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Rajarapu SP, Ullman DE, Uzest M, Rotenberg D, Ordaz NA, Whitfield AE. Plant–Virus–Vector Interactions. Virology 2021. [DOI: 10.1002/9781119818526.ch7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Bhardwaj VK, Purohit R. Structural changes induced by substitution of amino acid 129 in the coat protein of Cucumber mosaic virus. Genomics 2020; 112:3729-3738. [DOI: 10.1016/j.ygeno.2020.04.023] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Revised: 04/01/2020] [Accepted: 04/24/2020] [Indexed: 01/06/2023]
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3
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Gene copy number is differentially regulated in a multipartite virus. Nat Commun 2013; 4:2248. [DOI: 10.1038/ncomms3248] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2013] [Accepted: 07/05/2013] [Indexed: 12/14/2022] Open
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Yoon JY, Chung BN, Choi SK. High-temperature-mediated spontaneous mutations in the coat protein of cucumber mosaic virus in Nicotiana tabacum. Arch Virol 2011; 156:2173-80. [PMID: 21947505 DOI: 10.1007/s00705-011-1113-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2011] [Accepted: 09/12/2011] [Indexed: 11/24/2022]
Abstract
Since temperature effects on cucumber mosaic virus (CMV) have not been extensively studied, we examined the effects of a moderate increase in temperature on the virulence and the genetic diversity of CMV in Nicotiana tabacum (cv. Samsun NN). Two passage lines were initiated by inoculation of tobacco plants with a chlorosis strain of CMV (designated FFM-CMV) derived from full-length infectious CMV clones. Symptom changes in the tobacco plants were monitored during five successive passages at 25 and 33°C. At the fifth passage, tobacco plants inoculated with FFM-CMV at 33°C showed typical chlorosis symptoms at 7 days post-inoculation (dpi), and the plants further developed mosaic symptoms on the upper leaves at 20 dpi. In contrast, tobacco plants inoculated with FFM-CMV at 25°C did not show changes in symptoms on the upper leaves within 20 days. Sequence analysis of the coat protein (CP) genes of FFM-CMV revealed that a variety of spontaneous sequence changes were generated from the 14th and the 18th leaves of 33°C lineage tobacco plants, but not from those of 25°C lineage tobacco plants. The major CP mutation from the upper leaves of 33°C lineage tobacco plants was an L129P mutation, indicating a change in symptoms correlating to the population composition of the mutant viruses. Although relatively low mutation rates were observed from 33°C-lineage tobacco plants, some CP mutations may have been selected for systemic movement of CMV at the higher temperature, providing evidence for the importance of temperature in the process of genetic diversification of CMV populations.
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Affiliation(s)
- Ju-Yeon Yoon
- Department of Environmental and Life Sciences, Seoul Women's University, Republic of Korea.
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5
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Shi BJ, Symons RH, Palukaitis P. Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Res 2009; 140:216-21. [PMID: 19063925 DOI: 10.1016/j.virusres.2008.11.009] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2008] [Revised: 10/01/2008] [Accepted: 11/10/2008] [Indexed: 11/17/2022]
Abstract
We previously described interviral recombinant RNAs derived from a chimeric virus having RNAs 1 and 2 of cucumber mosaic virus (CMV) with RNA 3 from the related tomato aspermy virus (TAV) and the 2b gene from either TAV or another strain of CMV. Here, we show that these interviral recombinant RNAs 3 were stable in the infected plants and could co-exist with their wild-type parental viral RNAs in the same plants, but their de novo generations were inhibited in the presence of the wild-type parental viral RNAs. The recombinant viral genomes did not prevent the replication of other viral RNAs or vice versa, but one of the interviral recombinant viruses induced different symptoms in Physalis floridana from those induced by the parental chimeric virus without the interviral RNA 3 recombinant. Factors such as the nature of the 2b gene and/or the presence or absence of competing wild-type parental RNAs influenced the generation of the recombinant RNAs described. Our data provide additional mechanistic insight into generation, stabilization and competition of recombinant viral RNA in infected host plants.
