Self-assembled monolayers of dithiols, diisocyanides, and isocyanothiols on gold: ‘chemically sticky’ surfaces for covalent attachment of metal clusters and studies of interfacial electron transfer

Surface immobilization strategies for the development of electrochemical nucleic acid sensors

Following the recent pandemic and with the emergence of cell-free nucleic acids in liquid biopsies as promising biomarkers for a broad range of pathologies, there is an increasing demand for a new generation of nucleic acid tests, with a particular focus on cost-effective, highly sensitive and specific biosensors. Easily miniaturized electrochemical sensors show the greatest promise and most typically rely on the chemical functionalization of conductive materials or electrodes with sequence-specific hybridization probes made of standard oligonucleotides (DNA or RNA) or synthetic analogues (e.g. Peptide Nucleic Acids or PNAs). The robustness of such sensors is mostly influenced by the ability to control the density and orientation of the probe at the surface of the electrode, making the chemistry used for this immobilization a key parameter. This exhaustive review will cover the various strategies to immobilize nucleic acid probes onto different solid electrode materials. Both physical and chemical immobilization techniques will be presented. Their applicability to specific electrode materials and surfaces will also be discussed as well as strategies for passivation of the electrode surface as a way of preventing electrode fouling and reducing nonspecific binding.

Homoleptic complexes of isocyano- and diisocyanobiazulenes with a 12-electron, ligand-based redox capacity

Oligo- and polyazulenes are attractive π-conjugated building blocks in designing advanced functional materials. Herein, we demonstrate that anchoring one or both isocyanide termini of the redox non-innocent 2,2'-diisocyano-6,6'-biazulenic π-linker (1) to the redox-active [Cr(CO)5] moiety provided a convenient intramolecular redox reference for unambiguously establishing that the 6,6'-biazulenic scaffold undergoes a reversible one-step 2e- reduction governed by reduction potential compression/inversion. Treatment of bis(η6-naphthalene)chromium(0) with six equiv. of 2-isocyano-1,1',3,3'-tetraethoxycarbonyl-6,6'-biazulene (6) or [(OC)5Cr(η1-2,2'-diisocyano-1,1',3,3'-tetraethoxycarbonyl-6,6'-biazulene)] (11) afforded homoleptic Cr(0) complexes 13 and 14 with a 12e- (per molecule) ligand-based reduction capacity at mild E1/2 of -1.29 V and -1.15 V vs. Cp2Fe0/+, respectively. The overall reversible redox capacity varies from 15e- for the mononuclear complex 13 to 21e- for the heptanuclear complex 14. The latter "nanocomplex" has a diameter of ca. 5 nm and features seven Cr(0) centers interlinked with six 2,2'-diisocyano-6,6'-biazulenic bridges. The X-ray structure of [(OC)5Cr(2-isocyano-1,1',3,3'-tetraethoxycarbonyl-6,6'-biazulene)] (7) indicated a 43.5° interplanar angle between the two azulenic moieties. Self-assembly of 11 on a Au(111) substrate afforded an organometallic monolayer film of 11 featuring approximately upright orientation of the 2,2'-diisocyano-6,6'-biazulenic linkers, as evidenced by ellipsometric measurements and the RAIR signature of the C4v-symmetric [(-NC)Cr(CO)5] infrared reporter within 11. Remarkably, comparing the FTIR spectrum of 11 in solution with the RAIR spectrum of 11 adsorbed on Au(111) suggested electronic coupling at a ca. 2 nm distance between the Cr(0) and Au atoms linked by the 2,2'-diisocyano-6,6'-biazulene bridge.

Plasmon-Driven Oxidative Coupling of Aniline-Derivative Adsorbates: A Comparative Study of para-Ethynylaniline and para-Mercaptoaniline

Plasmon-driven photocatalysis has emerged as a paradigm-shifting approach, based upon which the energy of photons can be judiciously harnessed to trigger interfacial molecular transformations on metallic nanostructure surfaces in a regioselective manner with nanoscale precision. Over the past decade, the formation of aromatic azo compounds through plasmon-driven oxidative coupling of thiolated aniline-derivative adsorbates has become a testbed for developing detailed mechanistic understanding of plasmon-mediated photochemistry. Such photocatalytic bimolecular coupling reactions may occur not only between thiolated aniline-derivative adsorbates but between their nonthiolated analogues as well. How the nonthiolated adsorbates behave differently from their thiolated counterparts during the plasmon-driven coupling reactions, however, remains largely unexplored. Here, we systematically compare an alkynylated aniline-derivative, para-ethynylaniline, to its thiolated counterpart, para-mercaptoaniline, in terms of their adsorption conformations, structural flexibility, photochemical reactivity, and transforming kinetics on Ag nanophotocatalyst surfaces. We employ surface-enhanced Raman scattering as an in situ spectroscopic tool to track the detailed structural evolution of the transforming molecular adsorbates in real time during the plasmon-driven coupling reactions. Rigorous analysis of the spectroscopic results, further aided by density functional theory calculations, lays an insightful knowledge foundation that enables us to elucidate how the alteration of the chemical nature of metal-adsorbate interactions profoundly influences the transforming behaviors of the molecular adsorbates during plasmon-driven photocatalytic reactions.

