1
|
Dorčák V, Kroutil O, Kabeláč M, Janata J, Vacek J. Cysteamine Chemisorption at Mercury-Solution Interfaces in the Context of Redox and Microdissociation Equilibria. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:6253-6260. [PMID: 38489512 DOI: 10.1021/acs.langmuir.3c03744] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/17/2024]
Abstract
The redox behavior and chemisorption of cysteamine (CA) at a charged mercury surface are described, with an emphasis on its acid-base properties supported by molecular dynamics and quantum mechanical calculations. It was found that CA forms chemisorbed layers on the surface of the mercury electrode. The formation of Hg-CA complexes is connected to mercury disproportionation, as reflected in peaks SII and SI at potentials higher than the electrode potential of zero charge (p.z.c.). Both the process of chemisorption of CA and its consequent redox transformation are proton-dependent. Also, depending on the protonation of CA, the formation of typical populations of chemisorbed conformers can be observed. In addition, cystamine (CA disulfide dimer) can be reduced on the mercury surface. Between the potentials of this reduction and peak SI, the p.z.c. of the electrode used can be found. Furthermore, CA can serve as an LMW catalyst for hydrogen evolution. The mechanistic insights presented here can be used for follow-up research on CA chemisorption and targeted modification of other metallic surfaces.
Collapse
Affiliation(s)
- Vlastimil Dorčák
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, Olomouc 775 15, Czech Republic
| | - Ondřej Kroutil
- Central European Institute of Technology, Masaryk University, Kamenice 5, Brno 625 00, Czech Republic
| | - Martin Kabeláč
- Department of Chemistry, Faculty of Science, University of South Bohemia, Branisovska 31, Ceske Budejovice 370 05, Czech Republic
| | - Jiří Janata
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Jan Vacek
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, Olomouc 775 15, Czech Republic
| |
Collapse
|
2
|
Vacek J, Zatloukalová M, Dorčák V, Cifra M, Futera Z, Ostatná V. Electrochemistry in sensing of molecular interactions of proteins and their behavior in an electric field. Mikrochim Acta 2023; 190:442. [PMID: 37847341 PMCID: PMC10582152 DOI: 10.1007/s00604-023-05999-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Accepted: 09/12/2023] [Indexed: 10/18/2023]
Abstract
Electrochemical methods can be used not only for the sensitive analysis of proteins but also for deeper research into their structure, transport functions (transfer of electrons and protons), and sensing their interactions with soft and solid surfaces. Last but not least, electrochemical tools are useful for investigating the effect of an electric field on protein structure, the direct application of electrochemical methods for controlling protein function, or the micromanipulation of supramolecular protein structures. There are many experimental arrangements (modalities), from the classic configuration that works with an electrochemical cell to miniaturized electrochemical sensors and microchip platforms. The support of computational chemistry methods which appropriately complement the interpretation framework of experimental results is also important. This text describes recent directions in electrochemical methods for the determination of proteins and briefly summarizes available methodologies for the selective labeling of proteins using redox-active probes. Attention is also paid to the theoretical aspects of electron transport and the effect of an external electric field on the structure of selected proteins. Instead of providing a comprehensive overview, we aim to highlight areas of interest that have not been summarized recently, but, at the same time, represent current trends in the field.
Collapse
Affiliation(s)
- Jan Vacek
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, 77515, Olomouc, Czech Republic.