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Affiliation(s)
- Bu-Jun Shi
- Australian Centre for Plant Functional Genomics, University of Adelaide, Glen Osmond, SA 5064, Australia
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Ratti C, Hleibieh K, Bianchi L, Schirmer A, Autonell CR, Gilmer D. Beet soil-borne mosaic virus RNA-3 is replicated and encapsidated in the presence of BNYVV RNA-1 and -2 and allows long distance movement in Beta macrocarpa. Virology 2009; 385:392-9. [PMID: 19141358 DOI: 10.1016/j.virol.2008.12.013] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2008] [Revised: 11/18/2008] [Accepted: 12/06/2008] [Indexed: 11/19/2022]
Abstract
Beet soil-borne mosaic virus (BSBMV) and Beet necrotic yellow vein virus (BNYVV) belong to the Benyvirus genus. BSBMV has been reported only in the United States, while BNYVV has a worldwide distribution. Both viruses are vectored by Polymyxa betae and possess similar host ranges, particle number and morphology. BNYVV and BSBMV are not serologically related but they have similar genomic organizations. Field isolates usually consist of four RNA species but some BNYVV isolates contain a fifth RNA. RNAs 1 and 2 are essential for infection and replication while RNAs 3 and 4 play important roles in plant and vector interactions, respectively. Nucleotide and amino acid analyses revealed that BSBMV and BNYVV are sufficiently different to be classified as two species. Complementary base changes found within the BSBMV RNA-3 5' UTR made it resemble to BNYVV 5' RNA-3 structure whereas the 3' UTRs of both species were more conserved. cDNA clones were obtained, and allowed complete copies of BSBMV RNA-3 to be trans-replicated, trans-encapsidated by the BNYVV viral machinery. Long-distance movement was observed indicating that BSBMV RNA-3 could substitute BNYVV RNA-3 for systemic spread, even though the p29 encoded by BSBMV RNA-3 is much closer to the RNA-5-encoded p26 than to BNYVV RNA-3-encoded p25. Competition occurred when BSBMV RNA-3-derived replicons were used together with BNYVV-derived RNA-3 but not when the RNA-5-derived component was used. Exploitation of the similarities and divergences between BSBMV and BNYVV should lead to a better understanding of molecular interactions between Benyviruses and their hosts.
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Affiliation(s)
- Claudio Ratti
- DISTA-Plant pathology, University of Bologna, Viale G. Fanin, 40-40127 Bologna, Italy
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Kurath G, Palukaitis P. Biological activity of T7 transcripts of a prototype clone and a sequence variant clone of a satellite RNA of cucumber mosaic virus. Virology 2008; 159:199-208. [PMID: 18644568 DOI: 10.1016/0042-6822(87)90456-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/1986] [Accepted: 03/26/1987] [Indexed: 12/23/2022]
Abstract
Molecular cloning of the (D)CARNA 5 (previously known as n-CARNA 5) necrosis-inducing satellite RNA of cucumber mosaic virus produced a prototype clone (pDsat4) and a sequence variant clone (pDsat1). pDsat1 contained 10 nucleotide changes between positions 70 and 160 which rendered that region identical to the corresponding region of a satellite RNA which does not induce necrosis. T7 RNA polymerase transcripts of each clone replicated in both tobacco and tomato, and the progeny satellite RNAs did not retain the 57-nucleotide non-satellite sequence at the 5' ends of the T7 transcripts. RNase T1 fingerprint analysis of both T7 transcripts and progeny satellite RNAs proved that the satellite sequence portion of each transcript was faithfully replicated in tobacco, and the variations in pDsat1 relative to pDsat4 were maintained. Replication of transcripts of either pDsat4 or pDsat1 in tomato resulted in lethal necrosis, suggesting that the determinant of necrosis induction lies outside the region between nucleotides 70 and 160.
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Affiliation(s)
- G Kurath
- Department of Plant Pathology, Cornell University, Ithaca, New York 14853, USA
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8
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Wilson PA, Symons RH. The RNAs of cucumoviruses: 3'-terminal sequence analysis of two strains of tomato aspermy virus. Virology 2008; 112:342-5. [PMID: 18635070 DOI: 10.1016/0042-6822(81)90639-5] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/05/1981] [Indexed: 11/29/2022]
Abstract
The sequences of 189 residues from the 3' terminus of three RNAs of one strain and two RNAs of another strain of tomato aspermy virus have been determined; there was almost complete sequence homology between the RNAs. A base-paired transfer RNA-like structure is proposed for tomato aspermy virus RNAs which is similar in many aspects to the structure proposed for the 3'-terminal 172 residues of RNA 4 of the Q-strain of cucumber mosaic virus (R. H. Symons, Nucleic Acids Res.7, 825-837, 1979). These 172 residues of cucumber mosaic virus RNA 4 can be aligned to show 73% sequence homology with the 3'-terminal 189 residues of the tomato aspermy virus RNAs.