Influence of the terminal group on the thermal decomposition reactions of carboxylic acids on copper: nature of the carbonaceous film

The effect of the terminal groups on the nature of the films formed by the thermal decomposition of carboxylic acids on copper is studied in ultrahigh vacuum using temperature-programmed desorption (TPD), scanning tunneling microscopy (STM) and Auger electron spectroscopy (AES). The influence of the presence of vinyl or alkynyl terminal groups and chain length is studied using heptanoic, octanoic, 6-heptenoic, 7-octenoic, 6-heptynoic and 7-octynoic acids. The carboxylic acids form strongly bound carboxylates following adsorption on copper at room temperature, and thermally decompose between ∼500 and 650 K. Previous work has shown that this occurs by the carboxylate plane tilting towards the surface to eliminate carbon dioxide and deposit a hydrocarbon fragment. The fragment can react to evolve hydrogen or form oligomeric species on the surface, where the amount of carbon increases for carboxylic acids that contain terminal functional groups that can anchor to the surface. These results will be used to compare with the carbonaceous films formed by the mechanochemical decomposition of carboxylic acids on copper, which occurs at room temperature. This is expected to lead to less carbon being deposited on the surface than during thermal decomposition.

Adsorption and reaction pathways of 7-octenoic acid on copper

The surface structure and reaction pathways of 7-octenoic acid are studied on a clean copper substrate in ultrahigh vacuum using a combination of reflection-absorption infrared spectroscopy, X-ray photoelectron spectroscopy, temperature-programmed desorption and scanning-tunneling microscopy, supplemented by first-principles density functional theory calculations. 7-Octenoic acid adsorbs molecularly on copper below ∼260 K in a flat-lying configuration at low coverages, becoming more upright as the coverage increases. It deprotonates following adsorption at ∼300 K to form an η2-7-octenoate species. This also lies flat at low coverages, but forms a more vertical self-assembled monolayer as the coverage increases. Heating causes the 7-octenoate species to start to tilt, which produces a small amount of carbon dioxide at ∼550 K and some hydrogen in a peak at ∼615 K ascribed to the reaction of these tilted species. The majority of the decarbonylation occurs at ∼650 K when CO2 and hydrogen evolve simultaneously. Approximately half of the carbon is deposited on the surface as oligomeric species that undergo further dehydrogenation to evolve more hydrogen at ∼740 K. This leaves a carbonaceous layer on the surface, which contains hexagonal motifs connoting the onset of graphitization of the surface.

Chemical self-assembly strategies for designing molecular electronic circuits

Design principles are demonstrated for fabricating molecular electronic circuits using the inherently self-limiting growth of molecular wires between gold nanoparticles from the oligomerization of 1,4-phenylene diisocyanide.

First π-linker featuring mercapto and isocyano anchoring groups within the same molecule: Synthesis, heterobimetallic complexation and self-assembly on Au(111)

Mercapto (-SH) and isocyano (-N≡C) terminated conducting π-linkers are often employed in the ever-growing quest for organoelectronic materials. While such systems typically involve symmetric dimercapto or diisocyano anchoring of the organic bridge, this article introduces the chemistry of a linear azulenic π-linker equipped with one mercapto and one isocyano terminus. The 2-isocyano-6-mercaptoazulene platform was efficiently accessed from 2-amino-6-bromo-1,3-diethoxycarbonylazulene in four steps. The 2-N≡C end of this 2,6-azulenic motif was anchrored to the [Cr(CO)₅] fragment prior to formation of its 6-SH terminus. Metalation of the 6-SH end of [(OC)₅Cr(η¹-2-isocyano-1,3-diethoxycarbonyl-6-mercaptoazulene)] (7) with Ph₃PAuCl, under basic conditions, afforded X-ray structurally characterized heterobimetallic Cr⁰/Au^I ensemble [(OC)₅Cr(μ-η¹:η¹-2-isocyano-1,3-diethoxycarbonyl-6-azulenylthiolate)AuPPh₃] (8). Analysis of the ¹³C NMR chemical shifts for the [(NC)Cr(CO)₅] core in a series of the related complexes [(OC)₅Cr(2-isocyano-6-X-1,3-diethoxy-carbonylazulene)] (X = -N≡C, Br,H, SH, SCH₂CH₂CO₂CH₂CH₃, SAuPPh₃) unveiled remarkably consistent inverse-linear correlations δ( ¹³CO_trans) vs. δ( ¹³CN) and δ( ¹³CO_cis) vs. δ( ¹³CN) that appear to hold well beyond the above 2-isocyanoazulenic series to include complexes [(OC)₅Cr(CNR)] containing strongly electron-withdrawing substituents R, such as CF₃, CFClCF₂Cl, C₂F₃, and C₆F₅. In addition to functioning as asensitive ¹³C NMR handle, the essentially C_4v-symmetric [(-NC)Cr(CO)₅] moiety proved to be an informative, remote, ν_N≡C/ν_C≡O infrared reporter in probing chemisorption of 7 on the Au(111) surface.