| | - Martina Zatloukalová
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, 77515, Olomouc, Czech Republic
| | - Vlastimil Dorčák
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, 77515, Olomouc, Czech Republic
| | - Michal Cifra
- Institute of Photonics and Electronics of the Czech Academy of Sciences, Chaberska 1014/57, 18200, Prague, Czech Republic
| | - Zdeněk Futera
- Faculty of Science, University of South Bohemia, Branisovska 1760, 37005, Ceske Budejovice, Czech Republic
| | - Veronika Ostatná
- Institute of Biophysics, The Czech Academy of Sciences, v.v.i., Kralovopolska 135, 61200, Brno, Czech Republic
| |
Collapse
|
3
|
Havran L, Vacek J, Dorčák V. Free and Bound Histidine in Reactions at Mercury Electrode. J Electroanal Chem (Lausanne) 2022. [DOI: 10.1016/j.jelechem.2022.116336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
4
|
Hesko O, Fojta M, Špaček J. A simple electroanalysis of polyG RNA in mixtures with 3′,5′-cyclic guanosine monophosphate achieved by selective desorption of the monomers from the electrode surface. J Electroanal Chem (Lausanne) 2021. [DOI: 10.1016/j.jelechem.2021.115773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
5
|
Moscoso R, Álvarez-Lueje A, Squella J. Nanostructured interfaces containing MWCNT and nitro aromatics: A new tool to determine Nimesulide. Microchem J 2020. [DOI: 10.1016/j.microc.2020.105361] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
|
6
|
Trefulka M, Ostatná V. Cyclic and square wave voltammetry of chitooligosaccharides modified by osmium(VI) tetramethylethylenediamine. Bioelectrochemistry 2020; 133:107494. [PMID: 32120319 DOI: 10.1016/j.bioelechem.2020.107494] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2019] [Accepted: 02/22/2020] [Indexed: 11/18/2022]
Abstract
Compounds containing vicinal diol (glycol) groups, including saccharides, could be modified with sixvalent osmium complexes with nitrogenous ligands, particularly with N,N,N',N'-tetramethylethylenediamine (Os(VI)tem). The modification products are electrochemically active. Here we show that aminosaccharides can also be modified by Os(VI)tem. We studied chitosan oligosaccharides in their acetylated and deacetylated form in 0.2 M Na-phosphate, pH 6.9. Deacetylated chitosan oligosaccharides with free amino groups modified by Os(VI)tem yielded two peaks (peak I' at -0.15 V and peak II' at about -0.38 V) despite the fact that these oligomers contain only one glycol group on the non-reducing end of the molecule. The electrochemical behavior of Os(VI)tem modified deacetylated chitosan oligomers differs from Os(VI)tem modified simple saccharides, containing only glycol groups, predominantly in peak I'. Our results suggest that free amino groups are involved in Os(VI)tem modification of chitosan oligomers.
Collapse
Affiliation(s)
- Mojmír Trefulka
- Institute of Biophysics, The Czech Academy of Sciences, Královopolská 135, 61265 Brno, Czech Republic
| | - Veronika Ostatná
- Institute of Biophysics, The Czech Academy of Sciences, Královopolská 135, 61265 Brno, Czech Republic.
| |
Collapse
|
7
|
Římanková L, Ostatná V, Bartošík M. Intrinsic Electrocatalysis of RNA as a Label‐free and Reagent‐less Tool for Detection of MicroRNAs. ELECTROANAL 2019. [DOI: 10.1002/elan.201900241] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Ludmila Římanková
- Institute of Biophysics of the Czech Academy of Sciences Královopolská 135 612 65 Brno Czech Republic
| | - Veronika Ostatná
- Institute of Biophysics of the Czech Academy of Sciences Královopolská 135 612 65 Brno Czech Republic
| | - Martin Bartošík
- RECAMO, Masaryk Memorial Cancer Institute Žlutý kopec 7 656 53 Brno Czech Republic
| |
Collapse
|
8
|
Zatloukalova M, Mojovic M, Pavicevic A, Kabelac M, Freeman BA, Pekarova M, Vacek J. Redox properties and human serum albumin binding of nitro-oleic acid. Redox Biol 2019; 24:101213. [PMID: 31170679 PMCID: PMC6554544 DOI: 10.1016/j.redox.2019.101213] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2019] [Revised: 04/30/2019] [Accepted: 05/01/2019] [Indexed: 12/27/2022] Open
Abstract