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Affiliation(s)
- P A Wilson
- Department of Biochemistry, University of Adelaide, Adelaide, South Australia 5001, Australia
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9
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Abstract
Like the satellite RNA (Sat-RNA) of cucumber mosaic virus (CMV), the RNA of satellite tobacco necrosis virus (STNV-RNA) was shown to be capable of surviving in vivo without replication for at least 10 days in the absence of its helper tobacco necrosis virus (TNV). However, under similar conditions, the genomic RNA 3 of CMV failed to survive for 48 hr. It has been demonstrated that both STNV-RNA and Sat-RNA are significantly more resistant to inactivation in vitro than the RNAs of their helper viruses. The thermal denaturation kinetics of STNV-RNA and Sat-RNA, unlike those of TNV-RNA and CMV-RNA, are more like those of transfer RNA (tRNA) indicating that a high proportion of their nucleotides are involved in base pairing. STNV-RNA, Sat-RNA, and tRNA also show similar degrees of resistance to degradation by the single strand-specific S(1) nuclease. It is suggested that both STNV-RNA and Sat-RNA may owe their in vitro stability to features of their molecular structure which may also account for their ability to survive in vivo for prolonged periods without replication. Similarities and differences between satellites and viroids are discussed and it is concluded that these two classes of RNAs are unlikely to be related. The possible evolutionary origins of the satellites are also considered.
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Ng JCK, Falk BW. Virus-vector interactions mediating nonpersistent and semipersistent transmission of plant viruses. ANNUAL REVIEW OF PHYTOPATHOLOGY 2006; 44:183-212. [PMID: 16602948 DOI: 10.1146/annurev.phyto.44.070505.143325] [Citation(s) in RCA: 242] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Most plant viruses are absolutely dependent on a vector for plant-to-plant spread. Although a number of different types of organisms are vectors for different plant viruses, phloem-feeding Hemipterans are the most common and transmit the great majority of plant viruses. The complex and specific interactions between Hemipteran vectors and the viruses they transmit have been studied intensely, and two general strategies, the capsid and helper strategies, are recognized. Both strategies are found for plant viruses that are transmitted by aphids in a nonpersistent manner. Evidence suggests that these strategies are found also for viruses transmitted in a semipersistent manner. Recent applications of molecular and cell biology techniques have helped to elucidate the mechanisms underlying the vector transmission of several plant viruses. This review examines the fundamental contributions and recent developments in this area.
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Affiliation(s)
- James C K Ng
- Department of Plant Pathology, University of California, Riverside, California 92521, USA.
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Ng JCK, Josefsson C, Clark AJ, Franz AWE, Perry KL. Virion stability and aphid vector transmissibility of Cucumber mosaic virus mutants. Virology 2005; 332:397-405. [PMID: 15661170 DOI: 10.1016/j.virol.2004.11.021] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2004] [Revised: 10/26/2004] [Accepted: 11/17/2004] [Indexed: 10/26/2022]
Abstract
The physical stability of virions of Cucumber mosaic virus (CMV) mutants was investigated to determine if relative stability correlated with efficiency of aphid transmission. Virion stability was evaluated by a urea disruption assay and by testing the infectivity of virus following purifications. All viruses were infectious when purified using a low salt buffer without organic solvent, whereas two of seven viruses were less stable and inactivated following purification with a high salt buffer and chloroform. These two viruses were both reassortants derived from the spontaneous transmission-defective mutant CMV-M (F1F2M3 and F1F2M3-L129P). F1F2M3 was relatively unstable, being disrupted between 0 and 1 M urea versus the wild-type CMV-Fny (F1F2M3) that was destabilized at 3-4 M urea. Modifications of F1F2M3 at three amino acid positions (129, 162, 168), singly or in combination, increased the relative stability of virions. A second class of transmission-defective CMVs with engineered mutations in the betaH-betaI surface loop of the CMV-Fny capsid protein (CP) exhibited near wild-type levels of stability. Lastly, a single Pro to Leu substitution at CP position 129 of CMV-Fny (F1F2M3-P129L) conferred the induction of necrosis in tobacco plants and reduced aphid transmissibility, but did not markedly alter the physical stability of virions. Thus, only among CMV-M derivatives harboring the CP mutation of Thr to Ala at position 162 were increases in stability correlated with restoration of transmissibility by the aphid Aphis gossypii.
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Affiliation(s)
- James C K Ng
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 47907, USA
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Shi BJ, Palukaitis P, Symons RH. Stable and unstable mutations in the 5' non-translated regions of tomato aspermy virus RNAs 1 and 2 generated de novo from infectious cDNA clones containing a cauliflower mosaic virus 35S promoter. Virus Genes 2004; 28:277-83. [PMID: 15266109 DOI: 10.1023/b:viru.0000025775.20862.50] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Tomato aspermy virus RNAs derived from infectious cDNA clones exhibited a number of sequence alterations in the 5' non-translated region (NTR). These included a deletion of the first four residues in both RNAs 1 and 2, transversion of residue 5 from a G to a U in RNA 1, and transversion of A to C at position of 50 of RNA 1. These alterations were not stable in the infected plants while the insertion of a U residue between nucleotides 1 and 5 of RNA 1 was stable in the infected plants. Generation of these sequence alternations was not dependent upon either the host species or the concentration of the inoculum. The sequence alterations also did not occur on passage of wildtype virus. Rather, the sequence alterations related to transcription from the cauliflower mosaic virus 35S RNA promoter-driving infectious cDNAs. The alternations observed had no impact on symptoms or infectivity, but did affect the accumulation of specific viral RNAs. The data also demonstrated the existence of some plasticity in the sequence of the 5' NTR.