CHEMICALLY SELF-ASSEMBLED NANOELECTRONIC COMPUTING NETWORKS

Recent advances in chemical self-assembly will soon make it possible to synthesize extremely powerful computing machinery from metallic clusters and organic molecules. These self-organized networks can function as Boolean logic circuits, associative memory, image processors, and combinatorial optimizers. Computational or signal processing activity is elicited from simple charge interactions between clusters which are resistively/capacitively linked by conjugated molecular wires or ribbons. The resulting circuits are massively parallel, fault-tolerant, ultrafast, ultradense and dissipate very little power.

Raman and DFT study of polar nu(CN) and non-polar nu(C-H) modes of acetonitrile in aqueous Ag nano-colloids

Raman spectra of acetonitrile (Acn) in different millimolar (mM) concentrations adsorbed on Ag nano-colloids were recorded in the region 2100-3300cm(-1). The nu(CN) and nu(C-H) modes show blue shifts of approximately 3 and approximately 1cm(-1), respectively, when the concentration of Acn in the mixture is increased from 2 to 8mM. The blue shift of nu(CN) and nu(C-H) modes is predominantly because of adsorption of Acn molecules on Ag nano-colloids. The wave number shift and variation of intensity of the nu(CN) and nu(C-H) bands have been discussed in terms of the adsorption geometry, which probably changes from flat-on configuration at lower concentration of Acn to an end-on configuration at higher concentration of Acn. The dephasing of nu(CN) oscillator becomes considerably slower at higher concentration of Acn. The adsorption of Acn molecules on the nano-colloids was simulated using the (B3LYP) method and the basis sets used for Acn molecules and Ag atoms were 6-311++G(d,p) and Lanl2dz, respectively.

Electrochemistry of redox-active self-assembled monolayers

Redox-active self-assembled monolayers (SAMs) provide an excellent platform for investigating electron transfer kinetics. Using a well-defined bridge, a redox center can be positioned at a fixed distance from the electrode and electron transfer kinetics probed using a variety of electrochemical techniques. Cyclic voltammetry, AC voltammetry, electrochemical impedance spectroscopy, and chronoamperometry are most commonly used to determine the rate of electron transfer of redox-activated SAMs. A variety of redox species have been attached to SAMs, and include transition metal complexes (e.g., ferrocene, ruthenium pentaammine, osmium bisbipyridine, metal clusters) and organic molecules (e.g., galvinol, C(60)). SAMs offer an ideal environment to study the outer-sphere interactions of redox species. The composition and integrity of the monolayer and the electrode material influence the electron transfer kinetics and can be investigated using electrochemical methods. Theoretical models have been developed for investigating SAM structure. This review discusses methods and monolayer compositions for electrochemical measurements of redox-active SAMs.

On the thermodynamic stability of alpha,omega-alkanedithiols self-assembled monolayers on unreconstructed and reconstructed Au(111)

A comparative study on the thermodynamic stability of the lying down (LD) and standing up (SU) phases of alpha,omega-butanedithiol (BDT) on unreconstructed (U) and on reconstructed (R) Au(111) surfaces is presented. The R surface is made of dithiol-Au adatom units. Density functional calculations (DFT) allow the estimation of the adsorption energy of the LD and SU BDT phases on both substrates. Surface free energies based on the DFT calculations show the coverage of the clean Au(111) surface by the LD phase, and the LD to SU phase transition as the chemical potential of the BDT molecule is increased. The LD and SU phases are more stable on R than on U substrates, suggesting that the Au(111) surface should reconstruct upon BDT adsorption. The stability analysis is extended to longer alpha,omega-dithiols. Results reveal that the LD to SU phase transition is favored as the hydrocarbon chain length of the dithiol molecule is increased. Changes in the hydrogen pressure affect the formation of the LD phase, while they have only minor effects on the LD to SU phase transitions. Our calculations explain the influence of the number of carbon atoms in the hydrocarbon chains, hydrogen pressure and dithiol pressure (or concentration) on dithiol adsorption, and phase transitions. This information is relevant to control the coverage, reactivity, and surface chemistry of the alpha,omega-dithiol self-assembled monolayers on Au surfaces.

