1
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Sarkar A, Namboodiri V, Kumbhakar M. Single-Molecule Spectral Fluctuation Originates from the Variation in Dipole Orientation Connected to Accessible Vibrational Modes. J Phys Chem Lett 2024; 15:11112-11118. [PMID: 39475549 DOI: 10.1021/acs.jpclett.4c02806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2024]
Abstract
Fluctuation in fluorescence emission of an immobilized single molecule is typically ascribed to the chromophore's intrinsic structural conformations and the influence of local environmental factors. Despite extensive research since its initial observation, a direct connection between these spectral fluctuations and the rearrangement of emission dipole orientations has remained elusive. Here, we elucidate this fundamental molecular behavior and its underlying mechanisms by employing unique single-molecule multidimensional tracking to simultaneously monitor both the emission spectrum and the three-dimensional dipole orientation of individual fluorophores. We present compelling evidence demonstrating a correlation between spectral fluctuations and dipolar rearrangements at room temperature. Our observations reveal that variations in the radiative relaxation probabilities among different vibronic emission bands, coupled with the interaction of associated vibrational modes, drive these spectral fluctuations. We identify significant out-of-plane dipole reorientations during pronounced spectral fluctuations, commonly known as spectral jumps, which primarily arise from transitions between dominant vibrational modes. Furthermore, we emphasize the potential for constructing vibrational spectra and optical nanoscopy with vibrational specificity, leveraging the vibronic emissions from single emitters.
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Affiliation(s)
- Aranyak Sarkar
- Radiation & Photochemistry Division, Bhabha Atomic Research Center, Mumbai, Maharashtra 400085, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai, Maharashtra 400094, India
| | - Vinu Namboodiri
- Radiation & Photochemistry Division, Bhabha Atomic Research Center, Mumbai, Maharashtra 400085, India
| | - Manoj Kumbhakar
- Radiation & Photochemistry Division, Bhabha Atomic Research Center, Mumbai, Maharashtra 400085, India
- Homi Bhabha National Institute, Training School Complex, Anushaktinagar, Mumbai, Maharashtra 400094, India
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2
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Shafi H, Lora AJ, Donow HM, Dickinson SE, Wondrak GT, Chow HHS, Curiel-Lewandrowski C, Mansour HM. Comprehensive Advanced Physicochemical Characterization and In Vitro Human Cell Culture Assessment of BMS-202: A Novel Inhibitor of Programmed Cell Death Ligand. Pharmaceutics 2024; 16:1409. [PMID: 39598533 PMCID: PMC11597381 DOI: 10.3390/pharmaceutics16111409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2024] [Revised: 10/25/2024] [Accepted: 10/29/2024] [Indexed: 11/29/2024] Open
Abstract
Background/Objectives: BMS-202, is a potent small molecule with demonstrated antitumor activity. The study aimed to comprehensively characterize the physical and chemical properties of BMS-202 and evaluate its suitability for topical formulation, focusing on uniformity, stability and safety profiles. Methods: A range of analytical techniques were employed to characterize BMS-202. Scanning Electron Microscopy (SEM) was used to assess morphology, Differential Scanning Calorimetry (DSC) provided insights of thermal behavior, and Hot-Stage Microscopy (HSM) corroborated these thermal behaviors. Molecular fingerprinting was conducted using Raman spectroscopy and Fourier Transform Infrared (FTIR) spectroscopy, with chemical uniformity of the batch further validated by mapping through FTIR and Raman microscopies. The residual water content was measured using Karl Fisher Coulometric titration, and vapor sorption isotherms examined moisture uptake across varying relative humidity levels. In vitro safety assessments involved testing with skin epithelial cell lines, such as HaCaT and NHEK, and Transepithelial Electrical Resistance (TEER) to evaluate barrier integrity. Results: SEM revealed a distinctive needle-like morphology, while DSC indicated a sharp melting point at 110.90 ± 0.54 ℃ with a high enthalpy of 84.41 ± 0.38 J/g. HSM confirmed the crystalline-to-amorphous transition at the melting point. Raman and FTIR spectroscopy, alongside chemical imaging, confirmed chemical uniformity as well as validated the batch consistency. A residual water content of 2.76 ± 1.37 % (w/w) and minimal moisture uptake across relative humidity levels demonstrated its low hygroscopicity and suitability for topical formulations. Cytotoxicity testing showed dose-dependent reduction in skin epithelial cell viability at high concentrations (100 µM and 500 µM), with lower doses (0.1 µM to 10 µM) demonstrating acceptable safety. TEER studies indicated that BMS-202 does not disrupt the HaCaT cell barrier function. Conclusions: The findings from this study establish that BMS-202 has promising physicochemical and in vitro characteristics at therapeutic concentrations for topical applications, providing a foundation for future formulation development focused on skin-related cancers or localized immune modulation.
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Affiliation(s)
- Hasham Shafi
- Florida International University Center for Translational Science, Port St. Lucie, FL 34987, USA
| | - Andrea J. Lora
- Florida International University Center for Translational Science, Port St. Lucie, FL 34987, USA
| | - Haley M. Donow
- Florida International University Center for Translational Science, Port St. Lucie, FL 34987, USA
| | - Sally E. Dickinson
- University of Arizona Cancer Center, University of Arizona, Tucson, AZ 85724, USA (G.T.W.)
- Department of Pharmacology, The University of Arizona College of Medicine, Tucson, AZ 85724, USA
| | - Georg T. Wondrak
- University of Arizona Cancer Center, University of Arizona, Tucson, AZ 85724, USA (G.T.W.)
- Department of Pharmacology and Toxicology, The University of Arizona College of Pharmacy, Tucson, AZ 85721, USA
| | - H.-H. Sherry Chow
- University of Arizona Cancer Center, University of Arizona, Tucson, AZ 85724, USA (G.T.W.)
- Division of Hematology and Oncology, Department of Medicine, The University of Arizona College of Medicine, Tucson, AZ 85724, USA
| | - Clara Curiel-Lewandrowski
- University of Arizona Cancer Center, University of Arizona, Tucson, AZ 85724, USA (G.T.W.)
