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Luo S, Chen X, Zeng D, Tang N, Yuan D, Zhong Q, Mao A, Xu R, Yan T. The value of single-molecule real-time technology in the diagnosis of rare thalassemia variants and analysis of phenotype-genotype correlation. J Hum Genet 2022; 67:183-195. [PMID: 34690349 PMCID: PMC8948088 DOI: 10.1038/s10038-021-00983-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2021] [Revised: 09/19/2021] [Accepted: 09/29/2021] [Indexed: 12/03/2022]
Abstract
To compare single-molecule real-time technology (SMRT) and conventional genetic diagnostic technology of rare types of thalassemia mutations, and to analyze the molecular characteristics and phenotypes of rare thalassemia gene variants, we used 434 cases with positive hematology screening as the cohort, then used SMRT technology and conventional gene diagnosis technology [(Gap-PCR, multiple ligation probe amplification technology (MLPA), PCR-reverse dot blot (RDB)] for thalassemia gene screening. Among the 434 enrolled cases, conventional technology identified 318 patients with variants (73.27%) and 116 patients without variants (26.73%), SMRT identified 361 patients with variants (83.18%), and 73 patients without variants (16.82%). The positive detection rate of SMRT was 9.91% higher than conventional technology. Combination of the two methods identified 485 positive alleles among 49 types of variant. The genotypes of 354 cases were concordant between the two methods, while 80 cases were discordant. Among the 80 cases, 76 cases had variants only identified in SMRT method, 3 cases had variants only identified in conventional method, and 1 false positive result by the traditional PCR detection technology. Except the three variants in HS40 and HBG1-HBG2 loci, which was beyond the design of SMRT method in this study, all the other discordant variants identified by SMRT were validated by further Sanger sequencing or MLPA. The hematological phenotypic parameters of 80 discordant cases were also analyzed. SMRT technology increased the positive detection rate of thalassemia genes, and detected rare thalassemia cases with variable phenotypes, which had great significance for clinical thalassemia gene screening.
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Affiliation(s)
- Shiqiang Luo
- grid.477238.dDepartment of Medical Genetics, Liuzhou Key Laboratory of Birth Defects Prevention and Control, Liuzhou Maternity and Child Healthcare Hospital, 545001 Liuzhou, Guangxi China ,Liuzhou Key Laboratory of Reproductive Medicine, 545001 Liuzhou, Guangxi China
| | - Xingyuan Chen
- grid.410652.40000 0004 6003 7358Department of Laboratory Medicine, The People’s Hospital of Guangxi Zhuang Autonomous Region, Nanning, Guangxi Zhuang Autonomous Region China ,Guangxi Academy of Medical Sciences, Nanning, Guangxi Zhuang Autonomous Region China
| | - Dingyuan Zeng
- Guangxi Health Commission Key Laboratory of Birth Cohort Study in Pregnant Women of Advanced Age, 545001 Liuzhou, Guangxi China
| | - Ning Tang
- Guangxi Health Commission Key Laboratory of Birth Cohort Study in Pregnant Women of Advanced Age, 545001 Liuzhou, Guangxi China
| | - Dejian Yuan
- grid.477238.dDepartment of Medical Genetics, Liuzhou Key Laboratory of Birth Defects Prevention and Control, Liuzhou Maternity and Child Healthcare Hospital, 545001 Liuzhou, Guangxi China ,Liuzhou Key Laboratory of Reproductive Medicine, 545001 Liuzhou, Guangxi China
| | - Qingyan Zhong
- grid.477238.dDepartment of Medical Genetics, Liuzhou Key Laboratory of Birth Defects Prevention and Control, Liuzhou Maternity and Child Healthcare Hospital, 545001 Liuzhou, Guangxi China ,Liuzhou Key Laboratory of Reproductive Medicine, 545001 Liuzhou, Guangxi China
| | - Aiping Mao
- Berry Genomics Corporation, 102200 Beijing, China
| | - Ruofan Xu
- Berry Genomics Corporation, 102200 Beijing, China
| | - Tizhen Yan
- Department of Medical Genetics, Liuzhou Key Laboratory of Birth Defects Prevention and Control, Liuzhou Maternity and Child Healthcare Hospital, 545001, Liuzhou, Guangxi, China. .,Liuzhou Key Laboratory of Reproductive Medicine, 545001, Liuzhou, Guangxi, China.