Filled nanoporous surfaces: controlled formation and wettability

The controlled filling of hydrophobic nanoporous surfaces with hydrophilic molecules and their wetting properties are described and demonstrated by using thiocholesterol (TC) self-assembled monolayers (SAMs) on gold and mercaptoundecanoic acid (MUA) as the filling agent. A novel procedure was developed for filling the nanopores in the TC SAMs by immersing them into a "cocktail" solution of TC and MUA, with TC in huge excess. This procedure results in an increasing coverage of MUA with increasing immersion time up to an area fraction of approximately 23%, while the amount of TC remains almost constant. Our findings strongly support earlier observations where linear omega-substituted alkanethiols selectively fill defects (nanopores) in the TC SAM (Yang et al. Langmuir 1997, 12, 1704-1707). They also support the formation of a homogeneously mixed SAM, given by the distribution of TC on the gold surface, rather than of a phase-segregated overlayer structure with domains of varying size, shape, and composition. The wetting properties of the filled SAMs were investigated by measuring the most stable contact angle as well as contact angle hysteresis. It is shown that the most stable contact angle is very well described by the Cassie equation, since the drops are much larger than the scale of chemical heterogeneity of the SAM surfaces. In addition, it is demonstrated that contact angle hysteresis is sensitive to the chemical heterogeneity of the surface, even at the nanometric scale.

Selective electroless copper deposition on self-assembled dithiol monolayers

The paper reports the use of self-assembled monolayers (SAMs) of dithiols to induce electroless copper deposition on a gold substrate. The metallization catalyst, palladium nanoparticles, is bound on the dithiol SAM. The assembly process is followed by IR and X-ray photoelectron spectroscopies to confirm the formation of a monolayer with bound catalyst. Electroless metallization is then carried out with a steady deposition rate of 130 nm/min. Additionally, microcontact printing of the catalyst on the SAM by poly(dimethylsiloxane) stamps is used to localize copper deposits. Resulting metallization is selective and allows for a high resolution.

Enzymatic proteolysis of a surface-bound alpha-helical polypeptide

In this work, we studied the interactions of enzymes with model substrate surfaces using label-free techniques. Our model system was based on serine proteases (a class of enzymes that digests proteins) and surface-bound polypeptide substrates. While previous studies have focused on bulk media factors such as pH, ionic strength, and surfactants, this study focuses on the role of the surface-bound substrate itself. In particular, we assess how the substrate density of a polypeptide with an alpha-helical secondary structure influences surface reactivity. An alpha-helical secondary structure was chosen based on literature indicating that stable alpha-helices can resist enzymatic digestion. To investigate the protease resistance of a surface-bound a-helix, we designed an a-helical polypeptide (SS-polypeptide, where SS = disulfide), used it to form films of varying surface coverage and then measured responses of the films to enzymatic exposure. Using quartz-crystal microbalance with dissipation (QCM-D), angle-resolved X-ray photoelectron spectroscopy (AR-XPS), grazing-angle infrared spectroscopy (GAIRS), and other techniques, we characterized the degradation of films to determine how the lateral packing density of the surface-bound SS-polypeptide substrate affected surface proteolysis. Characterization of pure SS-polypeptide films indicated dense packing of helices that maintained their helical structure and were generally oriented normal to the surface. We found that films of pure SS-polypeptide significantly resisted enzymatic digestion, while incorporation of very minor amounts of a diluent in such films resulted in rapid digestion. In part, this may be due to the need for the enzyme to bind several peptides along the peptide substrate within the cleft for digestion to occur. Only SS-polypeptide films that were densely packed and did not permit catalytic access to multiple peptides (e.g., terminal peptides only) were resistant to enzymatic proteolysis.