- Division of Dermatology, Department of Medicine, The University of Arizona College of Medicine, Tucson, AZ 85724, USA
- BIO5 Institute, University of Arizona, Tucson, AZ 85724, USA
| | - Heidi M. Mansour
- Florida International University Center for Translational Science, Port St. Lucie, FL 34987, USA
- Department of Cellular & Molecular Medicine, Herbert Wertheim College of Medicine, Florida International University, Miami, FL 33199, USA
- Department of Environmental Health Sciences, Robert Stempel College of Public Health and Social Work, Florida International University, Miami, FL 33174, USA
- Department of Biomedical Engineering, College of Engineering and Computing, Florida International University, Miami, FL 33174, USA
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3
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Conti Nibali V, Sacchetti F, Paciaroni A, Petrillo C, Tarek M, D'Angelo G. Intra-protein interacting collective modes in the terahertz frequency region. J Chem Phys 2023; 159:161101. [PMID: 37870134 DOI: 10.1063/5.0142381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 09/25/2023] [Indexed: 10/24/2023] Open
Abstract
Understanding how proteins work requires a thorough understanding of their internal dynamics. Proteins support a wide range of motions, from the femtoseconds to seconds time scale, relevant to crucial biological functions. In this context, the term "protein collective dynamics" refers to the complex patterns of coordinated motions of numerous atoms throughout the protein in the sub-picosecond time scale (terahertz frequency region). It is hypothesized that these dynamics have a substantial impact on the regulation of functional dynamical mechanisms, including ligand binding and allosteric signalling, charge transport direction, and the regulation of thermodynamic and thermal transport properties. Using the theoretical framework of hydrodynamics, the collective dynamics of proteins had previously been described in a manner akin to that of simple liquids, i.e. in terms of a single acoustic-like excitation, related to intra-protein vibrational motions. Here, we employ an interacting-mode model to analyse the results from molecular dynamics simulations and we unveil that the vibrational landscape of proteins is populated by multiple acoustic-like and low-frequency optic-like modes, with mixed symmetry and interfering with each other. We propose an interpretation at the molecular level of the observed scenario that we relate to the side-chains and the hydrogen-bonded networks dynamics. The present insights provide a perspective for understanding the molecular mechanisms underlying the energy redistribution processes in the interior of proteins.
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Affiliation(s)
- Valeria Conti Nibali
- Department of Mathematical and Computational Sciences, Physical Science and Earth Science, Messina University, Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy
| | - Francesco Sacchetti
- Department of Physics and Geology, Perugia University, Via Alessandro Pascoli, I-06123 Perugia, Italy
| | - Alessandro Paciaroni
- Department of Physics and Geology, Perugia University, Via Alessandro Pascoli, I-06123 Perugia, Italy
| | - Caterina Petrillo
- Department of Physics and Geology, Perugia University, Via Alessandro Pascoli, I-06123 Perugia, Italy
| | - Mounir Tarek
- Université de Lorraine, CNRS, LPCT, F-54000 Nancy, France
| | - Giovanna D'Angelo
- Department of Mathematical and Computational Sciences, Physical Science and Earth Science, Messina University, Viale Ferdinando Stagno D'Alcontres 31, 98166 Messina, Italy
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Terrones O, Olazar-Intxausti J, Anso I, Lorizate M, Nieto-Garai JA, Contreras FX. Raman Spectroscopy as a Tool to Study the Pathophysiology of Brain Diseases. Int J Mol Sci 2023; 24:2384. [PMID: 36768712 PMCID: PMC9917237 DOI: 10.3390/ijms24032384] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 01/16/2023] [Accepted: 01/18/2023] [Indexed: 01/27/2023] Open
Abstract
The Raman phenomenon is based on the spontaneous inelastic scattering of light, which depends on the molecular characteristics of the dispersant. Therefore, Raman spectroscopy and imaging allow us to obtain direct information, in a label-free manner, from the chemical composition of the sample. Since it is well established that the development of many brain diseases is associated with biochemical alterations of the affected tissue, Raman spectroscopy and imaging have emerged as promising tools for the diagnosis of ailments. A combination of Raman spectroscopy and/or imaging with tagged molecules could also help in drug delivery and tracing for treatment of brain diseases. In this review, we first describe the basics of the Raman phenomenon and spectroscopy. Then, we delve into the Raman spectroscopy and imaging modes and the Raman-compatible tags. Finally, we center on the application of Raman in the study, diagnosis, and treatment of brain diseases, by focusing on traumatic brain injury and ischemia, neurodegenerative disorders, and brain cancer.
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Affiliation(s)
- Oihana Terrones
- Department of Biochemistry and Molecular Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
| | - June Olazar-Intxausti
- Department of Biochemistry and Molecular Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Itxaso Anso
- Department of Biochemistry and Molecular Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
- Structural Glycobiology Laboratory, Biocruces Bizkaia Health Research Institute, Cruces University Hospital, 48903 Barakaldo, Spain
| | - Maier Lorizate
- Department of Biochemistry and Molecular Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Jon Ander Nieto-Garai
- Department of Biochemistry and Molecular Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Francesc-Xabier Contreras
- Department of Biochemistry and Molecular Biology, Faculty of Science and Technology, University of the Basque Country (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
- Instituto Biofisika (UPV/EHU, CSIC), Barrio Sarriena s/n, 48940 Leioa, Spain
- Ikerbasque, Basque Foundation of Science, 48011 Bilbao, Spain
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5
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Robotti E, Belay MH, Calà E, Benedetto A, Cerruti S, Pezzolato M, Pennisi F, Abete MC, Marengo E, Brizio P. Identification of Illicit Conservation Treatments in Fresh Fish by Micro-Raman Spectroscopy and Chemometric Methods. Foods 2023; 12:foods12030449. [PMID: 36765978 PMCID: PMC9913940 DOI: 10.3390/foods12030449] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2022] [Revised: 01/13/2023] [Accepted: 01/16/2023] [Indexed: 01/20/2023] Open
Abstract
In the field of food control for fresh products, the identification of foods subjected to illicit conservation treatments to extend their shelf life is fundamental. Fresh fish products are particularly subjected to this type of fraud due to their high commercial value and the fact that they often have to be transported over a long distance, keeping their organoleptic characteristics unaltered. Treatments of this type involve, e.g., the bleaching of the meat and/or the momentary abatement of the microbial load, while the degradation process continues. It is therefore important to find rapid methods that allow the identification of illicit treatments. The study presented here was performed on 24 sea bass samples divided into four groups: 12 controls (stored on ice in the fridge for 3 or 24 h), and 12 treated with a Cafodos-like solution for 3 or 24 h. Muscle and skin samples were then characterized using micro-Raman spectroscopy. The data were pre-processed by smoothing and taking the first derivative and then PLS-DA models were built to identify short- and long- term effects on the fish's muscle and skin. All the models provided the perfect classification of the samples both in fitting and cross-validation and an analysis of the bands responsible for the effects was also reported. To the best of the authors' knowledge, this is the first time Raman spectroscopy has been applied for the identification of a Cafodos-like illicit treatment, focusing on both fish muscle and skin evaluation. The procedure could pave the way for a future application directly on the market through the use of a portable device.