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Bissé E, Schaeffer C, Hovasse A, Preisler-Adams S, Epting T, Baumstark M, Van Dorsselaer A, Horst J, Wieland H. Haemoglobin Noah Mehmet Oeztuerk (α2 δ2143 (H21)His→Tyr: A novel δ-chain variant in the 2,3-DPG binding site. J Chromatogr B Analyt Technol Biomed Life Sci 2008; 871:55-9. [DOI: 10.1016/j.jchromb.2008.06.055] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2007] [Revised: 06/19/2008] [Accepted: 06/22/2008] [Indexed: 12/01/2022]
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Abstract
Hemoglobin Abruzzo is a stable hemoglobin variant with increased oxygen affinity, clinically causing compensatory erythrocytosis in affected patients. Heterozygosity of this variant with or without beta-thalassemia has been previously described in three Italian families, thereby suggesting a single origin of the mutation. The authors report the first case of homozygosity in a North American female infant, born to heterozygous parents as a product of consanguineous marriage.
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Affiliation(s)
- Lakshmi Venkateswaran
- Tulane University School of Medicine, Huey P. Long Medical Center, Pineville, LA 71361, and Department of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, USA.
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Mosca A, Paleari R, Rubino FM, Zecca L, De Bellis G, Debernardi S, Baudo F, Cappellini D, Fiorelli G. Hb Abruzzo [beta 143(H21)His-->Arg] identified by mass spectrometry and DNA analysis. Hemoglobin 1993; 17:261-8. [PMID: 8330980 DOI: 10.3109/03630269308998902] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- A Mosca
- Dipartimento di Scienze e Tecnologie Biomediche, Universita degli Studi, Milano, Italia
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Zhao W, Wilson JB, Webber BB, Huisman TH, Sciarratta GV, Ivaldi G, Ripamonti M. A second observation of Hb Abruzzo [alpha 2 beta 2(143)(H21)His----Arg] in an Italian family. Hemoglobin 1990; 14:463-6. [PMID: 2283302 DOI: 10.3109/03630269009032009] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- W Zhao
- Department of Cell and Molecular Biology, Medical College of Georgia, Augusta 30912-2100
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Perutz MF, Gronenborn AM, Clore GM, Shib DT, Craescu CT. Comparison of histidine proton magnetic resonances of human carbonmonoxyhaemoglobin in different buffers. J Mol Biol 1985; 186:471-3. [PMID: 3003366 DOI: 10.1016/0022-2836(85)90119-6] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
We have recorded the C-2 proton resonances of the histidines of carbonmonoxyhaemoglobin A and of four abnormal human HbCOs in different buffers and at different concentrations of haemoglobin. Resonance H assigned by Perutz et al. (1985) to His HC3(146) beta, is present at both pH 7.30 and pH 6.90, but somewhat broadened when recorded in 5 to 10% HbCO A in 0.1 M-bis-Tris. The broadening disappears on tenfold dilution of the Hb with bis-Tris and the resonance then stands out sharply. Resonance H is absent at both Hb concentrations in HbCO Cowtown (His HC3(146) beta----Leu). HbCO Fort de France (His CD3(45) alpha----Arg) in 0.1 M-bis-Tris of pH 6.90 has a spectrum similar to that of HbCO A. In the same buffer a resonance marked L by Russu et al. (1982) is absent from the spectrum of Hb Abbruzzo (His H21(143) beta----Arg), whereas resonance H is present. Hb Barcelona contains an additional histidine in position FG1(94) beta; in 0.1 M-bis-Tris buffer of pH 6.90 its resonance is not resolved and resonance H is either shifted or broadened. The resonances of both histidines are resolved in phosphate buffer. At pH 6.90, spectra in 0.1 M-bis-Tris buffer are similar to those previously recorded in 0.2 M-HEPES. Addition of 0.1 M-KCl produces marked changes. Replacement of bis-Tris by 0.2 M-KCl + 0.2 M-phosphate gives rise to a different and much better resolved spectrum.