Nitro-fatty acids modulate inflammatory and metabolic stress responses, thus displaying potential as new drug candidates. Herein, we evaluate the redox behavior of nitro-oleic acid (NO2-OA) and its ability to bind to the fatty acid transporter human serum albumin (HSA). The nitro group of NO2-OA underwent electrochemical reduction at -0.75 V at pH 7.4 in an aqueous milieu. Based on observations of the R-NO2 reduction process, the stability and reactivity of NO2-OA was measured in comparison to oleic acid (OA) as the negative control. These electrochemically-based results were reinforced by computational quantum mechanical modeling. DFT calculations indicated that both the C9-NO2 and C10-NO2 positional isomers of NO2-OA occurred in two conformers with different internal angles (69° and 110°) between the methyl- and carboxylate termini. Both NO2-OA positional isomers have LUMO energies of around -0.7 eV, affirming the electrophilic properties of fatty acid nitroalkenes. In addition, the binding of NO2-OA and OA with HSA revealed a molar ratio of ~7:1 [NO2-OA]:[HSA]. These binding experiments were performed using both an electrocatalytic approach and electron paramagnetic resonance (EPR) spectroscopy using 16-doxyl stearic acid. Using a Fe(DTCS)2 spin-trap, EPR studies also showed that the release of the nitro moiety of NO2-OA resulted in the formation of nitric oxide radical. Finally, the interaction of NO2-OA with HSA was monitored via Tyr and Trp residue electro-oxidation. The results indicate that not only non-covalent binding but also NO2-OA-HSA adduction mechanisms should be taken into consideration. This study of the redox properties of NO2-OA is applicable to the characterization of other electrophilic mediators of biological and pharmacological relevance.
Collapse
Affiliation(s)
- Martina Zatloukalova
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, Olomouc 775 15, Czech Republic
| | - Milos Mojovic
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, Belgrade, Serbia
| | - Aleksandra Pavicevic
- Faculty of Physical Chemistry, University of Belgrade, Studentski trg 12-16, Belgrade, Serbia
| | - Martin Kabelac
- Department of Chemistry, Faculty of Science, University of South Bohemia, Branisovska 31, Ceske Budejovice 370 05, Czech Republic
| | - Bruce A Freeman
- Department of Pharmacology and Chemical Biology, University of Pittsburgh School of Medicine, Pittsburgh PA, 15261, USA
| | - Michaela Pekarova
- The Czech Academy of Sciences, Institute of Biophysics, Kralovopolska 135, Brno 612 65, Czech Republic
| | - Jan Vacek
- Department of Medical Chemistry and Biochemistry, Faculty of Medicine and Dentistry, Palacky University, Hnevotinska 3, Olomouc 775 15, Czech Republic; The Czech Academy of Sciences, Institute of Biophysics, Kralovopolska 135, Brno 612 65, Czech Republic.
| |
Collapse
|
9
|
Paleček E, Heyrovský M, Dorčák V. J. Heyrovský's Oscillographic Polarography. Roots of Present Chronopotentiometric Analysis of Biomacromolecules. ELECTROANAL 2018. [DOI: 10.1002/elan.201800109] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Emil Paleček
- Institute of Biophysics of the CAS; Královopolská 135 612 65 Brno Czech Republic
| | - Michael Heyrovský
- J. Heyrovský Institute of Physical Chemistry of the CAS; Dolejškova 2155/3 182 23 Prague 8 Czech Republic
| | - Vlastimil Dorčák
- Institute of Biophysics of the CAS; Královopolská 135 612 65 Brno Czech Republic
| |
Collapse
|
10
|
Strmečki S, Paleček E. Adsorption/desorption of biomacromolecules involved in catalytic hydrogen evolution. Bioelectrochemistry 2017; 120:87-93. [PMID: 29197257 DOI: 10.1016/j.bioelechem.2017.11.013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2017] [Revised: 11/23/2017] [Accepted: 11/25/2017] [Indexed: 11/19/2022]
Abstract
Previously, it has been shown that proteins and some polysaccharides (PSs) catalyse hydrogen evolution, producing electrochemical signals on mercury electrodes. The catalytic hydrogen evolution reaction (CHER) of the above-mentioned biomacromolecules was studied by voltammetric and chronopotentiometric stripping (CPS) methods. To obtain more information about electrode processes involving CHER, here we used protein such as BSA, and chitosan as a PS; in addition, we investigated dextran as a control PS not involved in CHER. We studied biomacromolecules by phase-sensitive alternating current (AC) voltammetry. Using phase-in AC voltammetry, for CHER-involved biomacromolecules we observed a CHER peak at highly negative potentials, similar to that observed with other voltammetric and CPS methods. On the other hand, by means of the adsorption/desorption processes studied in phase-out AC voltammetry, we uncovered a sharp and narrow decrease of capacitive current in the potential range of the CHER peak, denominated as the tensammetric minimum. This minimum was closely related to the CHER peak, as demonstrated by similar dependences on specific conditions affecting the CHER peak such as buffer capacity and pH. A tensammetric minimum was not observed for dextran. Our results suggest specific organization of biopolymer layers at negative potentials observed only in biomacromolecules involved in CHER.