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Affiliation(s)
- Elisa Robotti
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy
- Correspondence: ; Tel.: +39-0131-360272
| | - Masho Hilawie Belay
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy
| | - Elisa Calà
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy
| | - Alessandro Benedetto
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy
| | - Simone Cerruti
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy
| | - Marzia Pezzolato
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy
| | - Francesco Pennisi
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy
| | - Maria Cesarina Abete
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy
| | - Emilio Marengo
- Department of Sciences and Technological Innovation, University of Piemonte Orientale, Viale Michel 11, 15121 Alessandria, Italy
| | - Paola Brizio
- Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d’Aosta, Via Bologna 148, 10154 Torino, Italy
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6
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Inoue M, Osada T, Hisada H, Koide T, Fukami T, Roy A, Carriere J. Quantitative Monitoring of Cocrystal Polymorphisms in Model Tablets Using Transmission Low-Frequency Raman Spectroscopy. J Pharm Sci 2023; 112:225-229. [PMID: 36126759 DOI: 10.1016/j.xphs.2022.09.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2022] [Revised: 09/11/2022] [Accepted: 09/12/2022] [Indexed: 11/19/2022]
Abstract
Cocrystallization is a technique for improving the physical properties of active pharmaceutical ingredients. However, cocrystals can transform into more stable polymorphs as well as dissociate to original materials. Therefore, an analytical technique is required to determine the polymorphic transformation quickly and accurately in tablets. The purpose of this study is to develop a method to monitor cocrystal polymorphs in model tablets using transmission low-frequency Raman spectroscopy. The tablets, consisting of only metastable polymorphs of caffeine-glutaric acid cocrystals, were stored under various relative humidity levels. The composition of the cocrystal polymorphs were calculated from a calibration curve relating the actual composition to the predicted values calculated by partial least squares regression processing of low-frequency Raman spectra. The metastable form gradually converted to a stable form, and polymorphic phase transformation occurred with increasing relative humidity. Ninety-six percent of the metastable form converted into a stable form stored at 25 °C after 3 h at 95% RH. In conclusion, transmission low-frequency Raman spectroscopy can be used to quantitatively monitor cocrystal polymorphs. This technique is one of the candidate techniques to quantifiably evaluate the physico-chemical stability of cocrystal polymorphs in tablets.
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Affiliation(s)
- Motoki Inoue
- Department of Molecular Pharmaceutics, Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan.
| | - Takumi Osada
- Department of Molecular Pharmaceutics, Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Hiroshi Hisada
- Department of Molecular Pharmaceutics, Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Tatsuo Koide
- National Institute of Health Sciences, 3-25-26, Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-9501, Japan
| | - Toshiro Fukami
- Department of Molecular Pharmaceutics, Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Anjan Roy
- Coherent Inc., 850 East, Duarte Road, Monrovia, California 91016, United States
| | - James Carriere
- Coherent Inc., 850 East, Duarte Road, Monrovia, California 91016, United States
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7
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Zhang MH, Xiao W, Wang WM, Zhang R, Zhang CL, Zhang XC, Zhang LL. Highly sensitive detection of broadband terahertz waves using aqueous salt solutions. OPTICS EXPRESS 2022; 30:39142-39151. [PMID: 36258461 DOI: 10.1364/oe.472753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
Water-based coherent detection of broadband terahertz (THz) wave has been recently proposed with superior performances, which can alleviate the limited detection bandwidth and high probe laser energy requirement in the solid- and air-based detection schemes, respectively. Here, we demonstrate that the water-based detection method can be extended to the aqueous salt solutions and the sensitivity can be significantly enhanced. The THz coherent detection signal intensity scales linearly with the third-order nonlinear susceptibility χ(3) or quadratically with the linear refractive index η0 of the aqueous salt solutions, while the incoherent detection signal intensity scales quadratically with χ(3) or quartically with η0, proving the underlying mechanism is the four-wave mixing. Both the coherent and incoherent detection signal intensities appear positive correlation with the solution concentration. These results imply that the liquid-based THz detection scheme could provide a new technique to measure χ(3) and further investigate the physicochemical properties in the THz band for various liquids.
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Urquidi O, Brazard J, LeMessurier N, Simine L, Adachi TBM. In situ optical spectroscopy of crystallization: One crystal nucleation at a time. Proc Natl Acad Sci U S A 2022; 119:e2122990119. [PMID: 35394901 PMCID: PMC9169808 DOI: 10.1073/pnas.2122990119] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2021] [Accepted: 03/03/2022] [Indexed: 11/29/2022] Open
Abstract
While crystallization is a ubiquitous and an important process, the microscopic picture of crystal nucleation is yet to be established. Recent studies suggest that the nucleation process can be more complex than the view offered by the classical nucleation theory. Here, we implement single crystal nucleation spectroscopy (SCNS) by combining Raman microspectroscopy and optical trapping induced crystallization to spectroscopically investigate one crystal nucleation at a time. Raman spectral evolution during a single glycine crystal nucleation from water, measured by SCNS and analyzed by a nonsupervised spectral decomposition technique, uncovered the Raman spectrum of prenucleation aggregates and their critical role as an intermediate species in the dynamics. The agreement between the spectral feature of prenucleation aggregates and our simulation suggests that their structural order emerges through the dynamic formation of linear hydrogen-bonded networks. The present work provides a strong impetus for accelerating the investigation of crystal nucleation by optical spectroscopy.
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Affiliation(s)
- Oscar Urquidi
- Department of Physical Chemistry, Sciences II, University of Geneva, 1211 Geneva, Switzerland
| | - Johanna Brazard
- Department of Physical Chemistry, Sciences II, University of Geneva, 1211 Geneva, Switzerland
| | | | - Lena Simine
- Department of Chemistry, McGill University, Montreal, QC H3A 0B8, Canada
| | - Takuji B. M. Adachi
- Department of Physical Chemistry, Sciences II, University of Geneva, 1211 Geneva, Switzerland
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9
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Yamamoto S, Ishiro S, Kessler J, Bouř P. Intense chiral signal from α-helical poly-L-alanine observed in low-frequency Raman optical activity. Phys Chem Chem Phys 2021; 23:26501-26509. [PMID: 34806737 DOI: 10.1039/d1cp04401j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Raman optical activity (ROA) spectral features reliably indicate the structure of peptides and proteins, but the signal is often weak. However, we observed significantly enhanced low-frequency bands for α-helical poly-L-alanine (PLA) in solution. The biggest ROA signal at ∼100 cm-1 is about 10 times stronger than higher-frequency bands described previously, which facilitates the detection. The low-frequency bands of PLA were compared to those of α-helical proteins. For PLA, density functional simulations well reproduced the experimental spectra and revealed that about 12 alanine residues within two turns of the α-helix generate the strong ROA band. Averaging based on molecular dynamics (MD) provided an even more realistic spectrum compared to the static model. The low-frequency bands could be largely related to a collective motion of the α-helical backbone, partially modulated by the solvent. Helical and intermolecular vibrational coordinates have been introduced and the helical unwinding modes were assigned to the strongest ROA signal at 101-128 cm-1. Further analysis indicated that the helically arranged amide and methyl groups are important for the strong chiral signal of PLA, while the local chiral centers CαH contribute in a minor way only. The strong low-frequency ROA can thus provide precious information about the motions of the peptide backbone and facilitate future protein studies.
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Affiliation(s)
- Shigeki Yamamoto
- Department of Chemistry, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
| | - Shota Ishiro
- Department of Chemistry, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic.
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, 16610 Prague, Czech Republic.