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Affiliation(s)
- Bu-Jun Shi
- Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
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Abstract
Research on the molecular biology of cucumoviruses and their plant-virus interactions has been very extensive in the last decade. Cucumovirus genome structures have been analyzed, giving new insights into their genetic variability, evolution, and taxonomy. A new viral gene has been discovered, and its role in promoting virus infection has been delineated. The localization and various functions of each viral-encoded gene product have been established. The particle structures of Cucumber mosaic virus (CMV) and Tomato aspermy virus have been determined. Pathogenicity domains have been mapped, and barriers to virus infection have been localized. The movement pathways of the viruses in some hosts have been discerned, and viral mutants affecting the movement processes have been identified. Host responses to viral infection have been characterized, both temporally and spatially. Progress has been made in determining the mechanisms of replication, gene expression, and transmission of CMV. The pathogenicity determinants of various satellite RNAs have been characterized, and the importance of secondary structure in satellite RNA-mediated interactions has been recognized. Novel plant genes specifying resistance to infection by CMV have been identified. In some cases, these genes have been mapped, and one resistance gene to CMV has been isolated and characterized. Pathogen-derived resistance has been demonstrated against CMV using various segments of the CMV genome, and the mechanisms of some of these forms of resistances have been analyzed. Finally, the nature of synergistic interactions between CMV and other viruses has been characterized. This review highlights these various achievements in the context of the previous work on the biology of cucumoviruses and their interactions with plants.
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Affiliation(s)
- Peter Palukaitis
- Gene Expression Programme, Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, United Kingdom
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Kim SH, Kalinina NO, Andreev I, Ryabov EV, Fitzgerald AG, Taliansky ME, Palukaitis P. The C-terminal 33 amino acids of the cucumber mosaic virus 3a protein affect virus movement, RNA binding and inhibition of infection and translation. J Gen Virol 2004; 85:221-230. [PMID: 14718637 DOI: 10.1099/vir.0.19583-0] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The capsid protein (CP) of Cucumber mosaic virus (CMV) is required for cell-to-cell movement, mediated by the 3a movement protein (MP). Deletion of the C-terminal 33 amino acids of the CMV 3a MP (in the mutant designated 3aDeltaC33 MP) resulted in CP-independent cell-to-cell movement, but not long-distance movement. RNA-binding studies done in vitro using isolated bacterially expressed MP showed that the 3aDeltaC33 MP bound RNA more strongly, with fewer regions sensitive to RNase and formed cooperatively bound complexes at lower ratios of protein : RNA than the wild-type (wt) 3a MP. Analysis of the architecture of the complexes by atomic force microscopy showed that the wt 3a MP formed a single type of complex with RNA, resembling beads on a string. By contrast, the 3aDeltaC33 MP formed several types of complexes, including complexes with virtually no MP bound or thicker layers of MP bound to the RNA. Assays showed that protein-RNA complexes containing high levels of either MP inhibited the infectivity and in vitro translatability of viral RNAs. The 3aDeltaC33 MP inhibited these processes at lower ratios of protein : RNA than the wt 3a MP, consistent with its stronger binding properties. The apparent contradiction between these inhibition data and the CP-independent cell-to-cell movement of CMV expressing the 3aDeltaC33 MP is discussed.
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Affiliation(s)
- Sang Hyon Kim
- Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Natalia O Kalinina
- A.N. Belozersky Institute of Physico-chemical Biology, Moscow State University, Moscow 119899, Russia
- Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK
| | - Igor Andreev
- Dept of Electronic Engineering and Physics, University of Dundee, Dundee DD1 4NH, UK
| | - Eugene V Ryabov
- Horticulture Research International-East Malling, ME19 6BJ, UK
| | | | | | - Peter Palukaitis
- Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK
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Shi BJ, Miller J, Symons RH, Palukaitis P. The 2b protein of cucumoviruses has a role in promoting the cell-to-cell movement of pseudorecombinant viruses. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2003; 16:261-267. [PMID: 12650457 DOI: 10.1094/mpmi.2003.16.3.261] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Pseudorecombinant viruses (i.e., those containing a reassorted genome of closely related multipartite viruses) are often not as competitive as the parental viruses. The role of the 2b gene in hypervirulence and maintenance of a progressive infection was assessed in a pseudorecombinant virus formed between RNAs 1 plus 2 of Cucumber mosaic virus (CMV) and RNA 3 of Tomato aspermy virus (TAV). The presence of RNA 3 of TAV was found to affect the level of RNA accumulation but not the level of virulence. By contrast, the 2b genes of both TAV and a hypervirulent strain of CMV (WAII-CMV) were found to affect the virulence of the pseudorecombinant viruses but not the levels of viral RNA accumulation. The 2b gene rather than the overlapping open reading frame encoding the C-terminal 41 amino acids of 2a protein of the corresponding virus was found to be essential for promoting infection of the pseudorecombinant viruses in planta. However, the 2b gene was not essential for replication of pseudorecombinant viruses containing CMV RNAs 1 plus 2 and TAV RNA 3. These results indicate that the 2b protein is involved in promoting the cell-to-cell movement of the pseudorecombinant viruses. These data also suggest the existence of specific interaction between the TAV 2b protein and either RNA 3 or its encoded proteins, which may be critical for promoting or maintaining infection or both.