Nanografting versus solution self-assembly of alpha,omega-alkanedithiols on Au(111) investigated by AFM

The solution self-assembly of alpha,omega-alkanedithiols onto Au(111) was investigated using atomic force microscopy (AFM). A heterogeneous surface morphology is apparent for 1,8-octanedithiol and for 1,9-nonanedithiol self-assembled monolayers (SAMs) prepared by solution immersion as compared to methyl-terminated n-alkanethiols. Local views from AFM images reveal a layer of mixed molecular orientations for alpha,omega-alkanedithiols, which evidence surface structures with heights corresponding to both lying-down and standing-up orientations. For dithiol SAMs prepared by solution self-assembly, the majority of alpha,omega-alkanedithiol molecules chemisorb with both thiol end groups bound to the Au(111) surface with the backbone of the alkane chain aligned parallel to the surface. However, AFM images disclose that there are also islands of standing molecules scattered throughout the surface. To measure the thickness of alpha,omega-alkanedithiol SAMs with angstrom sensitivity, methyl-terminated n-alkanethiols with known dimensions were used as molecular rulers. Under conditions of spatially constrained self-assembly, nanopatterns of alpha,omega-alkanedithiols written by nanografting formed monolayers with heights corresponding to an upright configuration.

Metallization of a thiol-terminated organic surface using chemical vapor deposition

The deposition and the subsequent decomposition of an organometallic precursor, (eta (3)-allyl)(eta (5)-cyclopentadienyl)palladium [Cp(allyl)Pd], on an organic surface exposed by self-assembled monolayers (SAM) was studied using X-ray photoelectron spectroscopy (XPS) and infrared reflection absorption spectroscopy (IRRAS). The interfacial chemical reactions of the vapor-deposited metal precursor with the pendant thiol group of the SAMs made from oligophenyldithiols, which are either prepared directly (terphenyldimethyldithiol, TPDMT) or by a deprotection route from SAMs formed by a monoacylated derivative of biphenyldimethyldithiol (dep. BPDMAc-1) have been studied in detail. When the TPDMT-SAMs were exposed to Cp(allyl)Pd vapor, a Pd (2+)/allyl-terminated SAM surface was obtained (to a lower extent this was also the case for dep. BPDMAc-1 SAMs), which was stable against exposure to H 2 gas. Reduction to Pd (0) by H 2 was only observed when small amounts of Pd (0) were already present, for example, after prolonged exposure to the precursor. The catalytic activity of the small Pd (0) particles also caused a decomposition of the SAMs upon exposure to air.

Grafting and thermal stripping of organo-bimetallic clusters on AU surfaces: toward controlled CO/RU aggregates

The controlled stoichiometry of heterometallic carbonyl clusters make them attractive precursors for the stabilization of bare metal alloy clusters for magnetic applications. The mixed-metal molecular cluster [RuCo3(H)(CO)12] has been functionalized with the phosphane-thiol ligand Ph2PCH2CH2SH to allow subsequent anchoring on a gold surface. The resulting tetrahedral cluster [RuCo3(H)(CO)11(Ph2PCH2CH2SH)] (1) has been characterized by X-ray diffraction and the P-monodentate ligand is axially bound to a cobalt center and trans to the ruthenium cap. This synthesis also yielded the product of oxidative coupling, in which two SH groups were coupled intermolecularly to give a disulfide ligand that links two tetrahedral cluster units in [{RuCo3(H)(CO)11(Ph2PCH2CH2S)}2] (2). This cluster has also been characterized by X-ray diffractions studies. After deposition of 1 on a Au(111) surface by self-assembly, the carbonyl ligands were stripped off by thermal annealing in ultra-high vacuum (UHV) to form a metallic species. X-ray photoelectron spectroscopic measurements performed as a function of the annealing temperature show that the cobalt and ruthenium centers converge towards metallic character and that the stoichiometry of the alloy is retained during the annealing process. Preliminary X-ray absorption spectroscopy (XAS) synchrotron experiments indicate that clusters 1 and 2 behave similarly, which is consistent with the retention of their tetrahedral units on the gold surface after transformation of the thiol function or breaking of the disulfide bond to form Au--S bonds, respectively, has occurred.

Electrochemically deposited palladium as a substrate for self-assembled monolayers

The vast majority of reports of self-assembled monolayers (SAMs) on metals focus on the use of gold. However, other metals, such as palladium, platinum, and silver offer advantages over gold as a substrate. In this work, palladium is electrochemically deposited from PdCl2 solutions on glassy carbon electrodes to form a substrate for alkanethiol SAMs. The conditions for deposition are optimized with respect to the electrolyte, pH, and electrochemical parameters. The palladium surfaces have been characterized by scanning electron microscopy (SEM) and the surface roughness has been estimated by chronocoulometry. SAMs of alkane thiols have been formed on the palladium surfaces, and their ability to suppress a Faradaic process is used as an indication for palladium coverage on the glassy carbon. The morphology of the Pd deposit as characterized by SEM and the blocking behavior of the SAM formed on deposited Pd delivers a consistent picture of the Pd surface. It has been clearly demonstrated that, via selection of experimental conditions for the electrochemical deposition, the morphology of the palladium surface and its ability to support SAMs can be controlled. The work will be applied to create a mixed monolayer of metals, which can subsequently be used to create a mixed SAM of a biocomponent and an alkanethiol for biosensing applications.