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10
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Ruiz-Capillas C, Herrero AM. Development of Meat Products with Healthier Lipid Content: Vibrational Spectroscopy. Foods 2021; 10:foods10020341. [PMID: 33562823 PMCID: PMC7914705 DOI: 10.3390/foods10020341] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Revised: 01/31/2021] [Accepted: 02/02/2021] [Indexed: 12/12/2022] Open
Abstract
This review focuses on the importance of developing meat products with healthier lipid content and strategies such as the use of structured lipids to develop these enriched products. The review also conducts a critical analysis of the use of vibrational spectroscopy as a tool to further these developments. Meat and meat products are extensively recognized and consumed in the world. They are an important nutritional contribution in our diet. However, their consumption has also been associated with some negative consequences for health due to some of its components. There are new trends in the design of healthy meat products focusing mainly on improving their composition. From among the different strategies, improving lipid content is the one that has received the most attention. A novel development is the formation of lipid materials based on structured lipids such emulsion gels (EGs) or oil-bulking agents (OBAs) that offer attractive applications in the reformulation of health-enhanced meat products. A deeper interpretation is required of the complicated relationship between the structure of their components and their properties in order to obtain structured lipids and healthier meat products with improved lipid content and acceptable characteristics. To this end, vibrational spectroscopy techniques (Raman and infrared spectroscopy) have been demonstrated to be suitable in the elucidation of the structural characteristics of lipid materials based on structured lipids (EGs or OBAs) and the corresponding reformulated health-enhanced meat products into which these fat replacers have been incorporated. Future research on these structures and how they correlate to certain technological properties could help in selecting the best lipid material to achieve specific technological properties in healthier meat products with improved lipid content.
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11
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Inoue M, Hisada H, Takatori K, Koide T, Fukami T, Roy A, Carriere J. Solid-State Analysis of Alpha-Cyclodextrin Inclusion Complexes Using Low-Frequency Raman Spectroscopy. Anal Chem 2021; 93:704-708. [PMID: 33284586 DOI: 10.1021/acs.analchem.0c03854] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A rapid and nondestructive analytical technique is critical for the analysis of cyclodextrin inclusion complexes in solid dosage forms. This study proposed a newly developed low-frequency Raman spectroscopy as a candidate technique for the analysis of cyclodextrin inclusion complexes. In this study, we selected a typical series of five crystalline cyclodextrin inclusion complexes and reported the usefulness of Raman spectroscopy for analyzing these inclusion complexes. Some inclusion complexes clearly differed from the raw materials in conventional Raman spectra. In another case, though specific differences were not observed between inclusion complexes and raw materials in conventional Raman spectra, clear differences were observed in low-frequency Raman spectra. Moreover, no characteristic differences between inclusion complexes consisting of different guest molecules were observed in conventional Raman spectra. The characteristic differences were observed only in low-frequency Raman spectra. Therefore, low-frequency Raman spectroscopy is a useful technique for solid-state analysis of crystalline inclusion complexes.
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Affiliation(s)
- Motoki Inoue
- Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Hiroshi Hisada
- Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Kazuhiko Takatori
- Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Tatsuo Koide
- National Institute of Health Sciences, 3-25-26, Tonomachi, Kawasaki-ku, Kawasaki, Kanagawa 210-9501, Japan
| | - Toshiro Fukami
- Meiji Pharmaceutical University, 2-522-1, Noshio, Kiyose, Tokyo 204-8588, Japan
| | - Anjan Roy
- Coherent Inc., 850 East, Duarte Road, Monrovia, California 91016, United States
| | - James Carriere
- Coherent Inc., 850 East, Duarte Road, Monrovia, California 91016, United States
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12
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Bērziņš K, Fraser-Miller SJ, Gordon KC. Recent advances in low-frequency Raman spectroscopy for pharmaceutical applications. Int J Pharm 2021; 592:120034. [DOI: 10.1016/j.ijpharm.2020.120034] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 10/26/2020] [Accepted: 10/27/2020] [Indexed: 10/23/2022]
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13
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Pelin JNBD, Edwards-Gayle CJC, Martinho H, Gerbelli BB, Castelletto V, Hamley IW, Alves WA. Self-assembled gold nanoparticles and amphiphile peptides: a colorimetric probe for copper(ii) ion detection. Dalton Trans 2020; 49:16226-16237. [DOI: 10.1039/d0dt00844c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We show that arginine/phenylalanine based peptides can be used to control the aggregation of gold nanoparticles in different ways. The arrangement provides a colorimetric approach to detect Cu2+ ions in water.
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Affiliation(s)
- Juliane N. B. D. Pelin
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
- Department of Chemistry
| | | | - Herculano Martinho
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | - Barbara B. Gerbelli
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
| | | | - Ian W. Hamley
- Department of Chemistry
- University of Reading
- Reading RG6 6AD
- UK
| | - Wendel A. Alves
- Centro de Ciências Naturais e Humanas
- Universidade Federal do ABC
- Santo André
- Brazil
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14
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Inoue M, Osada T, Hisada H, Koide T, Fukami T, Roy A, Carriere J, Heyler R. Solid-State Quantification of Cocrystals in Pharmaceutical Tablets Using Transmission Low-Frequency Raman Spectroscopy. Anal Chem 2019; 91:13427-13432. [PMID: 31565923 DOI: 10.1021/acs.analchem.9b01895] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
To enable the continuous production of cocrystal-containing pharmaceutical tablets, guaranteeing the cocrystal content of the final pharmaceutical tablets in the solid state is critical. This study demonstrates the quantification of caffeine-glutaric acid cocrystals in model tablets using transmission low-frequency Raman spectroscopy. Although distinguishing between cocrystals and raw materials using conventional Raman spectroscopy is difficult, the use of low-frequency Raman spectroscopy enables the discrimination of cocrystals and raw materials. Low-frequency Raman spectra were analyzed by the partial least-squares method (PLS) to obtain the predicted contents in the model tablets. To evaluate the quantitative ability of this method, the root means square error of cross-validation (RMSECV) was determined by comparing the actual concentration and predicted content with a calibration curve. For cocrystal-containing tablets, the quantitative ability of the transmission mode (RMSECV = 2.06- 3.17) was 13.4-31.4% higher than that of the backscattering mode (RMSECV= 2.37- 3.91). The coexistence of raw crystalline materials did not affect the quantitative ability for cocrystals.