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Affiliation(s)
- Bu-Jun Shi
- Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA 5064, Australia
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Shi BJ, Palukaitis P, Symons RH. Differential virulence by strains of Cucumber mosaic virus is mediated by the 2b gene. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2002; 15:947-55. [PMID: 12236601 DOI: 10.1094/mpmi.2002.15.9.947] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
The approximately 12-kDa 2b protein, encoded by all cucumoviruses, had been shown to play an important role in viral long-distance movement, hypervirulence, and suppression of post-transcriptional gene silencing. The role of the 2b gene in the hypervirulence of Cucumber mosaic virus (CMV) and whether hypervirulence was linked to movement were analyzed using a hybrid virus (CMV-qw), generated by replacing the 2b gene in a subgroup II strain, Q-CMV, with the 2b gene from a subgroup IA strain, WAII-CMV. CMV-qw was more virulent than Q-CMV or WAII-CMV on most of the host plant species tested. Northern blot and nucleotide sequence analyses demonstrated that CMV-qw was stably maintained during the course of infection and upon passage. Kinetic studies revealed that the hypervirulence induced by the hybrid virus was associated with neither increased viral RNA accumulation nor more rapid viral movement per se, suggesting that other functions of the 2b protein are important in determining the hypervirulence.
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Affiliation(s)
- Bu-Jun Shi
- Department of Plant Science, Waite Institute, Adelaide University, Glen Osmond, SA, Australia
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Ng JC, Liu S, Perry KL. Cucumber mosaic virus mutants with altered physical properties and defective in aphid vector transmission. Virology 2000; 276:395-403. [PMID: 11040130 DOI: 10.1006/viro.2000.0569] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Two mutant strains of cucumber mosaic virus (CMV) were investigated with respect to virion stability and molecular determinants of aphid vector transmission. The mutant 2A1-MT-60x, derived from the mechanically passaged wild type 2A1-AT, is poorly transmissible by the aphid Aphis gossypii and not transmissible by the aphid Myzus persicae, whereas the wild type virus is transmissible by both aphid species. The mutant phenotype was shown to be conferred by a single encoded amino acid change of alanine to threonine at position 162 of the coat protein (CP). Modifying the mutant CP gene to encode the wild type sequence (alanine) at position 162 restored aphid transmission. To test for a correspondence between changes in the physical stability of virions and defects in aphid transmission, a urea disruption assay was developed. Virions of aphid-transmissible strains 2A1-AT and CMV-Fny were stable with treatments of up to between 3 and 4 M urea. In this assay mutant viruses 2A1-MT-60x and CMV-M were less stable, as they were completely disrupted at urea concentrations of 2 and 1 M urea, respectively. The mutant 2A1-MT-60x also accumulated at a reduced level in infected squash relative to the wild type virus. These studies suggest that a primary factor in the loss of aphid transmissibility of some strains of CMV is a reduction in virion stability.
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Affiliation(s)
- J C Ng
- Department of Botany and Plant Pathology, Purdue University, West Lafayette, Indiana, 47907, USA
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Gillaspie AG, Hajimorad MR, Ghabrial SA. Characterization of a Severe Strain of Cucumber Mosaic Cucumovirus Seedborne in Cowpea. PLANT DISEASE 1998; 82:419-422. [PMID: 30856891 DOI: 10.1094/pdis.1998.82.4.419] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
A new seedborne strain of cucumber mosaic cucumovirus (CMV) that induces severe symptoms on many cowpea genotypes was detected in Georgia in 1994. This strain, designated CMV-Csb, is asymptomatic on tobacco, but it produces more severe cowpea stunt symptoms when present in combination with blackeye cowpea mosaic potyvirus than do the more prevalent CMV isolates. The new strain is seedborne in cowpea (1.5 to 37%), has no associated satellite RNA, and is classified as a member of subgroup I of CMV strains based on nucleic acid hybridization assays.