Collapse
Affiliation(s)
- Slađana Strmečki
- Ruđer Bošković Institute, Division for Marine and Environmental Research, Bijenička 54, 10 000 Zagreb, Croatia.
| | - Emil Paleček
- Institute of Biophysics, Academy of the Sciences of the Czech Republic, v.v.i., Kralovopolska 135, 612 65 Brno, Czech Republic
| |
Collapse
|
11
|
Distinguishing glycan isomers by voltammetry. Modification of 2,3-sialyllactose and 2,6-sialyllactose by osmium(VI) complexes. Electrochem commun 2017. [DOI: 10.1016/j.elecom.2017.10.014] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
|
12
|
Electrochemical and optical study of metallothionein interactions with prion proteins. J Pharm Biomed Anal 2017; 140:355-361. [DOI: 10.1016/j.jpba.2017.03.044] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2017] [Revised: 03/13/2017] [Accepted: 03/20/2017] [Indexed: 01/23/2023]
|
13
|
|
14
|
Paleček E, Tkáč J, Bartošík M, Bertók T, Ostatná V, Paleček J. Electrochemistry of nonconjugated proteins and glycoproteins. Toward sensors for biomedicine and glycomics. Chem Rev 2015; 115:2045-108. [PMID: 25659975 PMCID: PMC4360380 DOI: 10.1021/cr500279h] [Citation(s) in RCA: 215] [Impact Index Per Article: 23.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2014] [Indexed: 02/07/2023]
Affiliation(s)
- Emil Paleček
- Institute
of Biophysics Academy of Science of the Czech Republic, v.v.i., Královopolská
135, 612 65 Brno, Czech Republic
| | - Jan Tkáč
- Institute
of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, 845 38 Bratislava, Slovakia
| | - Martin Bartošík
- Regional
Centre for Applied Molecular Oncology, Masaryk
Memorial Cancer Institute, Žlutý kopec 7, 656 53 Brno, Czech Republic
| | - Tomáš Bertók
- Institute
of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, 845 38 Bratislava, Slovakia
| | - Veronika Ostatná
- Institute
of Biophysics Academy of Science of the Czech Republic, v.v.i., Královopolská
135, 612 65 Brno, Czech Republic
| | - Jan Paleček
- Central
European Institute of Technology, Masaryk
University, Kamenice
5, 625 00 Brno, Czech Republic
| |
Collapse
|
15
|
|
16
|
Bartosik M, Hrstka R, Palecek E, Vojtesek B. Adsorptive Transfer Stripping for Quick Electrochemical Determination of microRNAs in Total RNA Samples. ELECTROANAL 2014. [DOI: 10.1002/elan.201400449] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
|
17
|
Vacek J, Vrba J, Zatloukalová M, Kubala M. Electrochemical oxidation of proteins using ionic liquids as solubilizers, adsorption solvents and electrolytes. Electrochim Acta 2014. [DOI: 10.1016/j.electacta.2013.06.115] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
18
|
Strmečki S, Plavšić M. An ex situ electrocatalytic analysis of κ-, ι-, and λ-carrageenan on mercury electrode in seawater. J Electroanal Chem (Lausanne) 2014. [DOI: 10.1016/j.jelechem.2013.10.023] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
19
|
Trefulka M, Paleček E. Modification of Poly- and Oligosaccharides with Os(VI)pyridine. Voltammetry of the Os(VI) Adducts Obtained by Ligand Exchange. ELECTROANAL 2013. [DOI: 10.1002/elan.201300191] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
|
20
|
Trefulka M, Paleček E. Voltammetric determination of Os(VI)-modified oligosaccharides at nanomolar level. Bioelectrochemistry 2012; 88:8-14. [DOI: 10.1016/j.bioelechem.2012.04.005] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2012] [Revised: 04/24/2012] [Accepted: 04/24/2012] [Indexed: 01/05/2023]
|
21
|
