Lett 1998;421:243-8. [PMID: 9468315 DOI: 10.1016/s0014-5793(97)01571-8] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
21
Spronk BA, Rademaker GJ, Haverkamp J, Thomas-Oates JE, Vincken JP, Voragen AG, Kamerling JP, Vliegenthart JF. Dimers of a GFG hexasaccharide occur in apple fruit xyloglucan. Carbohydr Res 1997;305:233-42. [PMID: 9581277 DOI: 10.1016/s0008-6215(97)10027-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
22
Mikhailov D, Linhardt RJ, Mayo KH. NMR solution conformation of heparin-derived hexasaccharide. Biochem J 1997;328 ( Pt 1):51-61. [PMID: 9359833 PMCID: PMC1218886 DOI: 10.1042/bj3280051] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
23
Hricovíni M, Guerrini M, Torri G, Casu B. Motional properties of E. coli polysaccharide K5 in aqueous solution analyzed by NMR relaxation measurements. Carbohydr Res 1997;300:69-76. [PMID: 9203334 DOI: 10.1016/s0008-6215(97)00036-0] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
24
Robijn GW, Imberty A, van den Berg DJ, Ledeboer AM, Kamerling JP, Vliegenthart JF, Pérez S. Predicting helical structures of the exopolysaccharide produced by Lactobacillus sake 0- 1. Carbohydr Res 1996;288:57-74. [PMID: 8765727 DOI: 10.1016/s0008-6215(96)90777-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
25
Hardy BJ, Gutierrez A, Lesiak K, Seidl E, Widmalm G. Structural Analysis of the Solution Conformation of Methyl 4-O-β-d-Glucopyranosyl-α-d-Glucopyranoside by Molecular Mechanics and ab Initio Calculation, Stochastic Dynamics Simulation, and NMR Spectroscopy. ACTA ACUST UNITED AC 1996. [DOI: 10.1021/jp953139i] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
Brant DA, Liu HS, Zhu ZS. The dependence of glucan conformational dynamics on linkage position and stereochemistry. Carbohydr Res 1995;278:11-26. [PMID: 8536263 DOI: 10.1016/0008-6215(95)00242-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
27
Asensio JL, Cañada FJ, Jimenez-Barbero J. Studies of the bound conformations of methyl alpha-lactoside and methyl beta-allolactoside to ricin B chain using transferred NOE experiments in the laboratory and rotating frames, assisted by molecular mechanics and dynamics calculations. EUROPEAN JOURNAL OF BIOCHEMISTRY 1995;233:618-30. [PMID: 7588809 DOI: 10.1111/j.1432-1033.1995.618_2.x] [Citation(s) in RCA: 47] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
28
Spronk BA, Rivera-Sagredo A, Kamerling JP, Vliegenthart JF. A reinvestigation towards the conformation of methyl alpha-D-mannopyranosyl-(1-->6)-alpha-D-mannopyranoside by a combined ROE and molecular dynamics analysis. Carbohydr Res 1995;273:11-26. [PMID: 7553667 DOI: 10.1016/0008-6215(95)00061-w] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
29
Lommerse JP, Kroon-Batenburg LM, Kroon J, Kamerling JP, Vliegenthart JF. Conformations and internal mobility of a glycopeptide derived from bromelain using molecular dynamics simulations and NOESY analysis. JOURNAL OF BIOMOLECULAR NMR 1995;6:79-94. [PMID: 7663144 DOI: 10.1007/bf00417494] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
30
Miertus S, Bertocchi C, Krempaska R, Paoletti S. Conformational analysis of segments of oxidized cellulose. Part I: Molecular modelling of glucuronic acid dimers considering the effect of counter-ions and a polar environment. Int J Biol Macromol 1995;17:183-8. [PMID: 7577816 DOI: 10.1016/0141-8130(95)92684-i] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
31
André I, Mazeau K, Taravel FR, Tvaroska I. Conformation and dynamics of a cyclic (1-->2)-beta-D-glucan. Int J Biol Macromol 1995;17:189-98. [PMID: 7577817 DOI: 10.1016/0141-8130(95)92685-j] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
32
Hricovíni M, Torri G. Dynamics in aqueous solutions of the pentasaccharide corresponding to the binding site of heparin for antithrombin III studied by NMR relaxation measurements. Carbohydr Res 1995;268:159-75. [PMID: 7736468 DOI: 10.1016/0008-6215(94)00334-c] [Citation(s) in RCA: 53] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
33
Van Halbeek H. NMR developments in structural studies of carbohydrates and their complexes. Curr Opin Struct Biol 1994. [DOI: 10.1016/s0959-440x(94)90168-6] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
34
James TL. Computational strategies pertinent to NMR solution structure determination. Curr Opin Struct Biol 1994. [DOI: 10.1016/s0959-440x(94)90320-4] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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