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Affiliation(s)
- A G Gillaspie
- USDA, ARS, Plant Genetic Resources Conservation Unit, Griffin, GA 30223-1797
| | - M R Hajimorad
- Plant Pathology Department, University of Kentucky, Lexington 40546
| | - S A Ghabrial
- Plant Pathology Department, University of Kentucky, Lexington 40546
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20
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Salánki K, Carrère I, Jacquemond M, Balázs E, Tepfer M. Biological properties of pseudorecombinant and recombinant strains created with cucumber mosaic virus and tomato aspermy virus. J Virol 1997; 71:3597-602. [PMID: 9094632 PMCID: PMC191507 DOI: 10.1128/jvi.71.5.3597-3602.1997] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023] Open
Abstract
Cucumber mosaic virus (CMV) and tomato aspermy virus (TAV) are closely related cucumoviruses. We have made pseudorecombinant viruses in which the RNAs 3 of these two viruses have been exchanged and recombinant viruses containing chimeric RNA 3 molecules, in which the coat proteins and the 3'-end regions of CMV and TAV have been exchanged, giving rise to recombinants designated RT3 and TR3. The replication properties and the cell-to-cell and long-distance movement patterns of these pseudorecombinant and recombinant viruses were examined in different hosts. All the viruses were able to replicate and accumulate RNA 4 in protoplasts. The pseudorecombinants and the R1R2RT3 recombinant infected tobacco systemically, but the R1R2TR3 recombinant was not detectable, even in the inoculated leaves. Comparison of the abilities of the viruses to replicate in protoplasts and intact cucumber plants suggests that cell-to-cell movement factors are also encoded by RNAs 1 and/or 2. Major determinants of symptom severity in Nicotiana glutinosa are localized on the 3' part of RNA 3, and in Nicotiana benthamiana, more severe symptoms were observed with the T1T2R3 strain than with the others tested.
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Affiliation(s)
- K Salánki
- Agricultural Biotechnology Center, Institute for Plant Sciences, Gödöllö, Hungary
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21
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Kaplan IB, Gal-On A, Palukaitis P. Characterization of cucumber mosaic virus. III. Localization of sequences in the movement protein controlling systemic infection in cucurbits. Virology 1997; 230:343-9. [PMID: 9143290 DOI: 10.1006/viro.1997.8468] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Cucumber mosaic virus (CMV), generated from biologically active cDNA clones of Fny-CMV RNA 1 plus 2 and Sny-CMV RNA 3, derived from the Fny- and Sny-strains of CMV, was able to infect tobacco but not squash plants systemically. In squash, viral RNA, movement protein, and coat protein all accumulated in the inoculated cotyledons. The lack of systemic infection was associated with a reduced rate of cell-to-cell movement within the cotyledons. The restricted movement mapped to two sequence changes in the codons of amino acids 51 and 240 of the Sny-CMV 3a gene. These same sequence changes previously were shown to be associated with high levels of 3a protein accumulation and chronic vs acute, cyclic infection typical of Sny-CMV vs Fny-CMV [Gal-on et al. (1996). Virology 226, 354-361]. Fny-CMV, mutated in the codons of 3a gene amino acids 51 and 240, was still able to infect several solanaceous hosts (tobacco, tomato, and pepper) systemically, but did not elicit a typical CMV systemic infection on any of several cucurbit hosts (cucumber, melon, or squash). The significance of the location of amino acid positions 51 and 240 in the 3a movement protein is discussed.
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Affiliation(s)
- I B Kaplan
- Department of Plant Pathology, Cornell University, Ithaca, New York 14853-4203, USA
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Salánki K, Thole V, Balázs E, Burgyán J. Complete nucleotide sequence of the RNA 3 from subgroup II of cucumber mosaic virus (CMV) strain: Trk7. Virus Res 1994; 31:379-84. [PMID: 8191790 DOI: 10.1016/0168-1702(94)90030-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Abstract
The complete nucleotide sequence (2209 nucleotides) of the RNA 3 of the cucumber mosaic virus strain Trk7 was determined. Trk7-CMV possesses two open reading frames which encode the 3a protein (279 amino acids) and the coat protein (218 amino acids). Sequence analysis proved the earlier biological and serological classification of the RNA 3 molecule of Trk7-CMV in subgroup II. A high degree of homology was found in the strains Q and Kin of CMV, while the average similarity between the two different subgroups is much lower.