Bartošík M, Fojta M, Paleček E. Electrochemical detection of 5-methylcytosine in bisulfite-treated DNA. Electrochim Acta 2012. [DOI: 10.1016/j.electacta.2012.05.115] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
|
22
|
Ostatná V, Černocká H, Kurzątkowska K, Paleček E. Native and denatured forms of proteins can be discriminated at edge plane carbon electrodes. Anal Chim Acta 2012; 735:31-6. [DOI: 10.1016/j.aca.2012.05.012] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2011] [Revised: 05/04/2012] [Accepted: 05/11/2012] [Indexed: 11/26/2022]
|
23
|
Ahmadi F, Jamali N. Study of DNA-Deltamethrin Binding by Voltammetry, Competitive Fluorescence, Thermal Denaturation, Circular Dichroism, and Atomic Force Microscopy Techniques. DNA Cell Biol 2012; 31:811-9. [DOI: 10.1089/dna.2011.1442] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Farhad Ahmadi
- Department of Medicinal Chemistry, Faculty of Pharmacy, Kermanshah University of Medical Sciences, Kermanshah, Islamic Republic of Iran
| | - Nasibeh Jamali
- Department of Medicinal Chemistry, Faculty of Pharmacy, Kermanshah University of Medical Sciences, Kermanshah, Islamic Republic of Iran
| |
Collapse
|
24
|
Affiliation(s)
- Emil Paleček
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, 612
65 Brno, Czech Republic
| | - Martin Bartošík
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, 612
65 Brno, Czech Republic
| |
Collapse
|
25
|
Paleček E, Bartošík M, Ostatná V, Trefulka M. Electrocatalysis in proteins, nucleic acids and carbohydrates. CHEM REC 2012; 12:27-45. [DOI: 10.1002/tcr.201100029] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2011] [Indexed: 11/06/2022]
|
26
|
Paleček E. Early stage of nucleic acid electrochemistry. Detection of DNA damage in X-ray-irradiated rats. ACTA ACUST UNITED AC 2012. [DOI: 10.1135/cccc2011151] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
First papers on electroactivity of DNA and RNA were published more then 50 years ago. For about 8 years oscillographic polarography at controlled a.c. (OP, proposed by J. Heyrovský already in 1941) was the method of choice for DNA analysis. Since approximately 1954 Robert Kalvoda developed OP for wide application in various fields. It is shown that already before 1960 it was possible to detect damage to DNA in X-ray-irradiated rats by means of OP. DNA samples from irradiated animals produced significantly larger OP anodic guanine signal indicating changes in the DNA structure. At present, radiation-induced strand breaks and damage to bases in DNA can be electrochemically detected at high sensitivity.
Collapse
|
27
|
|
28
|
Hocek M, Fojta M. Nucleobase modification as redox DNA labelling for electrochemical detection. Chem Soc Rev 2011; 40:5802-14. [PMID: 21625726 DOI: 10.1039/c1cs15049a] [Citation(s) in RCA: 110] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Basic aspects of DNA electrochemistry with a strong focus on the use of modified nucleobases as redox probes for electrochemical bioanalysis are reviewed. Intrinsic electrochemical properties of nucleobases in combination with artificial redox-active nucleobase modifications are frequently applied in this field. Synthetic approaches (both chemical and enzymatic) to base-modified nucleic acids are briefly summarized and their applications in redox labelling are discussed. Finally, analytical applications including DNA hybridization, primer extension, PCR, SNP typing, DNA damage and DNA-protein interaction analysis are presented (critical review, 91 references).