Gold Metal-Catalyzed Reactions of Isocyanides with Primary Amines and Oxygen: Analogies with Reactions of Isocyanides in Transition Metal Complexes

Despite its generally poor catalytic properties, bulk gold metal is observed to catalyze reactions of isocyanides (CN-R) with primary amines (H2N-R') and O2 to give carbodiimides (R-N=C=N-R') at room temperature and above. Detailed infrared reflection absorption spectroscopic (IRRAS) and kinetic studies show that the reaction occurs by initial eta1-adsorption of the isocyanide on the Au surface, which activates the isocyanide to attack by the amine. This attack is the rate-determining step in the catalytic cycle and has characteristics very similar to those of amine reactions with coordinated isocyanides in transition metal complexes. However, the metallic Au surface provides a pathway involving O2 to give the carbodiimide product whereas homogeneous metal ion catalysts give formamidines [HC(=NR)(NHR')].

Surface-Enhanced Raman Spectroscopic Study of 1,4-Phenylene Diisocyanide Adsorbed on Gold and Platinum-Group Transition Metal Electrodes

Self-assembled monolayers of 1, 4-phenylene diisocyanide (PDI) were formed on Au and Pt-group transition metals and examined by surface-enhanced Raman spectroscopy under controlled applied potential. On all of the metals examined, PDI adsorbs in an edge-on manner, with one NC group bound to the surface and the other pointing away from the surface. The N-C stretching frequency (nu(NC)) suggests that depending on the metal, PDI adsorbs on different binding sites: terminal sites on Au, both terminal and bridging on Rh and Pt, and predominantly 3-fold hollow sites for Pd. This binding site preference can be understood in terms of the difference in d-band center energy and d-orbital filling among the metals. The applied potential affects the N-C bonding differently as inferred from the potential dependence of nu(NC). On Au, Rh, and Pd, the nu(NC) increases linearly with the applied potential, yielding a Stark tuning slope, dnu(NC)/dE, of 25, 12, and 10 cm(-1)/V, respectively. On Pt, the nu(NC) is nearly independent of the applied potential. On all of the metals studied, the frequencies of benzene ring vibration modes are not dependent on the applied potential, consistent with the edge-on orientation in which the ring does not directly interact with the surface. Several ring vibrations are, however, sensitive to the nature of metal substrate due to different binding sites involved. The ability of the free NC group to function as an anchoring point is demonstrated by the attachment of gold nanoparticles on PDI-covered Au and Pd. The study provides useful NC-metal bonding information for isocyanide-based molecular electronic developments.

Adsorption Characteristics of Arylisocyanide on Au and Pt Electrode Surfaces: Surface-Enhanced Raman Scattering Study

It is very important to understand metal-molecule interface characteristics for the development of efficient molecular wires in molecular electronics. Because isocyanide is potentially a good alligator clip, we have investigated in this work the adsorption characteristics of 2,6-dimethylphenylisocyanide (DMPI) on Au and Pt electrodes by recording the potential-dependent surface-enhanced Raman scattering (SERS) spectra. First of all, we confirmed that Pt nanoaggregate films were efficient SERS-active substrates, not only in ambient conditions, but also in electrochemical environments. Second, we confirmed that aryl isocyanide should adsorb on Au and Pt by forming exclusively metal-CN bonds, via a pure sigma type interaction in the case of gold compared with a sigma/pi synergistic interaction on Pt. This implies that DMPI should adsorb on Au only via the on-top site, whereas not only the on-top site, but also the 2-fold bridge and 3-fold hollow sites, could be used in the surface adsorption of DMPI on Pt. Despite these differences, DMPI was assumed to possess a vertical orientation with respect to the Au and Pt substrates, irrespective of the potential variation between +0.2 and -0.6 V relative to the Ag/AgCl reference electrode. The latter characteristics of the Au-CN and Pt-CN combinations are presumed to be useful in designing molecular-scale wires.