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Affiliation(s)
- Motoki Inoue
- Department of Molecular Pharmaceutics , Meiji Pharmaceutical University , 2-522-1, Noshio , Kiyose, Tokyo 204-8588 , Japan
| | - Takumi Osada
- Department of Molecular Pharmaceutics , Meiji Pharmaceutical University , 2-522-1, Noshio , Kiyose, Tokyo 204-8588 , Japan
| | - Hiroshi Hisada
- Department of Molecular Pharmaceutics , Meiji Pharmaceutical University , 2-522-1, Noshio , Kiyose, Tokyo 204-8588 , Japan
| | - Tatsuo Koide
- Division of Drugs , National Institute of Health Sciences , 3-25-26, Tonomachi , Kawasaki-ku, Kawasaki , Kanagawa 210-9501 , Japan
| | - Toshiro Fukami
- Department of Molecular Pharmaceutics , Meiji Pharmaceutical University , 2-522-1, Noshio , Kiyose, Tokyo 204-8588 , Japan
| | - Anjan Roy
- Coherent Inc. , 850 East, Duarte Road , Monrovia , California 91016 , United States
| | - James Carriere
- Coherent Inc. , 850 East, Duarte Road , Monrovia , California 91016 , United States
| | - Randy Heyler
- Coherent Inc. , 850 East, Duarte Road , Monrovia , California 91016 , United States
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15
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Be̅rziņš K, Fraser-Miller SJ, Rades T, Gordon KC. Low-Frequency Raman Spectroscopic Study on Compression-Induced Destabilization in Melt-Quenched Amorphous Celecoxib. Mol Pharm 2019; 16:3678-3686. [DOI: 10.1021/acs.molpharmaceut.9b00557] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ka̅rlis Be̅rziņš
- The Dodd-Walls Centre for Photonic and Quantum Technologies, Department of Chemistry, University of Otago, Dunedin 9016, New Zealand
| | - Sara J. Fraser-Miller
- The Dodd-Walls Centre for Photonic and Quantum Technologies, Department of Chemistry, University of Otago, Dunedin 9016, New Zealand
| | - Thomas Rades
- Department of Pharmacy, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen 1165, Denmark
- Faculty of Science and Engineering, Åbo Akademi University, Turku 20500, Finland
| | - Keith C. Gordon
- The Dodd-Walls Centre for Photonic and Quantum Technologies, Department of Chemistry, University of Otago, Dunedin 9016, New Zealand
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16
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Yamamoto S, Ohnishi E, Sato H, Hoshina H, Ishikawa D, Ozaki Y. Low-Frequency Vibrational Modes of Nylon 6 Studied by Using Infrared and Raman Spectroscopies and Density Functional Theory Calculations. J Phys Chem B 2019; 123:5368-5376. [DOI: 10.1021/acs.jpcb.9b04347] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shigeki Yamamoto
- Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Erika Ohnishi
- School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
| | - Harumi Sato
- Graduate School of Human Development and Environment, Kobe University, Higashinada-Ku, Kobe, Hyogo 657-8501, Japan
| | - Hiromichi Hoshina
- RIKEN Center for Advanced Photonics, Aramaki-Aoba,
Aoba-ku, Sendai, Miyagi 980-0845, Japan
| | - Daitaro Ishikawa
- Faculty of Food and Agricultural Sciences, Fukushima University, 1 Kanayagawa, Fukushima 960-1296, Japan
| | - Yukihiro Ozaki
- School of Science and Technology, Kwansei Gakuin University, Sanda, Hyogo 669-1337, Japan
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17
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Balakhnina IA, Brandt NN, Chikishev AY, Mankova AA, Shpachenko IG. Low-frequency vibrational spectroscopy of proteins with different secondary structures. JOURNAL OF BIOMEDICAL OPTICS 2017; 22:91509. [PMID: 28342298 DOI: 10.1117/1.jbo.22.9.091509] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2017] [Accepted: 03/14/2017] [Indexed: 06/06/2023]
Abstract
Fourier transform infrared (FTIR) and Raman spectra of proteins with significantly different structures are measured in a spectral interval of 50 to 500 ?? cm ? 1 and noticeable spectral differences are revealed. Intensities of several spectral bands correlate with contents of secondary structure elements. FTIR spectra of superhelical proteins exhibit developed spectral features that are absent in the spectra of globular proteins. Significant differences of the Raman spectra of proteins that are not directly related to the difference of the secondary structures can be due to differences of tertiary and/or quaternary structure of protein molecules.
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Affiliation(s)
- Irina A Balakhnina
- Lomonosov Moscow State University, Physics Department, Leninskie gory, Moscow, Russia
| | - Nikolay N Brandt
- Lomonosov Moscow State University, Physics Department, Leninskie gory, Moscow, Russia
| | - Andrey Yu Chikishev
- Lomonosov Moscow State University, International Laser Center, Leninskie gory, Moscow, Russia
| | - Anna A Mankova
- Lomonosov Moscow State University, Physics Department, Leninskie gory, Moscow, Russia
| | - Irina G Shpachenko
- Lomonosov Moscow State University, Physics Department, Leninskie gory, Moscow, Russia
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18
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19
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Yamamoto S, Miyada M, Sato H, Hoshina H, Ozaki Y. Low-Frequency Vibrational Modes of Poly(glycolic acid) and Thermal Expansion of Crystal Lattice Assigned On the Basis of DFT-Spectral Simulation Aided with a Fragment Method. J Phys Chem B 2017; 121:1128-1138. [DOI: 10.1021/acs.jpcb.6b11304] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shigeki Yamamoto
- Department
of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan
| | - Mai Miyada
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Gakuen 2-1, Sanda, Hyogo 669-1337, Japan
| | - Harumi Sato
- Graduate
School of Human Development and Environment, Kobe University, Tsurukabuto,
Nada-ku, Kobe, Hyogo 657-8501, Japan
| | - Hiromichi Hoshina
- RIKEN, 519-1399 Aramaki-Aoba, Aoba-ku, Sendai, Miyagi 980-0845, Japan
| | - Yukihiro Ozaki
- Department
of Chemistry, School of Science and Technology, Kwansei Gakuin University, Gakuen 2-1, Sanda, Hyogo 669-1337, Japan
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20
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Xue X, Janisch C, Chen Y, Liu Z, Chen J. Low-frequency shift Raman spectroscopy using atomic filters. OPTICS LETTERS 2016; 41:5397-5400. [PMID: 27842141 DOI: 10.1364/ol.41.005397] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
A Faraday anomalous dispersion optical filter (FADOF) and an atomic resonant absorption filter are used in tandem to demonstrate a low-frequency shift Raman measurement down to few cm-1. The FADOF, with an ultralow bandwidth of 0.08 cm-1 at 780 nm, serves as a bandpass filter, while the rubidium atomic cell acts as a notch filter which has a bandwidth of 0.3 cm-1. A proof-of-concept study to measure a Raman signal generated from a silica optical fiber is performed, demonstrating a low-frequency measurement of both the Stokes and the anti-Stokes shift down to 3 cm-1 at an equivalent signal level. These results indicate the prospect for gigahertz-terahertz low-energy Raman spectroscopy based on atomic filters.