Collapse
Affiliation(s)
- Michal Hocek
- Institute of Organic Chemistry and Biochemistry, v.v.i., Academy of Sciences of the Czech Republic, Gilead Sciences & IOCB Research Center, Prague, Czech Republic.
| | | |
Collapse
|
29
|
Paleček E, Ostatná V, Černocká H, Joerger AC, Fersht AR. Electrocatalytic Monitoring of Metal Binding and Mutation-Induced Conformational Changes in p53 at Picomole Level. J Am Chem Soc 2011; 133:7190-6. [DOI: 10.1021/ja201006s] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Emil Paleček
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic
| | - Veronika Ostatná
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic
| | - Hana Černocká
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic
| | | | - Alan R. Fersht
- MRC Laboratory of Molecular Biology, Cambridge CB2 0QH, U.K
| |
Collapse
|
30
|
Paleček E, Trefulka M. Electrocatalytic detection of polysaccharides at picomolar concentrations. Analyst 2011; 136:321-6. [DOI: 10.1039/c0an00681e] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
|
31
|
|
32
|
Aladag N, Trnkova L, Kourilova A, Ozsoz M, Jelen F. Voltammetric Study of Aminopurines on Pencil Graphite Electrode in the Presence of Copper Ions. ELECTROANAL 2010. [DOI: 10.1002/elan.201000031] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
|
33
|
Horáková P, Těsnohlídková L, Havran L, Vidláková P, Pivoňková H, Fojta M. Determination of the Level of DNA Modification with Cisplatin by Catalytic Hydrogen Evolution at Mercury-Based Electrodes. Anal Chem 2010; 82:2969-76. [DOI: 10.1021/ac902987x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Petra Horáková
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic, and Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Lucie Těsnohlídková
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic, and Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Luděk Havran
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic, and Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Pavlína Vidláková
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic, and Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Hana Pivoňková
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic, and Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| | - Miroslav Fojta
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Královopolská 135, 612 65 Brno, Czech Republic, and Department of Analytical Chemistry, Faculty of Chemical Technology, University of Pardubice, Studentská 573, 532 10 Pardubice, Czech Republic
| |
Collapse
|
34
|
Paleček E, Heyrovský M, Janík B, Kaláb D, Pechan Z. From DC polarographic presodium wave of proteins to electrochemistry of biomacromolecules. ACTA ACUST UNITED AC 2010. [DOI: 10.1135/cccc2009511] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
History of electrochemistry of proteins and nucleic acids is briefly reviewed. The ability of proteins to catalyze hydrogen evolution at Hg electrodes was discovered almost 80 years ago in J. Heyrovský’s laboratory. This phenomenon was not sufficiently appreciated for several decades. Recently it has been shown that using constant current chronopotentiometric stripping (CPS) with hanging mercury drop, solid amalgam or Hg-film electrodes the CPS peak H is obtained with nanomolar concentrations of peptides and proteins. This peak is derived from the presodium wave but it has some new properties useful in protein research. It is sensitive to changes in protein structures and to protein redox states, representing a new tool for protein analysis applicable in biomedicine. Electroactivity of nucleic acids was discovered about 50 years ago. Electrochemistry of DNA and RNA is now a booming field because of its potential use in sensors for DNA hybridization and DNA damage. Quite recently it has been shown that electrochemistry can be applied also in polysaccharide analysis. A review with 99 references.
Collapse
|
35
|
Vacek J, Havran L, Fojta M. The reduction of doxorubicin at a mercury electrode and monitoring its interaction with DNA using constant current chronopotentiometry. ACTA ACUST UNITED AC 2010. [DOI: 10.1135/cccc2009512] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
In this report, voltammetry with linear scan and chronopotentiometric stripping (CPS) with constant current were used for the analysis of doxorubicin (DOX) at a hanging mercury drop electrode (HMDE). CPS was used for the study of DOX in situ electrochemical reduction in adsorbed state and for ex situ (adsorptive transfer) analysis of the drug. For the first time, CPS was used to study the reversible reduction of the DOX quinine moiety at –0.45 V (vs Ag|AgCl|3 M KCl) as well as electrode processes giving rise to an irreversible signal around –1.45 V at the HMDE in 0.2 M acetate or Britton–Robinson buffers at different pH values. The dependence of the latter signal on pH revealed involvement of protonation equilibria; however, neither CV nor CPS data confirmed the catalytic character of the electrode reaction previously suggested by other authors. The CPS method was also applied to monitor the DOX interaction with double- (ds) and single-stranded (ss) DNA. In the presence of dsDNA, more pronounced changes in DOX signal intensity were observed, in agreement with a strong intercalation of the DOX redox centre into the DNA double helix.