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Affiliation(s)
- K Salánki
- Institute for Plant Sciences, Agricultural Biotechnology Center, Gödöllö, Hungary
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Affiliation(s)
- P Palukaitis
- Department of Plant Pathology, Cornell University, Ithaca, New York 14853
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Owen J, Palukaitis P. Characterization of cucumber mosaic virus. I. Molecular heterogeneity mapping of RNA 3 in eight CMV strains. Virology 1988; 166:495-502. [PMID: 3176343 DOI: 10.1016/0042-6822(88)90520-x] [Citation(s) in RCA: 78] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
RNAs from 13 strains of cucumber mosaic virus (CMV) were divided into two groups on the basis of their ability to hybridize to cDNA of either Fny-CMV RNA or WL-CMV RNA. The extent of the cross-hybridization within one of these groups was analyzed by an RNA protection assay. A cDNA clone of RNA 3 of the Fny strain of CMV was placed in a transcription vector between bacterial promoters T3 and T7. Labeled, minus-sense RNA transcripts prepared from all or part of the cDNA to RNA 3 of Fny-CMV were annealed to the genomic RNA of each of a number of cucumoviruses and digested with RNases. The patterns of RNA fragments protected from digestion were specific for each CMV strain and revealed the extent and location of heterogeneity among the viruses as well as within the Fny-CMV natural population. This approach will allow the differences in host range and disease processes to be correlated with variations in genomic RNAs.
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Affiliation(s)
- J Owen
- Department of Plant Pathology, Cornell University, Ithaca, New York 14853
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Hiruki C. The dianthoviruses: a distinct group of isometric plant viruses with bipartite genome. Adv Virus Res 1987; 33:257-300. [PMID: 3296695 DOI: 10.1016/s0065-3527(08)60320-6] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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27
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Evidence for an association between viral coat protein and host chromatin in mosaic-diseased tobacco leaves. ACTA ACUST UNITED AC 1985. [DOI: 10.1016/0048-4059(85)90032-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Abstract
Segmental genomes (i.e., genomes in which the genetic information is dispersed between two or more discrete molecules) are abundant in RNA viruses, but virtually absent in DNA viruses. It has been suggested that the division of information in RNA viruses expands the pool of variation available to natural selection by providing for the reassortment of modular RNAs from different genetic sources. This explanation is based on the apparent inability of related RNA molecules to undergo the kinds of physical recombination that generate variation among related DNA molecules. In this paper we propose a radically different hypothesis. Self-replicating RNA genomes have an error rate of about 10(-3) - 10(-4) substitutions per base per generation, whereas for DNA genomes the corresponding figure is 10(-9) - 10(-11). Thus the level of noise in the RNA copier process is five to eight orders of magnitude higher than that in the DNA process. Since a small module of information has a higher chance of passing undamaged through a noisy channel than does a large one, the division of RNA viral information among separate small units increases its overall chances of survival. The selective advantage of genome segmentation is most easily modelled for modular RNAs wrapped up in separate viral coats. If modular RNAs are brought together in a common viral coat, segmentation is advantageous only when interactions among the modular RNAs are selective enough to provide some degree of discrimination against miscopied sequences. This requirement is most clearly met by the reoviruses.
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29
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Díaz-Ruiz JR, Kaper JM. Nucleotide sequence relationships among thirty peanut stunt virus isolates determined by competition hybridization. Arch Virol 1983; 75:277-81. [PMID: 6838382 DOI: 10.1007/bf01314893] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The nucleotide sequence homology among 30 peanut stunt virus (PSV) isolates was determined. The isolates divided into two groups with little homology between them but extensive homology among their members. Only one isolate had nonoverlapping partial homology with both groups.
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30
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Rao A, Francki R. Comparative studies on tomato aspermy and cucumber mosaic viruses. VI. Partial compatibility of genome segments from the two viruses. Virology 1981; 114:573-5. [DOI: 10.1016/0042-6822(81)90238-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/1981] [Accepted: 07/14/1981] [Indexed: 10/26/2022]
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31
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Gould A, Francki R, Randles J. Studies on encapsidated viroid-like RNA IV. requirement for infectivity and specificity of two RNA components from velvet tobacco mottle virus. Virology 1981; 110:420-6. [DOI: 10.1016/0042-6822(81)90072-6] [Citation(s) in RCA: 21] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/26/1980] [Indexed: 11/16/2022]
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Gould AR, Symons RH. Alfalfa mosaic virus RNA. Determination of the sequence homology between the four RNA species and a comparison with the four RNA species of cucumber mosaic virus. EUROPEAN JOURNAL OF BIOCHEMISTRY 1978; 91:269-78. [PMID: 720343 DOI: 10.1111/j.1432-1033.1978.tb20962.x] [Citation(s) in RCA: 37] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The method of Taylor et al. [Taylor, J. M., Illmensee, R & Summers, J. (1976) Biochim. Biophys. Acta, 442, 324--330 and Gould and Symons (1977) Nucleic Acids Res. 4, 3787--3802] has been used to transcribe complementary DNA probes from the four major RNAs of alfalfa mosaic virus (AMV). Analysis of the kinetics of hybridization of these probes in homologous and heterologous complementary DNA . RNA hybridization reactions has shown that the sequence of the smallest RNA (RNA 4), which contains the coat protein gene, is present within RNA 3 and located at the 3' end of this RNA species. RNAs 1 and 2 are unique RNA molecules with little or no sequence homology between them or RNAs 3 and 4. This latter observation contrasts with the situation that occurs in cucumber mosaic virus (CMV) as CMV RNAs 1--4 were shown to have a common nucleotide stretch of 200 bases at their 3' termini; the location of RNA 4 within RNA 3 of CMV was also shown to be at the 3' end of this RNA species.