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21
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Photoinduced formation of thiols in human hair. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2016; 164:43-48. [DOI: 10.1016/j.jphotobiol.2016.09.021] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/07/2016] [Accepted: 09/12/2016] [Indexed: 01/31/2023]
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22
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Amin S, Blake S, Kennel RC, Lewis EN. Revealing New Structural Insights from Surfactant Micelles through DLS, Microrheology and Raman Spectroscopy. MATERIALS 2015. [PMCID: PMC5455709 DOI: 10.3390/ma8063754] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The correlation between molecular changes and microstructural evolution of rheological properties has been demonstrated for the first time in a mixed anionic/zwitterionic surfactant-based wormlike micellar system. Utilizing a novel combination of DLS-microrheology and Raman Spectroscopy, the effect of electrostatic screening on these properties of anionic (SLES) and zwitterionic (CapB) surfactant mixtures was studied by modulating the NaCl concentration. As Raman Spectroscopy delivers information about the molecular structure and DLS-microrheology characterizes viscoelastic properties, the combination of data delivered allows for a deeper understanding of the molecular changes underlying the viscoelastic ones. The high frequency viscoelastic response obtained through DLS-microrheology has shown the persistence of the Maxwell fluid response for low viscosity solutions at high NaCl concentrations. The intensity of the Raman band at 170 cm−1 exhibits very strong correlation with the viscosity variation. As this Raman band is assigned to hydrogen bonding, its variation with NaCl concentration additionally indicates differences in water structuring due to potential microstructural differences at low and high NaCl concentrations. The microstructural differences at low and high NaCl concentrations are further corroborated by persistence of a slow mode at the higher NaCl concentrations as seen through DLS measurements. The study illustrates the utility of the combined DLS, DLS-optical microrheology and Raman Spectroscopy in providing new molecular structural insights into the self-assembly process in complex fluids.
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Affiliation(s)
- Samiul Amin
- Malvern Instruments, 7221 Lee Deforest Drive, Suite 300, Columbia, MD 21046, USA; E-Mails: (S.B.); (E.N.L.)
- Author to whom correspondence should be addressed; E-Mail: ; Tel.: +1-443-878-1325
| | - Steven Blake
- Malvern Instruments, 7221 Lee Deforest Drive, Suite 300, Columbia, MD 21046, USA; E-Mails: (S.B.); (E.N.L.)
| | - Rachel C. Kennel
- Chemical and Biomolecular Engineering, University of Delaware, 150 Academy St., Newark, DE 19716, USA; E-Mail:
| | - E. Neil Lewis
- Malvern Instruments, 7221 Lee Deforest Drive, Suite 300, Columbia, MD 21046, USA; E-Mails: (S.B.); (E.N.L.)
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23
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Parrott EPJ, Zeitler JA. Terahertz time-domain and low-frequency Raman spectroscopy of organic materials. APPLIED SPECTROSCOPY 2015; 69:1-25. [PMID: 25506684 DOI: 10.1366/14-07707] [Citation(s) in RCA: 76] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
With the ongoing proliferation of terahertz time-domain instrumentation from semiconductor physics into applied spectroscopy over the past decade, measurements at terahertz frequencies (1 THz ≡ 10(12) Hz ≡ 33 cm(-1)) have attracted a sustained growing interest, in particular the investigation of hydrogen-bonding interactions in organic materials. More recently, the availability of Raman spectrometers that are readily able to measure in the equivalent spectral region very close to the elastic scattering background has also grown significantly. This development has led to renewed efforts in performing spectroscopy at the interface between dielectric relaxation phenomena and vibrational spectroscopy. In this review, we briefly outline the underlying technology, the physical phenomena governing the light-matter interaction at terahertz frequencies, recent examples of spectroscopic studies, and the current state of the art in assigning spectral features to vibrational modes based on computational techniques.
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Affiliation(s)
- Edward P J Parrott
- Chinese University of Hong Kong, Department of Electronic Engineering, Shatin, New Territories, Hong Kong Sar, China
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24
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Li Z, Hao A, Li X. β-Cyclodextrin supramolecular organogels induced by different carboxylic acids that exhibit diverse morphologies. J Mol Liq 2014. [DOI: 10.1016/j.molliq.2014.03.025] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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25
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Dožić S, Vraneš M, Zec N, Gadžurić S. Transport properties of ammonium nitrate in N-methylformamide and N,N-dimethylformamide. J Mol Liq 2014. [DOI: 10.1016/j.molliq.2014.02.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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26
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Yamamoto S, Morisawa Y, Sato H, Hoshina H, Ozaki Y. Quantum Mechanical Interpretation of Intermolecular Vibrational Modes of Crystalline Poly-(R)-3-Hydroxybutyrate Observed in Low-Frequency Raman and Terahertz Spectra. J Phys Chem B 2013; 117:2180-7. [DOI: 10.1021/jp309704k] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shigeki Yamamoto
- Department of Chemistry, School
of Science and Technology, and Research Center for Environment Friendly
Polymers, Kwansei Gakuin University, Gakuen
2-1, Sanda, Hyogo 669-1337, Japan
| | - Yusuke Morisawa
- Department of Chemistry, School
of Science and Engineering, Kinki University, 3-4-1 Kowakae, Higashiosaka City, Osaka 577-8502, Japan
| | - Harumi Sato
- Department of Chemistry, School
of Science and Technology, and Research Center for Environment Friendly
Polymers, Kwansei Gakuin University, Gakuen
2-1, Sanda, Hyogo 669-1337, Japan
| | - Hiromichi Hoshina
- RIKEN, 519-1399
Aramaki-Aoba, Aoba-ku, Sendai, Miyagi 980-0845, Japan
| | - Yukihiro Ozaki
- Department of Chemistry, School
of Science and Technology, and Research Center for Environment Friendly
Polymers, Kwansei Gakuin University, Gakuen
2-1, Sanda, Hyogo 669-1337, Japan
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27
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Paciaroni A, Orecchini A, Haertlein M, Moulin M, Conti Nibali V, De Francesco A, Petrillo C, Sacchetti F. Vibrational Collective Dynamics of Dry Proteins in the Terahertz Region. J Phys Chem B 2012; 116:3861-5. [DOI: 10.1021/jp211190q] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Alessandro Paciaroni
- Dipartimento di Fisica, Università degli Studi di Perugia, Via Pascoli, I-06123 Perugia, Italy
- Istituto Officina dei Materiali, Unità di Perugia, c/o Dipartimento di Fisica, Università di Perugia, I-06123 Perugia, Italy
| | - Andrea Orecchini
- Dipartimento di Fisica, Università degli Studi di Perugia, Via Pascoli, I-06123 Perugia, Italy
- Istituto Officina dei Materiali, Unità di Perugia, c/o Dipartimento di Fisica, Università di Perugia, I-06123 Perugia, Italy
- Institut Laue Langevin, 6 rue J. Horowitz, F-38042 Grenoble, France
| | | | - Martine Moulin
- Institut Laue Langevin, 6 rue J. Horowitz, F-38042 Grenoble, France
| | - Valeria Conti Nibali
- Dipartimento di Fisica, Università degli Studi di Messina, via Salita Sperone, I-98166 Messina, Italy
| | - Alessio De Francesco
- CNR, Istituto Officina dei Materiali, Unità di Grenoble, Institut Laue Langevin, 6 rue J. Horowitz, F-38042 Grenoble, France
| | - Caterina Petrillo
- Dipartimento di Fisica, Università degli Studi di Perugia, Via Pascoli, I-06123 Perugia, Italy
- Istituto Officina dei Materiali, Unità di Perugia, c/o Dipartimento di Fisica, Università di Perugia, I-06123 Perugia, Italy
| | - Francesco Sacchetti
- Dipartimento di Fisica, Università degli Studi di Perugia, Via Pascoli, I-06123 Perugia, Italy
- Istituto Officina dei Materiali, Unità di Perugia, c/o Dipartimento di Fisica, Università di Perugia, I-06123 Perugia, Italy
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28
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Nikitin SP, Manka C, Grun J, Bowles J. A technique for contactless measurement of water temperature using Stokes and anti-Stokes comparative Raman spectroscopy. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2012; 83:033105. [PMID: 22462904 DOI: 10.1063/1.3685613] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
Contactless measurements of water temperature are utilized in a number of sciences, such as oceanography, climatology, and biology. Previously reported Raman spectroscopy techniques exploited the changes in the shapes of water Raman bands. Interpretation of these changes is difficult since these bands are composed of multiple lines, each influenced not only by temperature but also by pressure and salinity. This paper presents a proof-of-principal demonstration of a contactless technique which determines water temperature from the ratio of Stokes and anti-Stokes intensities of the water 180 cm(-1) Raman band. This ratio is not sensitive to pressure and salinity, allowing reliable determination of water temperature.