Collapse
|
36
|
Dai H, Lin Y, Xu H, Yang C, Chen G. Direct electrochemistry of thermally denatured calf thymus DNA on a poly(methyl methacrylate)–graphite microcomposite electrode. Analyst 2010; 135:2913-7. [DOI: 10.1039/c0an00485e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
37
|
Vacek J, Havran L, Fojta M. Ex situ Voltammetry and Chronopotentiometry of Doxorubicin at a Pyrolytic Graphite Electrode: Redox and Catalytic Properties and Analytical Applications. ELECTROANAL 2009. [DOI: 10.1002/elan.200904646] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
|
38
|
Trefulka M, Paleček E. Voltammetry of Os(VI)-Modified Polysaccharides at Carbon Electrodes. ELECTROANAL 2009. [DOI: 10.1002/elan.200904658] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
|
39
|
Paleček E, Trefulka M, Fojta M. End-labeling of peptide nucleic acid with osmium complex. Voltammetry at carbon and mercury electrodes. Electrochem commun 2009. [DOI: 10.1016/j.elecom.2008.11.049] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022] Open
|
40
|
|
41
|
Huska D, Adam V, Babula P, Hrabeta J, Stiborova M, Eckschlager T, Trnkova L, Kizek R. Square-Wave Voltammetry as a Tool for Investigation of Doxorubicin Interactions with DNA Isolated from Neuroblastoma Cells. ELECTROANAL 2009. [DOI: 10.1002/elan.200804429] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
42
|
Krizkova S, Fabrik I, Adam V, Kukacka J, Prusa R, Trnkova L, Strnadel J, Horak V, Kizek R. Effects of Reduced Glutathione, Surface Active Agents, and Ionic Strength on the Detection of Metallothioneins by Using of Brdicka Reaction. ELECTROANAL 2009. [DOI: 10.1002/elan.200804406] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
43
|
Sun W, Li Y, Gao H, Jiao K. Direct electrochemistry of double stranded DNA on ionic liquid modified carbon paste electrode. Mikrochim Acta 2009. [DOI: 10.1007/s00604-009-0135-5] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
44
|
Paleček E, Ostatná V. Ionic strength-dependent structural transition of proteins at electrode surfaces. Chem Commun (Camb) 2009:1685-7. [DOI: 10.1039/b822274f] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
45
|
Paleček E, Ostatná V. Potential-dependent surface denaturation of BSA in acid media. Analyst 2009; 134:2076-80. [DOI: 10.1039/b912602c] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
|
46
|
Jelen F, Olejniczak AB, Kourilova A, Lesnikowski ZJ, Palecek E. Electrochemical DNA Detection Based on the Polyhedral Boron Cluster Label. Anal Chem 2008; 81:840-4. [DOI: 10.1021/ac801235b] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Frantisek Jelen
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, CZ-612 65 Brno, Czech Republic, and Institute of Medical Biology, Polish Academy of Sciences, Laboratory of Molecular Virology & Biological Chemistry, 106 Lodowa Street, PL-93232 Lodz, Poland
| | - Agnieszka B. Olejniczak
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, CZ-612 65 Brno, Czech Republic, and Institute of Medical Biology, Polish Academy of Sciences, Laboratory of Molecular Virology & Biological Chemistry, 106 Lodowa Street, PL-93232 Lodz, Poland
| | - Alena Kourilova
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, CZ-612 65 Brno, Czech Republic, and Institute of Medical Biology, Polish Academy of Sciences, Laboratory of Molecular Virology & Biological Chemistry, 106 Lodowa Street, PL-93232 Lodz, Poland
| | - Zbigniew J. Lesnikowski
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, CZ-612 65 Brno, Czech Republic, and Institute of Medical Biology, Polish Academy of Sciences, Laboratory of Molecular Virology & Biological Chemistry, 106 Lodowa Street, PL-93232 Lodz, Poland