Self-assembly of 1,4-phenylene diisocyanide and terephthalic acid on Ni, Cu and Pt

This paper compares the adsorption behavior of 1,4-phenylene diisocyanide (PDI) and terephthalic acid (TA) on Ni, Cu and Pt surfaces. Following competitive adsorption from two-component equimolar solutions of PDI and TA, chemical analysis by XPS confirmed the preferential adsorption of PDI over TA on Ni and Cu. The ability to form "chemically sticky" surfaces on Ni, Cu and Pt surfaces by self-assembly into organized organic thin films (OOTFs) was also investigated. PM-IRRAS analysis revealed a tendency for PDI to bond in a terminal fashion through one isocyanide group, on both Ni and Cu. In contrast, PDI adsorbed in a flat configuration on Pt. Chemically sticky OOTFs have potential for utilization as coupling agents to achieve a high cross-link density and enhance stress transfer between the nanoclusters and the organic matrix molecules in metal-nanocluster-filled polymer matrix nanocomposites. The results of this work indicate that 1,4-phenylene diisocyanide is a suitable choice as a coupling agent for metal nanoclusters of Ni and Cu.

Self-assembly, characterization, and chemical stability of isocyanide-bound molecular wire monolayers on gold and palladium surfaces

Self-assembled monolayers (SAMs) of the isocyano derivative of 4,4'-di(phenylene-ethynylene)benzene (1), a member of the "OPE" family of "molecular wires" of current interest in molecular electronics, have been prepared on smooth, {111} textured films of Au and Pd. For assembly in oxygen-free environments with freshly deposited metal surfaces, infrared reflection spectroscopy (IRS) indicates the molecules assume a tilted structure with average tilt angles of 18-24 degrees from the surface normal. The combination of IRS, X-ray photoelectron spectroscopy, and density functional theory calculations all support a single sigma-type bond of the -NC group to the Au surface and a sigma/pi-type of bond to the Pd surface. Both SAMs show significant chemical instability when exposed to typical ambient conditions. In the case of the Au SAM, even a few hours storage in air results in significant oxidation of the -NC moieties to -NCO (isocyanate) with an accompanying decrease in surface chemical bonding, as evidenced by a significant increase in instability toward dissolution in solvent. In the case of the Pd SAM, similar air exposure does not result in incorporation of oxygen or loss of solvent resistance but rather results in a chemically altered interface which is attributed to polymerization of the -NC moieties to quasi-2D poly(imine) structures. Conductance probe atomic force microscope measurements show the conductance of the degraded Pd SAMs can diminish by approximately 2 orders of magnitude, an indication that the SAM-Pd electrical contact has severely degraded. These results underscore the importance of careful control of the assembly procedures for aromatic isocyanide SAMs, particularly for applications in molecular electronics where the molecule-electrode junction is critical to the operational characteristics of the device.

Relative Conductances of Alkaneselenolate and Alkanethiolate Monolayers on Au{111}

The electronic properties of alkanethiolate [CH3(CH2)nS-, n = 9 and 11] and alkaneselenolate [CH3(CH2)nSe-, n = 9 and 11] self-assembled monolayers on Au{111} have been quantitatively compared. Simultaneously acquired apparent tunneling barrier height (ATBH) and scanning tunneling microscopy (STM) images reveal that alkanethiolate molecules have a lower barrier to tunneling, and therefore a higher conductance than alkaneselenolates of the same alkyl chain length. Molecular and contact conductance differences were elucidated by using observed STM topographic tunneling height differences between the analogous species. This apparent topographic difference combined with comparative ATBH data indicate that the observed decrease in conductance for alkaneselenolates compared to alkanethiolates originates exclusively from the Au-chalcogenide physical, chemical, and electronic contact.

Competitive self-assembly of symmetrical, difunctional molecules on ambient copper surfaces

This paper describes competitive self-assembly from solutions of symmetric alpha,omega-difunctional molecules on Cu substrates briefly exposed (less than 5 min) to ambient conditions. XPS and PM-IRRAS were utilized as complimentary surface analytical techniques to characterize the resulting organized organic thin films (OOTFs) on these "ambient" Cu surfaces. The order of preferential adsorption was observed to be diisocyanide approximately = dithiol > dicarboxylic acid > dinitrile > diisothiocyanate, indicating that the isocyanide (-NC), and thiol (-SH) functions provide the strongest adhesion to ambient Cu. 1,4-Phenylene diisocyanide and 1,4-terephthalic acid were both observed to adopt a standing-up phase configuration, in which the difunctional molecules bond to the base substrate through only one terminal functional group, with the other terminal group disposed away from the substrate. This indicates the ability to utilize OOTFs to produce "sticky surfaces" on ambient Cu. All other molecules bonded to the substrate through both terminal groups, in either surface-parallel or arched "hairpin" configurations. On the basis of these findings, aromatic diisocyanides and diacids are the most suitable molecules for creating OOTFs with high packing density. Such films can be utilized as protective coatings in the assembly of printed circuit boards, where Cu is becoming an increasingly important substrate for interconnects. Moreover, the ability to create chemically sticky surfaces on ambient Cu substrates indicates exciting potential for the development of a new surface-mount technology operative at the nanometer scale.