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Affiliation(s)
- S P Nikitin
- Research Support Instruments Inc., 4325-B Forbes Blvd., Lanham, Maryland 20706, USA.
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29
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Yamamoto S, Watarai H. Raman optical activity study on insulin amyloid- and prefibril intermediate. Chirality 2011; 24:97-103. [DOI: 10.1002/chir.21029] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2011] [Accepted: 08/11/2011] [Indexed: 11/06/2022]
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30
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Mazur K, Heisler IA, Meech SR. Water Dynamics at Protein Interfaces: Ultrafast Optical Kerr Effect Study. J Phys Chem A 2011; 116:2678-85. [DOI: 10.1021/jp2074539] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Kamila Mazur
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Ismael A. Heisler
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Stephen R. Meech
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
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31
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Mazur K, Heisler IA, Meech SR. THz Spectra and Dynamics of Aqueous Solutions Studied by the Ultrafast Optical Kerr Effect. J Phys Chem B 2011; 115:2563-73. [DOI: 10.1021/jp111764p] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Kamila Mazur
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Ismael A. Heisler
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
| | - Stephen R. Meech
- School of Chemistry, University of East Anglia, Norwich NR4 7TJ, U.K
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32
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Mazur K, Heisler IA, Meech SR. Ultrafast Dynamics and Hydrogen-Bond Structure in Aqueous Solutions of Model Peptides. J Phys Chem B 2010; 114:10684-91. [DOI: 10.1021/jp106423a] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Kamila Mazur
- School of Chemistry, University of East Anglia Norwich NR4 7TJ, United Kingdom
| | - Ismael A. Heisler
- School of Chemistry, University of East Anglia Norwich NR4 7TJ, United Kingdom
| | - Stephen R. Meech
- School of Chemistry, University of East Anglia Norwich NR4 7TJ, United Kingdom
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33
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Lerbret A, Affouard F, Bordat P, Hédoux A, Guinet Y, Descamps M. Low-frequency vibrational properties of lysozyme in sugar aqueous solutions: A Raman scattering and molecular dynamics simulation study. J Chem Phys 2009; 131:245103. [DOI: 10.1063/1.3273218] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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34
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Hédoux A, Willart JF, Paccou L, Guinet Y, Affouard F, Lerbret A, Descamps M. Thermostabilization mechanism of bovine serum albumin by trehalose. J Phys Chem B 2009; 113:6119-26. [PMID: 19385694 DOI: 10.1021/jp900330r] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Thermal denaturation of bovine serum albumin (BSA) is analyzed from differential scanning calorimetry (DSC) and Raman spectroscopy investigations. DSC curves exhibit a marked dependence on protein concentration. BSA thermal denaturation becomes broader and bimodal, and the temperature of denaturation increases with increasing protein concentration. Raman scattering investigations simultaneously carried out in the low-frequency range (10-350 cm(-1)) and in the amide I band region (1500-1800 cm(-1)) indicate that the denaturation process is described as a biphasic process independent of protein concentration. The dependence of the protein stability upon the protein concentration can be interpreted from the coupling of protein and solvent dynamics. The confrontation of previous results obtained from Raman investigations on lysozyme (LYS) and the present study of BSA brings out significant information on protein dynamics and the coupling of protein and hydration-water dynamics in relation with the solvent accessible surface area. Contrary to LYS, the modification of the dynamics of hydration water by the protein is clearly observed on BSA. The influence of trehalose on the protein dynamics was analyzed. We found that trehalose reduces the dynamic fluctuations of polar side chains at the protein-solvent interface. The mechanism of thermostabilization by trehalose is related to the reduction of the exposure of hydrophobic groups of BSA to the water molecules, and to a strengthening of intermolecular O-H interactions in the hydrogen-bond network of water, leading to the stabilization of the tertiary structure.
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Affiliation(s)
- Alain Hédoux
- Laboratoire de Dynamique et Structure des Materiaux Moleculaires, UMR CNRS 8024, UFR de Physique, Universite de Lille 1, Bat. P5, 59 655 Villeneuve d'Ascq Cedex, France
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35
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Lushnikov SG, Svanidze AV, Gvasaliya SN, Torok G, Rosta L, Sashin IL. Fractal properties of lysozyme: a neutron scattering study. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2009; 79:031913. [PMID: 19391977 DOI: 10.1103/physreve.79.031913] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2008] [Indexed: 05/27/2023]
Abstract
The spatial structure and dynamics of hen egg white lysozyme have been investigated by small-angle and inelastic neutron scattering. Analysis of the results was carried using the fractal approach, which allowed determination of the fractal and fracton dimensions of lysozyme, i.e., consideration of the protein structure and dynamics by using a unified approach. Small-angle neutron scattering studies of thermal denaturation of lysozyme have revealed changes in the fractal dimension in the vicinity of the thermal denaturation temperature that reflect changes in the spatial organization of protein.
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Affiliation(s)
- S G Lushnikov
- Ioffe Physical Technical Institute, RAS, 194021, St. Petersburg, Russia
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36
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Herrero AM. Raman spectroscopy for monitoring protein structure in muscle food systems. Crit Rev Food Sci Nutr 2008; 48:512-23. [PMID: 18568857 DOI: 10.1080/10408390701537385] [Citation(s) in RCA: 223] [Impact Index Per Article: 13.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
Raman spectroscopy offers structural information about complex solid systems such as muscle food proteins. This spectroscopic technique is a powerful and a non-invasive method for the study of protein changes in secondary structure, mainly quantified, analysing the amide I (1650-1680 cm(- 1)) and amide III (1200-1300 cm(- 1)) regions and C-C stretching band (940 cm(- 1)), as well as modifications in protein local environments (tryptophan residues, tyrosil doublet, aliphatic aminoacids bands) of muscle food systems. Raman spectroscopy has been used to determine structural changes in isolated myofibrillar and connective tissue proteins by the addition of different compounds and by the effect of the conservation process such as freezing and frozen storage. It has been also shown that Raman spectroscopy is particularly useful for monitoring in situ protein structural changes in muscle food during frozen storage. Besides, the possibilities of using protein structural changes of intact muscle to predict the protein functional properties and the sensory attributes of muscle foods have been also investigated. In addition, the application of Raman spectroscopy to study changes in the protein structure during the elaboration of muscle food products has been demonstrated.