| | - Emil Palecek
- Institute of Biophysics, Academy of Sciences of the Czech Republic, v.v.i., Kralovopolska 135, CZ-612 65 Brno, Czech Republic, and Institute of Medical Biology, Polish Academy of Sciences, Laboratory of Molecular Virology & Biological Chemistry, 106 Lodowa Street, PL-93232 Lodz, Poland
| |
Collapse
|
47
|
Huska D, Hubalek J, Adam V, Kizek R. Miniaturized electrochemical detector as a tool for detection of DNA amplified by PCR. Electrophoresis 2008; 29:4964-71. [DOI: 10.1002/elps.200800445] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
|
48
|
Diopan V, Babula P, Shestivska V, Adam V, Zemlicka M, Dvorska M, Hubalek J, Trnkova L, Havel L, Kizek R. Electrochemical and spectrometric study of antioxidant activity of pomiferin, isopomiferin, osajin and catalposide. J Pharm Biomed Anal 2008; 48:127-33. [DOI: 10.1016/j.jpba.2008.05.025] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2008] [Revised: 04/10/2008] [Accepted: 05/14/2008] [Indexed: 11/16/2022]
|
49
|
Stanić Z, Girousi S. Electrochemical study of the interaction between dsDNA and copper(II) using carbon paste and hanging mercury drop electrodes. Mikrochim Acta 2008. [DOI: 10.1007/s00604-008-0083-5] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
50
|
Silva FB, Vieira SN, Goulart LR, Boodts JFC, Brito-Madurro AG, Madurro JM. Electrochemical Investigation of oligonucleotide-DNA hybridization on poly(4-methoxyphenethylamine). Int J Mol Sci 2008; 9:1173-1187. [PMID: 19325797 PMCID: PMC2635724 DOI: 10.3390/ijms9071173] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2008] [Revised: 06/11/2008] [Accepted: 06/12/2008] [Indexed: 11/19/2022] Open
Abstract
This work describes the immobilization of purine and pyrimidine bases and immobilization/hybridization of synthetic oligonucleotides on graphite electrodes modified with poly(4-methoxyphenethylamine) produced in acid medium. The immobilization of adenine, guanine, cytosine and thymine on these modified electrodes was efficient, producing characteristic peaks. Another relevant observation is that, according to the literature, pyrimidine bases, cytosine and thymine are more difficult to detect. However, when immobilized onto the poly(4-methoxyphenethylamine), a significant increase in the magnitude of the current was obtained. The observation of the hybridization between the poly(GA) probe and its complementary, poly(CT) target, was possible by monitoring the guanosine and adenosine peaks or through methylene blue indicator, using differential pulse voltammetry. Hybridization results in a decrease of the peak current of guanosine and adenosine or the signal of methylene blue accumulated on the modified electrode surface. The hybridization with the complementary target was also investigated by electrochemical impedance spectroscopy. The results showed a significant modification in the Nyquist plot, after addition of the complementary target, with increase of the charge transference resistance.
Collapse
Affiliation(s)
- Francielle B Silva
- Institute of Chemistry, Federal University of Uberlândia, Uberlândia, 38400-902, Brazil
| | - Sabrina N Vieira
- Institute of Chemistry, Federal University of Uberlândia, Uberlândia, 38400-902, Brazil
| | - Luiz R Goulart
- Institute of Genetics and Biochemistry, Federal Univ. of Uberlândia, Uberlândia, 38400-902, Brazil
| | - Julien F C Boodts
- Institute of Chemistry, Federal University of Uberlândia, Uberlândia, 38400-902, Brazil
| | - Ana G Brito-Madurro
- Institute of Chemistry, Federal University of Uberlândia, Uberlândia, 38400-902, Brazil
| | - João M Madurro
- Institute of Chemistry, Federal University of Uberlândia, Uberlândia, 38400-902, Brazil
| |
Collapse
|