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Gonda TJ, Symons RH. The use of hybridization analysis with complementary DNA to determine the RNA sequence homology between strains of plant viruses: its application to several strains of cucumoviruses. Virology 1978; 88:361-70. [PMID: 211717 DOI: 10.1016/0042-6822(78)90292-1] [Citation(s) in RCA: 45] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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35
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Gould AR, Palukaitis P, Symons RH, Mossop DW. Characterization of a satellite RNA associated with cucumber mosaic virus. Virology 1978; 84:443-55. [PMID: 622808 DOI: 10.1016/0042-6822(78)90261-1] [Citation(s) in RCA: 73] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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36
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Gould AR, Symons RH. Determination of the sequence homology between the four RNA species of cucumber mosaic virus by hybridization analysis with complementary DNA. Nucleic Acids Res 1977; 4:3787-802. [PMID: 593886 PMCID: PMC343200 DOI: 10.1093/nar/4.11.3787] [Citation(s) in RCA: 56] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
The method of Taylor etal., (11) has been used to transcribe complementary DNA probes from the four major RNA species of cucumber mosaic virus (RNAs 1 - 4 in order of decreasing molecular weight). Analysis of the kinetics of hybridization of these probes in homologous and heterologous complementary DNA-RNA hybridization reactions has shown that the sequence of the smallest RNA (RNA 4), which contains the coat protein gene, is present within RNA 3. RNAs 1 and 2 are unique RNA molecules while each has a region of approximately 300 nucleotides in common with RNA 4.Images
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38
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Lot H, Jonard G, Richards K. Cucumber mosaic virus RNA 5. Partial characterization and evidence for no large sequence homologies with genomic RNAs. FEBS Lett 1977; 80:395-400. [PMID: 891991 DOI: 10.1016/0014-5793(77)80484-5] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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39
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Takanami Y, Kubo S, Imaizumi S. Synthesis of single- and double-stranded cucumber mosaic virus RNAs in tobacco mesophyll protoplasts. Virology 1977; 80:376-89. [PMID: 888352 DOI: 10.1016/s0042-6822(77)80013-5] [Citation(s) in RCA: 30] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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41
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Kaper JM, Tousignant ME. Cucumber mosaic virus-associating RNA 5. I. Role of host plant and helper strain in determining amount of associated RNA 5 with virions. Virology 1977; 80:186-95. [PMID: 878311 DOI: 10.1016/0042-6822(77)90391-9] [Citation(s) in RCA: 72] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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42
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Schwinghamer MW, Symons RH. Translation of the four major RNA species of cucumber mosaic virus in plant and animal cell-free systems and in toad oocytes. Virology 1977; 79:88-108. [PMID: 405796 DOI: 10.1016/0042-6822(77)90337-3] [Citation(s) in RCA: 60] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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43
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Kaper JM, Waterworth HE. Cucumber Mosaic Virus Associated RNA 5: Causal Agent for Tomato Necrosis. Science 1977; 196:429-31. [PMID: 17776951 DOI: 10.1126/science.196.4288.429] [Citation(s) in RCA: 133] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
A small replicating RNA, encapsidated with and dependent on, but not part of the viral genome, modifies disease expression depending on the host. In tomato plants, it causes a lethal necrotic disease which is probably the same as that which, in 1972, destroyed most of the field tomato crop in large regions of the French Alsace.
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44
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Fisher LE, Koch G. Inhibition of protein synthesis by HeLa cell surface peptides. Biochem Biophys Res Commun 1976; 72:1229-36. [PMID: 999667 DOI: 10.1016/s0006-291x(76)80147-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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45
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Lot H, Kaper JM. Physical and chemical differentiation of three strains of cucumber mosaic virus and peanut stunt virus. Virology 1976; 74:209-22. [PMID: 982815 DOI: 10.1016/0042-6822(76)90142-2] [Citation(s) in RCA: 29] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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46
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Habili N, Francki RI. Comparative studies on tomato aspermy and cucumber mosaic viruses. IV. Immunogenic and serological properties. Virology 1975; 64:421-9. [PMID: 166487 DOI: 10.1016/0042-6822(75)90119-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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47
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Schwinghamer MW, Symons RH. Fractionation of cucumber mosaic virus RNA and its translation in a wheat embryo cell-free system. Virology 1975; 63:252-62. [PMID: 163049 DOI: 10.1016/0042-6822(75)90389-x] [Citation(s) in RCA: 71] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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