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Affiliation(s)
- Ana M Herrero
- Departamento Nutrición, Bromatologia y Tecnologia de los Alimentos, Facultad de Veterinaria, Universidad Complutense, Madrid, Spain.
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Herrero AM. Raman spectroscopy a promising technique for quality assessment of meat and fish: A review. Food Chem 2008. [DOI: 10.1016/j.foodchem.2007.10.014] [Citation(s) in RCA: 265] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Fujii K, Kumai T, Takamuku T, Umebayashi Y, Ishiguro SI. Liquid Structure and Preferential Solvation of Metal Ions in Solvent Mixtures of N,N-Dimethylformamide and N-Methylformamide. J Phys Chem A 2006; 110:1798-804. [PMID: 16451010 DOI: 10.1021/jp054972a] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Raman spectra of aprotic N,N-dimethylformamide (DMF) and protic N-methylformamide (NMF) mixtures containing manganese(II), nickel(II), and zinc(II) perchlorate were obtained, and the individual solvation numbers around the metal ions were determined over the whole range of solvent compositions. Variation profiles of the individual solvation numbers with solvent composition showed no significant difference among the metal systems examined. In all of these metal systems, no preferential solvation occurs in mixtures with DMF mole fraction of x(DMF) < 0.5, whereas DMF preferentially solvates the metal ions at x(DMF) > 0.5. The liquid structure of the mixtures was also studied by means of small-angle neutron scattering (SANS) and low-frequency Raman spectroscopy. SANS experiments demonstrate that DMF molecules do not appreciably self-aggregate in the mixtures over the whole range of solvent composition. Low-frequency Raman spectroscopy suggests that DMF molecules are extensively hydrogen-bonded with NMF in NMF-rich mixtures, whereas NMF molecules extensively self-aggregate in DMF-rich mixtures, although the liquid structure in neat NMF is partly ruptured. The bulk solvent structure in the mixtures thus varies with solvent composition, which plays a decisive role in developing the varying profiles of the individual solvation numbers of metal ions in the solvent mixtures.
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Affiliation(s)
- Kenta Fujii
- Department of Chemistry, Faculty of Science, Kyushu University, Hakozaki, Fukuoka 812-8581, Japan
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Thermodynamic Aspects of Metal–Ion Complexation in the Structured Solvent, N-Methylformamide. J SOLUTION CHEM 2005. [DOI: 10.1007/s10953-005-5114-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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d'Ovidio F, Bohr HG, Lindgård PA. Analytical tools for solitons and periodic waves corresponding to phonons on Lennard-Jones lattices in helical proteins. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2005; 71:026606. [PMID: 15783440 DOI: 10.1103/physreve.71.026606] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2004] [Indexed: 05/24/2023]
Abstract
We study the propagation of solitons along the hydrogen bonds of an alpha helix. Modeling the hydrogen and peptide bonds with Lennard-Jones potentials, we show that the solitons can appear spontaneously and have long lifetimes. Remarkably, even if no explicit solution is known for the Lennard-Jones potential, the solitons can be characterized analytically with a good quantitative agreement using formulas for a Toda potential with parameters fitted to the Lennard-Jones potential. We also discuss and show the robustness of the family of periodic solutions called cnoidal waves, corresponding to phonons. The soliton phenomena described in the simulations of alpha helices may help to explain recent x-ray experiments on long alpha helices in Rhodopsin where a long lifetime of the vibrational modes has been observed.
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Affiliation(s)
- Francesco d'Ovidio
- Mediterranean Institute of Advanced Studies IMEDEA (CSIC-UIB), Campus Universitat Illes Balears, E-07122 Palma de Mallorca, Spain.
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Eaves JD, Fecko CJ, Stevens AL, Peng P, Tokmakoff A. Polarization-selective femtosecond Raman spectroscopy of low-frequency motions in hydrated protein films. Chem Phys Lett 2003. [DOI: 10.1016/s0009-2614(03)00890-x] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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42
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Vallée P, Lafait J, Ghomi M, Jouanne M, Morhange J. Raman scattering of water and photoluminescence of pollutants arising from solid–water interaction. J Mol Struct 2003. [DOI: 10.1016/s0022-2860(02)00653-1] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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43
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Collective vibrational effects in hydrogen bonded liquid amides and proteins studied by isotopic substitution. J Mol Struct 2000. [DOI: 10.1016/s0022-2860(00)00477-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Ujike T, Tominaga Y, Mizoguchi K. Dynamical structure of water in alkali halide aqueous solutions. J Chem Phys 1999. [DOI: 10.1063/1.477797] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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46
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Mizoguchi K, Ujike T, Tominaga Y. Dynamical structure of water in NaCl aqueous solution. J Chem Phys 1998. [DOI: 10.1063/1.476763] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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47
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Urabe H, Sugawara Y, Ataka M, Rupprecht A. Low-frequency Raman spectra of lysozyme crystals and oriented DNA films: dynamics of crystal water. Biophys J 1998; 74:1533-40. [PMID: 9512049 PMCID: PMC1299499 DOI: 10.1016/s0006-3495(98)77865-8] [Citation(s) in RCA: 77] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Abstract
We observed low-frequency Raman spectra of tetragonal lysozyme crystals and DNA films, with varying water content of the samples. The spectra are fitted well by sums of relaxation modes and damped harmonic oscillators in the region from approximately 1 cm(-1) to 250 cm(-1). The relaxation modes are due to crystal water, and the distribution of relaxation times is determined. In wet samples, the relaxation time of a small part of the water molecules is a little longer than that of bulk water. The relaxation time of a considerable part of the crystal water, which belongs mainly to the secondary hydration shell, is an order of magnitude longer than that of bulk water. Furthermore, the relaxation time of some water molecules in the primary hydration shell of semidry samples is shorter than we expected. Thus we have shown that low-frequency Raman measurements combined with properly oriented samples can give specific information on the dynamics of hydration water in the ps range. On the other hand, we concluded, based on polarized Raman spectra of lysozyme crystals, that the damped oscillators correspond to essentially intramolecular vibrational modes.
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Affiliation(s)
- H Urabe
- Tokyo Kasei Gakuin University, Aihara, Machida, Japan.
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48
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Faurskov Nielsen O. Chapter 3. Low-frequency spectroscopic studies and intermolecular vibrational energy transfer in liquids. ACTA ACUST UNITED AC 1997. [DOI: 10.1039/pc093057] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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50
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Tominaga Y, Takeuchi SM. Dynamical structure of water in dioxane aqueous solution by low‐frequency Raman scattering. J Chem Phys 1996. [DOI: 10.1063/1.471479] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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