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Alberti R, Tentori L, Martinucci M, Borghesi V. Hb A2-Adria (delta 51 Pro yield Arg (D2)): a new delta-chain variant found in association with beta-thalassemia. Hemoglobin 1978; 2:171-4. [PMID: 640854 DOI: 10.3109/03630267809074783] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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Mavilio F, Marinucci M, Tentori L, Fontanarosa PP, Rossi U, Biagiotti S. Hemoglobin Legnano (alpha2 141 (HC3) Arg replaced by Leu beta2): a new abnormal human hemoglobin with high oxygen affinity. Hemoglobin 1978; 2:249-59. [PMID: 701083 DOI: 10.3109/03630267809007070] [Citation(s) in RCA: 36] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
An abnormal, fast moving hemoglobin was noted in a 34-yr-old male patient living in Legnano (northern Italy) affected with renal failure and iron deficiency anemia, not related to the presence of the Hb variant. Structural studies have demonstrated a previously undescribed amino acid substitution, alpha 141 Arg replaced by Leu. This new variant has been named Hb Legnano, and is characterized by an increased oxygen affinity and a low cooperativity, at least as far as preliminary functional studies carried out on whole blood have indicated. Family studies are reported: three other heterozygous carriers were observed among the relatives of the propositus, all showing a mild polycythemia which, however, does not seem to produce appreciable clinical consequences.
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Kleckner HB, Wilson JB, Lindeman JG, Stevens PD, Niazi G, Hunter E, Chen CJ, Huisman TH. Hemoglobin Fort Gordon or alpha2beta2145 Tyr replaced by Asp, a new high-oxygen-affinity hemoglobin variant. BIOCHIMICA ET BIOPHYSICA ACTA 1975; 400:343-7. [PMID: 1164510 DOI: 10.1016/0005-2795(75)90189-0] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Hemoglobin Fort Gordon, alpha2beta2145 Tyr replaced by Asp (HC2), has been observed in a 20-year-old black male with compensatory erythrocytosis. The variant was readily identified by electrophoresis and chromatography, and comprised about 30% of the red cell hemoglobin. The substitution was identified through analyses of tryptic peptides of various digests of the isolated beta chain. The oxygen affinity of whole blood was increased; two components were observed one of which had a greatly increased affinity for oxygen and a markedly reduced subunit cooperativity. It appears that the Tyr replaced by Asp substitution resembles the Tyr replaced by His substitution in hemoglobin Bethesda (Bunn, H. F. et al. (1972) J. Clin. Invest. 51, 2299-2309; Olson, J. S. and Gibson, G. H. (1972) J Biol. Chem. 247, 3662-3670; Adamson et al. (1972) J. Clin. Invest. 51, 2883-2888) in that both inhibit the quarternary change of the oxy to the deoxy conformation, resulting in greatly altered functional properties. Studies of a few members of the family were negative.
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Bonaventura J, Bonaventura C, Amiconi G, Tentori L, Brunori M, Antonini E. Allosteric interactions in non-alpha chains isolated from normal human hemoglobin, fetal hemoglobin, and hemoglobin Abruzzo (beta143 (H21) His replaced by Arg). J Biol Chem 1975. [DOI: 10.1016/s0021-9258(19)41062-4] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022] Open
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Hemoglobin Abruzzo (beta143 (H21) His replaced by Arg). Consequences of altering the 2,3-diphosphoglycerate binding site. J Biol Chem 1975. [DOI: 10.1016/s0021-9258(19)41061-2] [Citation(s) in RCA: 27] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
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Kirschenbaum DM. A compilation of amino acid analyses of proteins. IX. Residues per mole of protein--7. Hemoglobin, part A--human. Anal Biochem 1975; 65:466-99. [PMID: 1093450 DOI: 10.1016/0003-2697(75)90534-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Bromberg PA, Alben JO, Bare GH, Balcerzak SP, Jones RT, Brimhall B, Padilla F. High oxygen affinity variant of haemoglobin Little Rock with unique properties. NATURE: NEW BIOLOGY 1973; 243:177-9. [PMID: 4514629 DOI: 10.1038/newbio243177a0] [Citation(s) in RCA: 33] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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