Self-assembled diisocyanide monolayer films on gold and palladium

Self-assembled monolayers (SAMs) of the aromatic diisocyanides, 1,4-phenylenediisocyanide, 2,3,5,6-tetramethyl-1,4-phenylenediisocyanide, 4,4'-biphenyldiisocyanide, 3,3',5,5'-tetramethyl-4,4'-biphenyldiisocyanide, and 4,4' '-p-terphenyldiisocyanide, were prepared on gold and palladium surfaces. The SAMs were characterized by ellipsometry, polarization-modulated infrared reflection-absorption spectroscopy (PM-IRRAS), and grazing-angle attenuated total reflectance infrared spectroscopy (GATR). Based on the position of the metal-coordinated isocyanide stretching band, the SAMs on gold were found to bind in the terminal (eta(1)) geometry, while the SAMs on palladium prefer a different geometry which is possibly a triply bridging (mu(3)-eta(1)) geometry. A side-reaction of the unbound isocyanide in the SAM was identified as oxidation to an isocyanate group.

DNA-functionalized MFe2O4 (M = Fe, Co, or Mn) nanoparticles and their hybridization to DNA-functionalized surfaces

Magnetic MFe2O4 (M = Fe, Co, or Mn) nanoparticles with uniform diameters in the 4-20 nm range and with excellent material properties, reported previously, can be rendered soluble in water or aqueous buffers using a combination of alkylphosphonate surfactants and other surfactants such as ethoxylated fatty alcohols or phospholipids. Surfactant-modified oligonucleotides can be incorporated into the particles' organic shell. The particles can withstand salt concentrations up to 0.3 M, temperatures up to 90 degrees C, and various operations such as concentration to dryness, column or membrane separations, and electrophoresis. The particles can be selectively hybridized to DNA-functionalized gold surfaces with high coverages using a two-story monolayer structure. These particles may find valuable applications involving the magnetic detection of small numbers of biomolecules using spin valves, magnetic tunnel junctions, or other sensors.

Size-dependent adsorption of 1,4-phenylenediisocyanide onto gold nanoparticle surfaces

Adsorption of 1,4-phenylenediisocyanide (PDI) has been studied for different-sized gold nanoparticles with mean diameters of 6, 14, 23, 40, 57, and 97 nm using UV-vis absorption spectroscopy and surface-enhanced Raman scattering (SERS). The SERS enhancement was found to be relatively weak for 6-nm particles due to less aggregation between PDI and gold particles. Concentration-dependent SERS spectra show that PDI was assumed to bridge two different gold particles at low concentrations of PDI, but as the concentration was increased, the bridge appeared to be broken, and PDI bonded to the gold particle only via one of its two isocyanide groups. For the 57- and 97-nm particles, however, the nu(NC)(free) stretching band in the SERS spectrum almost disappeared, even at a high bulk concentration of PDI, differently from the case of the smaller sizes (14, 23, and 40 nm). The 57- and 97-nm particles appeared to cross-link through the pendent isocyanide group even at a high bulk concentration. UV-vis absorption spectra indicated that PDI appeared to aggregate more extensively with increasing size in agreement with Raman data. Our result shows an example that the adsorption scheme of an aromatic diisocyanide may be varied depending on particle size as well as the bulk concentration.

Binding of aromatic isocyanides on gold nanoparticle surfaces investigated by surface-enhanced Raman scattering

The adsorption structure and binding of phenyl isocyanide (PNC), 2,6-dimethyl phenyl isocyanide (DMPNC), and benzyl isocyanide (BZI) on gold nanoparticle surfaces have been studied by means of surface-enhanced Raman scattering (SERS). PNC, DMPNC, and BZI have been found to adsorb on gold assuming a standing geometry with respect to the surfaces. The presence of the nu(CH) band in the SERS spectra denotes a vertical orientation of the phenyl ring of PNC, DMPNC, and BZI on Au. The lack of a substantial red shift and significant band broadening of the ring breathing modes implied that a direct ring pi orbital interaction with metal substrates should be quite low. For PNC, the band ascribed to the C-NC stretching vibration was found to almost disappear after adsorption on Au. On the other hand, the C-NC band remained quite strong for DMPNC after adsorption. This result suggests a rather bent angle of C-N[triple bond]C: for the nitrogen atom of the NC binding group on the surfaces, whereas a linear angle of C-N[triple bond]C: should be more favorable on gold surfaces due to an intramolecular steric hindrance of its two methyl groups. SERS of BZI on gold nanoparticles also supports a bent angle of :C[triple bond]N-CH2 for its nitrogen atom, suggesting a preference of sp3 (or sp2) hybridization for the nitrogen atom.